Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.922.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.921.1 and Xcc-8004.922.1 overlap by 8 nucleotidesXcc-8004.922.1 and Xcc-8004.923.1 overlap by 4 nucleotidesXcc-8004.923.1 and Xcc-8004.924.1 are separated by 125 nucleotides Xcc-8004.921.1: Xcc-8004.921.1 - FIG01210236: hypothetical protein, at 864,774 to 865,919 Xcc-8004.921.1 Xcc-8004.922.1: Xcc-8004.922.1 - FIG01210252: hypothetical protein, at 865,912 to 866,976 Xcc-8004.922.1 Xcc-8004.923.1: Xcc-8004.923.1 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 866,973 to 867,836 Xcc-8004.923.1 Xcc-8004.924.1: Xcc-8004.924.1 - FIG01200701: possible membrane protein, at 867,962 to 868,339 Xcc-8004.924.1 Position (kb) 865 866 867Strain fitness (log2 ratio) -2 -1 0 1 2at 864.999 kb on + strand, within Xcc-8004.921.1at 865.104 kb on + strand, within Xcc-8004.921.1at 865.105 kb on - strand, within Xcc-8004.921.1at 865.266 kb on + strand, within Xcc-8004.921.1at 865.267 kb on - strand, within Xcc-8004.921.1at 865.267 kb on - strand, within Xcc-8004.921.1at 865.267 kb on - strand, within Xcc-8004.921.1at 865.534 kb on - strand, within Xcc-8004.921.1at 865.619 kb on + strand, within Xcc-8004.921.1at 865.629 kb on + strand, within Xcc-8004.921.1at 865.629 kb on + strand, within Xcc-8004.921.1at 865.630 kb on - strand, within Xcc-8004.921.1at 865.630 kb on - strand, within Xcc-8004.921.1at 865.630 kb on - strand, within Xcc-8004.921.1at 865.728 kb on + strand, within Xcc-8004.921.1at 865.728 kb on + strand, within Xcc-8004.921.1at 865.729 kb on - strand, within Xcc-8004.921.1at 865.731 kb on + strand, within Xcc-8004.921.1at 865.731 kb on + strand, within Xcc-8004.921.1at 865.731 kb on + strand, within Xcc-8004.921.1at 865.732 kb on - strand, within Xcc-8004.921.1at 865.732 kb on - strand, within Xcc-8004.921.1at 865.732 kb on - strand, within Xcc-8004.921.1at 865.795 kb on - strand, within Xcc-8004.921.1at 865.833 kb on + strandat 865.833 kb on + strandat 865.833 kb on + strandat 865.833 kb on + strandat 865.833 kb on + strandat 865.833 kb on + strandat 865.833 kb on + strandat 865.834 kb on - strandat 865.834 kb on - strandat 866.174 kb on + strand, within Xcc-8004.922.1at 866.175 kb on - strand, within Xcc-8004.922.1at 866.175 kb on - strand, within Xcc-8004.922.1at 866.287 kb on + strand, within Xcc-8004.922.1at 866.287 kb on + strand, within Xcc-8004.922.1at 866.287 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.330 kb on + strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.331 kb on - strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.332 kb on + strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.333 kb on - strand, within Xcc-8004.922.1at 866.347 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.356 kb on + strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.357 kb on - strand, within Xcc-8004.922.1at 866.444 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.459 kb on + strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.460 kb on - strand, within Xcc-8004.922.1at 866.533 kb on + strand, within Xcc-8004.922.1at 866.593 kb on + strand, within Xcc-8004.922.1at 866.593 kb on + strand, within Xcc-8004.922.1at 866.593 kb on + strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.594 kb on - strand, within Xcc-8004.922.1at 866.701 kb on + strand, within Xcc-8004.922.1at 866.701 kb on + strand, within Xcc-8004.922.1at 866.701 kb on + strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.702 kb on - strand, within Xcc-8004.922.1at 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.890 kb on + strandat 866.891 kb on - strandat 867.046 kb on + strandat 867.046 kb on + strandat 867.047 kb on - strandat 867.047 kb on - strandat 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.175 kb on - strand, within Xcc-8004.923.1at 867.247 kb on - strand, within Xcc-8004.923.1at 867.247 kb on - strand, within Xcc-8004.923.1at 867.402 kb on + strand, within Xcc-8004.923.1at 867.402 kb on + strand, within Xcc-8004.923.1at 867.403 kb on - strand, within Xcc-8004.923.1at 867.534 kb on + strand, within Xcc-8004.923.1at 867.534 kb on + strand, within Xcc-8004.923.1at 867.534 kb on + strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.535 kb on - strand, within Xcc-8004.923.1at 867.564 kb on + strand, within Xcc-8004.923.1at 867.564 kb on + strand, within Xcc-8004.923.1at 867.891 kb on + strandat 867.891 kb on + strandat 867.892 kb on - strandat 867.892 kb on - strandat 867.892 kb on - strandat 867.892 kb on - strandat 867.905 kb on + strandat 867.905 kb on + strandat 867.906 kb on - strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.958 kb on + strandat 867.959 kb on - strandat 867.959 kb on - strandat 867.959 kb on - strandat 867.959 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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864,999 + Xcc-8004.921.1 0.20 +0.0
865,104 + Xcc-8004.921.1 0.29 -0.4
865,105 - Xcc-8004.921.1 0.29 -1.2
865,266 + Xcc-8004.921.1 0.43 -0.3
865,267 - Xcc-8004.921.1 0.43 -0.3
865,267 - Xcc-8004.921.1 0.43 +1.0
865,267 - Xcc-8004.921.1 0.43 +0.6
865,534 - Xcc-8004.921.1 0.66 +0.1
865,619 + Xcc-8004.921.1 0.74 +0.1
865,629 + Xcc-8004.921.1 0.75 -1.4
865,629 + Xcc-8004.921.1 0.75 -0.2
865,630 - Xcc-8004.921.1 0.75 +0.3
865,630 - Xcc-8004.921.1 0.75 -1.5
865,630 - Xcc-8004.921.1 0.75 +1.4
865,728 + Xcc-8004.921.1 0.83 +0.1
865,728 + Xcc-8004.921.1 0.83 -0.5
865,729 - Xcc-8004.921.1 0.83 -0.6
865,731 + Xcc-8004.921.1 0.84 +0.0
865,731 + Xcc-8004.921.1 0.84 -0.1
865,731 + Xcc-8004.921.1 0.84 -0.5
865,732 - Xcc-8004.921.1 0.84 -0.9
865,732 - Xcc-8004.921.1 0.84 -0.7
865,732 - Xcc-8004.921.1 0.84 +0.4
865,795 - Xcc-8004.921.1 0.89 -0.3
865,833 + +0.4
865,833 + +0.9
865,833 + +1.0
865,833 + -0.5
865,833 + -0.3
865,833 + -0.4
865,833 + +0.6
865,834 - +0.1
865,834 - -0.3
866,174 + Xcc-8004.922.1 0.25 +0.1
866,175 - Xcc-8004.922.1 0.25 +0.8
866,175 - Xcc-8004.922.1 0.25 +0.7
866,287 + Xcc-8004.922.1 0.35 +0.4
866,287 + Xcc-8004.922.1 0.35 +0.2
866,287 + Xcc-8004.922.1 0.35 -0.4
866,330 + Xcc-8004.922.1 0.39 +0.1
866,330 + Xcc-8004.922.1 0.39 -1.2
866,330 + Xcc-8004.922.1 0.39 +1.1
866,330 + Xcc-8004.922.1 0.39 -0.4
866,330 + Xcc-8004.922.1 0.39 -0.5
866,330 + Xcc-8004.922.1 0.39 +0.1
866,330 + Xcc-8004.922.1 0.39 -1.1
866,330 + Xcc-8004.922.1 0.39 -1.2
866,330 + Xcc-8004.922.1 0.39 +0.5
866,330 + Xcc-8004.922.1 0.39 -0.2
866,330 + Xcc-8004.922.1 0.39 -1.2
866,330 + Xcc-8004.922.1 0.39 -0.6
866,330 + Xcc-8004.922.1 0.39 -0.9
866,331 - Xcc-8004.922.1 0.39 +0.1
866,331 - Xcc-8004.922.1 0.39 -0.7
866,331 - Xcc-8004.922.1 0.39 -0.2
