Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.907.1 and Xcc-8004.908.1 are separated by 122 nucleotides Xcc-8004.908.1 and Xcc-8004.909.1 are separated by 321 nucleotides
Xcc-8004.907.1: Xcc-8004.907.1 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 851,073 to 852,284
Xcc-8004.907.1
Xcc-8004.908.1: Xcc-8004.908.1 - Type I secretion system, outer membrane component LapE, at 852,407 to 853,468
Xcc-8004.908.1
Xcc-8004.909.1: Xcc-8004.909.1 - FIG01211604: hypothetical protein, at 853,790 to 854,773
Xcc-8004.909.1
Position (kb) 852
853
854 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 851.433 kb on + strand, within Xcc-8004.907.1 at 851.433 kb on + strand, within Xcc-8004.907.1 at 851.433 kb on + strand, within Xcc-8004.907.1 at 851.433 kb on + strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.434 kb on - strand, within Xcc-8004.907.1 at 851.577 kb on + strand, within Xcc-8004.907.1 at 851.577 kb on + strand, within Xcc-8004.907.1 at 851.578 kb on - strand, within Xcc-8004.907.1 at 851.607 kb on + strand, within Xcc-8004.907.1 at 851.608 kb on - strand, within Xcc-8004.907.1 at 851.608 kb on - strand, within Xcc-8004.907.1 at 851.658 kb on + strand, within Xcc-8004.907.1 at 851.698 kb on - strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.709 kb on + strand, within Xcc-8004.907.1 at 851.710 kb on - strand, within Xcc-8004.907.1 at 851.710 kb on - strand, within Xcc-8004.907.1 at 851.710 kb on - strand, within Xcc-8004.907.1 at 851.710 kb on - strand, within Xcc-8004.907.1 at 851.715 kb on + strand, within Xcc-8004.907.1 at 851.715 kb on + strand, within Xcc-8004.907.1 at 851.715 kb on + strand, within Xcc-8004.907.1 at 851.715 kb on + strand, within Xcc-8004.907.1 at 851.715 kb on + strand, within Xcc-8004.907.1 at 851.716 kb on - strand, within Xcc-8004.907.1 at 851.716 kb on - strand, within Xcc-8004.907.1 at 851.716 kb on - strand, within Xcc-8004.907.1 at 851.716 kb on - strand, within Xcc-8004.907.1 at 851.716 kb on - strand, within Xcc-8004.907.1 at 851.833 kb on - strand, within Xcc-8004.907.1 at 851.973 kb on + strand, within Xcc-8004.907.1 at 851.973 kb on + strand, within Xcc-8004.907.1 at 851.974 kb on - strand, within Xcc-8004.907.1 at 851.974 kb on - strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.031 kb on + strand, within Xcc-8004.907.1 at 852.032 kb on - strand, within Xcc-8004.907.1 at 852.032 kb on - strand, within Xcc-8004.907.1 at 852.032 kb on - strand, within Xcc-8004.907.1 at 852.082 kb on - strand, within Xcc-8004.907.1 at 852.082 kb on - strand, within Xcc-8004.907.1 at 852.282 kb on + strand at 852.346 kb on - strand at 852.346 kb on - strand at 852.395 kb on + strand at 852.395 kb on + strand at 852.396 kb on - strand at 852.396 kb on - strand at 852.438 kb on + strand at 852.438 kb on + strand at 852.438 kb on + strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.439 kb on - strand at 852.484 kb on - strand at 852.513 kb on + strand at 852.513 kb on + strand at 852.513 kb on + strand at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 852.514 kb on - strand, within Xcc-8004.908.1 at 853.021 kb on + strand, within Xcc-8004.908.1 at 853.021 kb on + strand, within Xcc-8004.908.1 at 853.022 kb on - strand, within Xcc-8004.908.1 at 853.039 kb on + strand, within Xcc-8004.908.1 at 853.050 kb on + strand, within Xcc-8004.908.1 at 853.051 kb on - strand, within Xcc-8004.908.1 at 853.116 kb on + strand, within Xcc-8004.908.1 at 853.117 kb on - strand, within Xcc-8004.908.1 at 853.117 kb on - strand, within Xcc-8004.908.1 at 853.129 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.200 kb on + strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.201 kb on - strand, within Xcc-8004.908.1 at 853.249 kb on - strand, within Xcc-8004.908.1 at 853.249 kb on - strand, within Xcc-8004.908.1 at 853.296 kb on + strand, within Xcc-8004.908.1 at 853.296 kb on + strand, within Xcc-8004.908.1 at 853.297 kb on - strand, within Xcc-8004.908.1 at 853.363 kb on + strand at 853.364 kb on - strand at 853.480 kb on + strand at 853.481 kb on - strand at 853.600 kb on + strand at 853.601 kb on - strand at 853.672 kb on + strand at 853.672 kb on + strand at 853.673 kb on - strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.675 kb on + strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.676 kb on - strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.680 kb on + strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.681 kb on - strand at 853.701 kb on + strand at 853.702 kb on - strand at 853.702 kb on - strand at 853.702 kb on - strand at 853.702 kb on - strand at 853.732 kb on + strand at 853.732 kb on + strand at 853.732 kb on + strand at 853.733 kb on - strand at 853.733 kb on - strand at 853.733 kb on - strand at 853.740 kb on + strand at 853.741 kb on - strand at 853.778 kb on + strand at 853.821 kb on + strand at 854.189 kb on + strand, within Xcc-8004.909.1 at 854.189 kb on + strand, within Xcc-8004.909.1 at 854.189 kb on + strand, within Xcc-8004.909.1 at 854.190 kb on - strand, within Xcc-8004.909.1 at 854.190 kb on - strand, within Xcc-8004.909.1 at 854.190 kb on - strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.307 kb on + strand, within Xcc-8004.909.1 at 854.308 kb on - strand, within Xcc-8004.909.1 at 854.308 kb on - strand, within Xcc-8004.909.1 at 854.308 kb on - strand, within Xcc-8004.909.1 at 854.437 kb on + strand, within Xcc-8004.909.1 at 854.468 kb on + strand, within Xcc-8004.909.