Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.949.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.946.1 and Xcc-8004.947.1 overlap by 41 nucleotidesXcc-8004.947.1 and Xcc-8004.948.1 overlap by 1 nucleotidesXcc-8004.948.1 and Xcc-8004.949.1 overlap by 4 nucleotidesXcc-8004.949.1 and Xcc-8004.950.1 overlap by 4 nucleotides Xcc-8004.946.1: Xcc-8004.946.1 - General secretion pathway protein H, at 891,305 to 891,829 Xcc-8004.946.1 Xcc-8004.947.1: Xcc-8004.947.1 - General secretion pathway protein I, at 891,789 to 892,184 Xcc-8004.947.1 Xcc-8004.948.1: Xcc-8004.948.1 - General secretion pathway protein J, at 892,184 to 892,783 Xcc-8004.948.1 Xcc-8004.949.1: Xcc-8004.949.1 - General secretion pathway protein K, at 892,780 to 893,772 Xcc-8004.949.1 Xcc-8004.950.1: Xcc-8004.950.1 - General secretion pathway protein L, at 893,769 to 894,833 Xcc-8004.950.1 Position (kb) 892 893 894Strain fitness (log2 ratio) -2 -1 0 1at 892.175 kb on + strandat 892.360 kb on - strand, within Xcc-8004.948.1at 892.360 kb on - strand, within Xcc-8004.948.1at 892.942 kb on + strand, within Xcc-8004.949.1at 892.943 kb on - strand, within Xcc-8004.949.1at 893.173 kb on + strand, within Xcc-8004.949.1at 893.173 kb on + strand, within Xcc-8004.949.1at 893.296 kb on + strand, within Xcc-8004.949.1at 893.297 kb on - strand, within Xcc-8004.949.1at 893.375 kb on - strand, within Xcc-8004.949.1at 893.508 kb on - strand, within Xcc-8004.949.1at 893.623 kb on + strand, within Xcc-8004.949.1at 893.623 kb on + strand, within Xcc-8004.949.1at 893.662 kb on + strand, within Xcc-8004.949.1at 893.711 kb on + strandat 893.711 kb on + strandat 893.712 kb on - strandat 893.712 kb on - strandat 893.712 kb on - strandat 894.666 kb on + strand, within Xcc-8004.950.1at 894.667 kb on - strand, within Xcc-8004.950.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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892,175 + -0.4
892,360 - Xcc-8004.948.1 0.29 -0.3
892,360 - Xcc-8004.948.1 0.29 -0.6
892,942 + Xcc-8004.949.1 0.16 -0.0
892,943 - Xcc-8004.949.1 0.16 -1.4
893,173 + Xcc-8004.949.1 0.40 -1.0
893,173 + Xcc-8004.949.1 0.40 -1.4
893,296 + Xcc-8004.949.1 0.52 -1.0
893,297 - Xcc-8004.949.1 0.52 +1.0
893,375 - Xcc-8004.949.1 0.60 +0.5
893,508 - Xcc-8004.949.1 0.73 -0.2
893,623 + Xcc-8004.949.1 0.85 +0.4
893,623 + Xcc-8004.949.1 0.85 -1.2
893,662 + Xcc-8004.949.1 0.89 +0.7
893,711 + -2.3
893,711 + +0.5
893,712 - -0.1
893,712 - -0.4
893,712 - -0.1
894,666 + Xcc-8004.950.1 0.84 +1.2
894,667 - Xcc-8004.950.1 0.84 +0.5

Or see this region's nucleotide sequence