866,331 - Xcc-8004.922.1 0.39 -0.8
866,331 - Xcc-8004.922.1 0.39 +0.7
866,331 - Xcc-8004.922.1 0.39 +1.0
866,331 - Xcc-8004.922.1 0.39 +0.6
866,331 - Xcc-8004.922.1 0.39 -0.2
866,331 - Xcc-8004.922.1 0.39 +0.6
866,331 - Xcc-8004.922.1 0.39 -0.1
866,331 - Xcc-8004.922.1 0.39 -0.2
866,331 - Xcc-8004.922.1 0.39 -0.2
866,331 - Xcc-8004.922.1 0.39 -0.7
866,331 - Xcc-8004.922.1 0.39 -0.5
866,332 + Xcc-8004.922.1 0.39 +0.4
866,332 + Xcc-8004.922.1 0.39 +0.7
866,332 + Xcc-8004.922.1 0.39 -0.2
866,332 + Xcc-8004.922.1 0.39 +0.0
866,332 + Xcc-8004.922.1 0.39 +0.6
866,332 + Xcc-8004.922.1 0.39 -1.5
866,332 + Xcc-8004.922.1 0.39 +1.0
866,333 - Xcc-8004.922.1 0.40 -0.3
866,333 - Xcc-8004.922.1 0.40 -0.7
866,333 - Xcc-8004.922.1 0.40 -0.8
866,333 - Xcc-8004.922.1 0.40 -0.7
866,333 - Xcc-8004.922.1 0.40 +0.0
866,347 + Xcc-8004.922.1 0.41 -0.9
866,356 + Xcc-8004.922.1 0.42 +0.1
866,356 + Xcc-8004.922.1 0.42 +1.7
866,356 + Xcc-8004.922.1 0.42 +0.5
866,356 + Xcc-8004.922.1 0.42 +0.4
866,357 - Xcc-8004.922.1 0.42 +0.2
866,357 - Xcc-8004.922.1 0.42 +0.1
866,357 - Xcc-8004.922.1 0.42 +0.9
866,357 - Xcc-8004.922.1 0.42 +1.0
866,444 + Xcc-8004.922.1 0.50 -0.2
866,459 + Xcc-8004.922.1 0.51 -0.6
866,459 + Xcc-8004.922.1 0.51 -0.8
866,459 + Xcc-8004.922.1 0.51 -0.9
866,459 + Xcc-8004.922.1 0.51 +0.1
866,459 + Xcc-8004.922.1 0.51 -0.5
866,460 - Xcc-8004.922.1 0.51 +0.5
866,460 - Xcc-8004.922.1 0.51 -0.8
866,460 - Xcc-8004.922.1 0.51 +0.1
866,460 - Xcc-8004.922.1 0.51 -0.7
866,533 + Xcc-8004.922.1 0.58 -0.1
866,593 + Xcc-8004.922.1 0.64 +1.4
866,593 + Xcc-8004.922.1 0.64 -0.9
866,593 + Xcc-8004.922.1 0.64 +1.2
866,594 - Xcc-8004.922.1 0.64 -0.8
866,594 - Xcc-8004.922.1 0.64 +0.3
866,594 - Xcc-8004.922.1 0.64 -1.2
866,594 - Xcc-8004.922.1 0.64 +2.3
866,701 + Xcc-8004.922.1 0.74 -0.1
866,701 + Xcc-8004.922.1 0.74 +0.3
866,701 + Xcc-8004.922.1 0.74 -1.2
866,702 - Xcc-8004.922.1 0.74 -1.8
866,702 - Xcc-8004.922.1 0.74 +0.3
866,702 - Xcc-8004.922.1 0.74 +0.3
866,702 - Xcc-8004.922.1 0.74 +1.1
866,702 - Xcc-8004.922.1 0.74 -0.7
866,890 + -0.4
866,890 + +0.1
866,890 + -0.1
866,890 + +2.2
866,890 + -0.5
866,890 + +1.5
866,891 - -0.1
867,046 + -1.4
867,046 + +0.4
867,047 - -0.0
867,047 - +0.3
867,175 - Xcc-8004.923.1 0.23 -0.3
867,175 - Xcc-8004.923.1 0.23 -0.5
867,175 - Xcc-8004.923.1 0.23 -0.9
867,175 - Xcc-8004.923.1 0.23 -1.2
867,175 - Xcc-8004.923.1 0.23 -1.0
867,175 - Xcc-8004.923.1 0.23 -0.1
867,175 - Xcc-8004.923.1 0.23 -0.0
867,247 - Xcc-8004.923.1 0.32 -0.8
867,247 - Xcc-8004.923.1 0.32 -0.1
867,402 + Xcc-8004.923.1 0.50 -0.3
867,402 + Xcc-8004.923.1 0.50 +0.7
867,403 - Xcc-8004.923.1 0.50 +1.7
867,534 + Xcc-8004.923.1 0.65 -0.6
867,534 + Xcc-8004.923.1 0.65 -0.0
867,534 + Xcc-8004.923.1 0.65 -0.8
867,535 - Xcc-8004.923.1 0.65 -0.5
867,535 - Xcc-8004.923.1 0.65 -0.2
867,535 - Xcc-8004.923.1 0.65 +0.7
867,535 - Xcc-8004.923.1 0.65 -0.2
867,564 + Xcc-8004.923.1 0.68 +0.0
867,564 + Xcc-8004.923.1 0.68 -0.5
867,891 + +0.7
867,891 + -0.4
867,892 - +0.4
867,892 - +0.2
867,892 - +1.0
867,892 - -0.8
867,905 + -0.1
867,905 + -0.2
867,906 - -1.3
867,958 + -1.5
867,958 + +0.3
867,958 + +0.3
867,958 + -0.5
867,958 + -0.2
867,958 + -0.1
867,958 + -0.9
867,958 + +0.9
867,959 - -0.8
867,959 - -0.3
867,959 - +0.6
867,959 - +0.2

Or see this region's nucleotide sequence