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 851,433 + Xcc-8004.907.1 0.30 +0.2 851,433 + Xcc-8004.907.1 0.30 +0.9 851,433 + Xcc-8004.907.1 0.30 +0.3 851,433 + Xcc-8004.907.1 0.30 +1.4 851,434 - Xcc-8004.907.1 0.30 +0.9 851,434 - Xcc-8004.907.1 0.30 +0.3 851,434 - Xcc-8004.907.1 0.30 +0.2 851,434 - Xcc-8004.907.1 0.30 -2.7 851,434 - Xcc-8004.907.1 0.30 +1.7 851,434 - Xcc-8004.907.1 0.30 +2.0 851,577 + Xcc-8004.907.1 0.42 -0.6 851,577 + Xcc-8004.907.1 0.42 -0.1 851,578 - Xcc-8004.907.1 0.42 -1.5 851,607 + Xcc-8004.907.1 0.44 -0.7 851,608 - Xcc-8004.907.1 0.44 -1.4 851,608 - Xcc-8004.907.1 0.44 -0.6 851,658 + Xcc-8004.907.1 0.48 +0.1 851,698 - Xcc-8004.907.1 0.52 +0.2 851,709 + Xcc-8004.907.1 0.52 -0.2 851,709 + Xcc-8004.907.1 0.52 +0.2 851,709 + Xcc-8004.907.1 0.52 -1.0 851,709 + Xcc-8004.907.1 0.52 +0.4 851,709 + Xcc-8004.907.1 0.52 -0.0 851,709 + Xcc-8004.907.1 0.52 +0.3 851,709 + Xcc-8004.907.1 0.52 +0.5 851,709 + Xcc-8004.907.1 0.52 -1.5 851,709 + Xcc-8004.907.1 0.52 +1.2 851,709 + Xcc-8004.907.1 0.52 +0.5 851,710 - Xcc-8004.907.1 0.53 -1.2 851,710 - Xcc-8004.907.1 0.53 -0.8 851,710 - Xcc-8004.907.1 0.53 +1.2 851,710 - Xcc-8004.907.1 0.53 +0.4 851,715 + Xcc-8004.907.1 0.53 -0.5 851,715 + Xcc-8004.907.1 0.53 -0.5 851,715 + Xcc-8004.907.1 0.53 +1.5 851,715 + Xcc-8004.907.1 0.53 +0.0 851,715 + Xcc-8004.907.1 0.53 +0.1 851,716 - Xcc-8004.907.1 0.53 -0.3 851,716 - Xcc-8004.907.1 0.53 +0.5 851,716 - Xcc-8004.907.1 0.53 -0.1 851,716 - Xcc-8004.907.1 0.53 +0.4 851,716 - Xcc-8004.907.1 0.53 -0.5 851,833 - Xcc-8004.907.1 0.63 +0.3 851,973 + Xcc-8004.907.1 0.74 -0.1 851,973 + Xcc-8004.907.1 0.74 -0.2 851,974 - Xcc-8004.907.1 0.74 +0.6 851,974 - Xcc-8004.907.1 0.74 +1.8 852,031 + Xcc-8004.907.1 0.79 +0.3 852,031 + Xcc-8004.907.1 0.79 +0.8 852,031 + Xcc-8004.907.1 0.79 +2.0 852,031 + Xcc-8004.907.1 0.79 +0.8 852,031 + Xcc-8004.907.1 0.79 -0.9 852,031 + Xcc-8004.907.1 0.79 +0.4 852,031 + Xcc-8004.907.1 0.79 +1.1 852,031 + Xcc-8004.907.1 0.79 -0.6 852,031 + Xcc-8004.907.1 0.79 +0.5 852,032 - Xcc-8004.907.1 0.79 -0.4 852,032 - Xcc-8004.907.1 0.79 -0.6 852,032 - Xcc-8004.907.1 0.79 +0.5 852,082 - Xcc-8004.907.1 0.83 +0.6 852,082 - Xcc-8004.907.1 0.83 +0.1 852,282 + -0.3 852,346 - -0.5 852,346 - -0.4 852,395 + +1.6 852,395 + +0.9 852,396 - -0.1 852,396 - -0.5 852,438 + +0.3 852,438 + -1.1 852,438 + +0.5 852,439 - +1.6 852,439 - -1.5 852,439 - +0.5 852,439 - -0.7 852,439 - +0.8 852,439 - +0.1 852,439 - -0.9 852,484 - -0.9 852,513 + -1.0 852,513 + -0.7 852,513 + +0.3 852,514 - Xcc-8004.908.1 0.10 +0.1 852,514 - Xcc-8004.908.1 0.10 +1.0 852,514 - Xcc-8004.908.1 0.10 +0.4 852,514 - Xcc-8004.908.1 0.10 +0.7 852,514 - Xcc-8004.908.1 0.10 +0.5 852,514 - Xcc-8004.908.1 