Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.726.1 and Xcc-8004.727.1 are separated by 228 nucleotides Xcc-8004.727.1 and Xcc-8004.728.1 overlap by 4 nucleotides Xcc-8004.728.1 and Xcc-8004.729.1 are separated by 46 nucleotides
Xcc-8004.726.1: Xcc-8004.726.1 - Putative preQ0 transporter, at 677,363 to 677,920
Xcc-8004.726.1
Xcc-8004.727.1: Xcc-8004.727.1 - FIG01210864: hypothetical protein, at 678,149 to 678,652
Xcc-8004.727.1
Xcc-8004.728.1: Xcc-8004.728.1 - Putative outer membrane protein, at 678,649 to 679,509
Xcc-8004.728.1
Xcc-8004.729.1: Xcc-8004.729.1 - DUF1022 domain-containing protein, at 679,556 to 680,503
Xcc-8004.729.1
Position (kb) 678
679 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 677.153 kb on - strand at 677.153 kb on - strand at 677.163 kb on + strand at 677.163 kb on + strand at 677.256 kb on + strand at 677.328 kb on + strand at 677.812 kb on - strand, within Xcc-8004.726.1 at 677.972 kb on + strand at 678.011 kb on - strand at 678.090 kb on + strand at 678.091 kb on - strand at 678.150 kb on + strand at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.396 kb on - strand, within Xcc-8004.727.1 at 678.508 kb on - strand, within Xcc-8004.727.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.759 kb on - strand, within Xcc-8004.728.1 at 678.759 kb on - strand, within Xcc-8004.728.1 at 678.772 kb on - strand, within Xcc-8004.728.1 at 678.772 kb on - strand, within Xcc-8004.728.1 at 678.837 kb on + strand, within Xcc-8004.728.1 at 678.837 kb on + strand, within Xcc-8004.728.1 at 679.009 kb on - strand, within Xcc-8004.728.1 at 679.035 kb on - strand, within Xcc-8004.728.1 at 679.182 kb on - strand, within Xcc-8004.728.1 at 679.272 kb on + strand, within Xcc-8004.728.1 at 679.272 kb on + strand, within Xcc-8004.728.1 at 679.272 kb on + strand, within Xcc-8004.728.1 at 679.272 kb on + strand, within Xcc-8004.728.1 at 679.272 kb on + strand, within Xcc-8004.728.1 at 679.273 kb on - strand, within Xcc-8004.728.1 at 679.273 kb on - strand, within Xcc-8004.728.1 at 679.273 kb on - strand, within Xcc-8004.728.1 at 679.410 kb on - strand, within Xcc-8004.728.1 at 679.444 kb on + strand at 679.479 kb on - strand at 679.479 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 677,153 - +1.4 677,153 - -0.5 677,163 + +0.1 677,163 + -0.1 677,256 + -0.9 677,328 + +0.9 677,812 - Xcc-8004.726.1 0.80 +0.8 677,972 + -0.2 678,011 - -0.7 678,090 + +0.5 678,091 - +0.6 678,150 + +0.9 678,323 + Xcc-8004.727.1 0.35 +0.5 678,323 + Xcc-8004.727.1 0.35 -1.3 678,323 + Xcc-8004.727.1 0.35 +0.1 678,324 - Xcc-8004.727.1 0.35 -0.2 678,324 - Xcc-8004.727.1 0.35 +0.4 678,324 - Xcc-8004.727.1 0.35 -1.0 678,324 - Xcc-8004.727.1 0.35 -0.1 678,324 - Xcc-8004.727.1 0.35 +0.5 678,324 - Xcc-8004.727.1 0.35 -0.5 678,396 - Xcc-8004.727.1 0.49 -0.6 678,508 - Xcc-8004.727.1 0.71 -0.0 678,758 + Xcc-8004.728.1 0.13 -0.1 678,758 + Xcc-8004.728.1 0.13 +0.6 678,758 + Xcc-8004.728.1 0.13 -0.7 678,759 - Xcc-8004.728.1 0.13 +0.4 678,759 - Xcc-8004.728.1 0.13 -0.2 678,772 - Xcc-8004.728.1 0.14 -0.7 678,772 - Xcc-8004.728.1 0.14 +0.4 678,837 + Xcc-8004.728.1 0.22 -0.4 678,837 + Xcc-8004.728.1 0.22 +3.0 679,009 - Xcc-8004.728.1 0.42 -0.7 679,035 - Xcc-8004.728.1 0.45 -1.2 679,182 - Xcc-8004.728.1 0.62 -1.8 679,272 + Xcc-8004.728.1 0.72 +0.9 679,272 + Xcc-8004.728.1 0.72 +1.0 679,272 + Xcc-8004.728.1 0.72 -0.4 679,272 + Xcc-8004.728.1 0.72 +1.4 679,272 + Xcc-8004.728.1 0.72 -0.2 679,273 - Xcc-8004.728.1 0.72 -0.9 679,273 - Xcc-8004.728.1 0.72 -0.2 679,273 - Xcc-8004.728.1 0.72 +5.3 679,410 - Xcc-8004.728.1 0.88 +1.3 679,444 + +0.5 679,479 - -0.3 679,479 - -0.9
Or see this region's nucleotide sequence