0.10 -0.7 852,514 - Xcc-8004.908.1 0.10 -1.1 853,021 + Xcc-8004.908.1 0.58 -1.0 853,021 + Xcc-8004.908.1 0.58 +0.4 853,022 - Xcc-8004.908.1 0.58 -1.5 853,039 + Xcc-8004.908.1 0.60 -0.8 853,050 + Xcc-8004.908.1 0.61 +0.1 853,051 - Xcc-8004.908.1 0.61 -2.3 853,116 + Xcc-8004.908.1 0.67 -0.5 853,117 - Xcc-8004.908.1 0.67 -0.5 853,117 - Xcc-8004.908.1 0.67 -0.6 853,129 + Xcc-8004.908.1 0.68 -0.2 853,200 + Xcc-8004.908.1 0.75 -1.7 853,200 + Xcc-8004.908.1 0.75 -1.4 853,200 + Xcc-8004.908.1 0.75 +1.4 853,200 + Xcc-8004.908.1 0.75 -0.7 853,201 - Xcc-8004.908.1 0.75 +1.8 853,201 - Xcc-8004.908.1 0.75 +0.5 853,201 - Xcc-8004.908.1 0.75 +0.1 853,201 - Xcc-8004.908.1 0.75 -0.3 853,201 - Xcc-8004.908.1 0.75 -0.8 853,249 - Xcc-8004.908.1 0.79 -0.4 853,249 - Xcc-8004.908.1 0.79 -0.3 853,296 + Xcc-8004.908.1 0.84 -0.5 853,296 + Xcc-8004.908.1 0.84 -1.0 853,297 - Xcc-8004.908.1 0.84 -2.0 853,363 + +0.9 853,364 - -0.2 853,480 + -2.0 853,481 - +0.6 853,600 + +0.5 853,601 - -0.4 853,672 + +0.2 853,672 + +0.3 853,673 - -1.7 853,675 + -0.7 853,675 + +0.2 853,675 + +0.0 853,675 + +2.0 853,675 + +3.0 853,675 + +2.0 853,675 + +0.0 853,675 + -1.3 853,675 + +3.0 853,675 + +2.0 853,676 - +1.2 853,676 - +0.4 853,676 - -0.2 853,676 - +1.4 853,676 - -0.7 853,676 - +0.9 853,676 - -0.4 853,676 - +0.2 853,680 + +2.0 853,680 + +3.0 853,680 + +3.0 853,680 + +0.4 853,680 + +0.6 853,680 + +0.0 853,680 + +3.0 853,681 - -0.2 853,681 - -0.1 853,681 - +0.8 853,681 - -0.3 853,681 - +0.4 853,681 - +0.0 853,681 - -2.6 853,681 - +0.7 853,681 - +0.1 853,681 - -0.3 853,681 - +0.7 853,681 - -2.6 853,681 - +0.1 853,681 - +0.5 853,681 - -0.1 853,681 - +0.7 853,681 - -1.8 853,681 - +0.4 853,681 - -0.8 853,681 - +0.1 853,681 - +1.3 853,681 - +0.1 853,681 - +0.3 853,681 - -0.9 853,681 - -1.1 853,681 - +0.3 853,681 - -0.1 853,701 + +2.0 853,702 - +0.1 853,702 - -0.2 853,702 - -0.6 853,702 - +0.7 853,732 + +0.5 853,732 + +0.5 853,732 + +3.0 853,733 - -1.6 853,733 - +0.4 853,733 - +0.2 853,740 + -0.3 853,741 - -0.5 853,778 + +1.0 853,821 + -0.0 854,189 + Xcc-8004.909.1 0.41 +0.5 854,189 + Xcc-8004.909.1 0.41 -0.5 854,189 + Xcc-8004.909.1 0.41 -1.4 854,190 - Xcc-8004.909.1 0.41 +1.2 854,190 - Xcc-8004.909.1 0.41 +1.0 854,190 - Xcc-8004.909.1 0.41 +1.1 854,307 + Xcc-8004.909.1 0.53 -0.5 854,307 + Xcc-8004.909.1 0.53 -0.0 854,307 + Xcc-8004.909.1 0.53 +0.2 854,307 + Xcc-8004.909.1 0.53 -2.0 854,307 + Xcc-8004.909.1 0.53 +1.8 854,307 + Xcc-8004.909.1 0.53 -0.6 854,307 + Xcc-8004.909.1 0.53 +0.1 854,307 + Xcc-8004.909.1 0.53 +0.4 854,308 - Xcc-8004.909.1 0.53 -0.3 854,308 - Xcc-8004.909.1 0.53 +3.0 854,308 - Xcc-8004.909.1 0.53 +0.8 854,437 + Xcc-8004.909.1 0.66 +1.5 854,468 + Xcc-8004.909.1 0.69 +0.1
Or see this region's nucleotide sequence