Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.724.1 and Xcc-8004.726.1 are separated by 563 nucleotides Xcc-8004.726.1 and Xcc-8004.727.1 are separated by 228 nucleotides Xcc-8004.727.1 and Xcc-8004.728.1 overlap by 4 nucleotides
Xcc-8004.724.1: Xcc-8004.724.1 - putative; ORF located using Glimmer/Genemark, at 675,258 to 676,799
Xcc-8004.724.1
Xcc-8004.726.1: Xcc-8004.726.1 - Putative preQ0 transporter, at 677,363 to 677,920
Xcc-8004.726.1
Xcc-8004.727.1: Xcc-8004.727.1 - FIG01210864: hypothetical protein, at 678,149 to 678,652
Xcc-8004.727.1
Xcc-8004.728.1: Xcc-8004.728.1 - Putative outer membrane protein, at 678,649 to 679,509
Xcc-8004.728.1
Position (kb) 677
678 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 676.520 kb on - strand, within Xcc-8004.724.1 at 676.520 kb on - strand, within Xcc-8004.724.1 at 676.601 kb on + strand, within Xcc-8004.724.1 at 676.811 kb on + strand at 676.811 kb on + strand at 676.864 kb on + strand at 676.877 kb on - strand at 676.890 kb on + strand at 676.891 kb on - strand at 676.891 kb on - strand at 676.891 kb on - strand at 676.894 kb on + strand at 676.894 kb on + strand at 676.895 kb on - strand at 676.895 kb on - strand at 676.895 kb on - strand at 676.897 kb on + strand at 676.915 kb on - strand at 677.046 kb on + strand at 677.080 kb on - strand at 677.153 kb on - strand at 677.153 kb on - strand at 677.163 kb on + strand at 677.163 kb on + strand at 677.256 kb on + strand at 677.328 kb on + strand at 677.812 kb on - strand, within Xcc-8004.726.1 at 677.972 kb on + strand at 678.011 kb on - strand at 678.090 kb on + strand at 678.091 kb on - strand at 678.150 kb on + strand at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.323 kb on + strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.324 kb on - strand, within Xcc-8004.727.1 at 678.396 kb on - strand, within Xcc-8004.727.1 at 678.508 kb on - strand, within Xcc-8004.727.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.758 kb on + strand, within Xcc-8004.728.1 at 678.759 kb on - strand, within Xcc-8004.728.1 at 678.759 kb on - strand, within Xcc-8004.728.1 at 678.772 kb on - strand, within Xcc-8004.728.1 at 678.772 kb on - strand, within Xcc-8004.728.1 at 678.837 kb on + strand, within Xcc-8004.728.1 at 678.837 kb on + strand, within Xcc-8004.728.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 676,520 - Xcc-8004.724.1 0.82 -0.2 676,520 - Xcc-8004.724.1 0.82 +0.2 676,601 + Xcc-8004.724.1 0.87 -0.4 676,811 + +0.3 676,811 + -1.7 676,864 + -0.9 676,877 - +0.2 676,890 + +0.4 676,891 - -0.2 676,891 - -0.2 676,891 - +0.7 676,894 + +1.0 676,894 + +0.3 676,895 - -1.5 676,895 - -0.5 676,895 - -0.2 676,897 + +0.0 676,915 - -2.7 677,046 + -0.0 677,080 - -0.7 677,153 - +1.4 677,153 - -0.5 677,163 + +0.1 677,163 + -0.1 677,256 + -0.9 677,328 + +0.9 677,812 - Xcc-8004.726.1 0.80 +0.8 677,972 + -0.2 678,011 - -0.7 678,090 + +0.5 678,091 - +0.6 678,150 + +0.9 678,323 + Xcc-8004.727.1 0.35 +0.5 678,323 + Xcc-8004.727.1 0.35 -1.3 678,323 + Xcc-8004.727.1 0.35 +0.1 678,324 - Xcc-8004.727.1 0.35 -0.2 678,324 - Xcc-8004.727.1 0.35 +0.4 678,324 - Xcc-8004.727.1 0.35 -1.0 678,324 - Xcc-8004.727.1 0.35 -0.1 678,324 - Xcc-8004.727.1 0.35 +0.5 678,324 - Xcc-8004.727.1 0.35 -0.5 678,396 - Xcc-8004.727.1 0.49 -0.6 678,508 - Xcc-8004.727.1 0.71 -0.0 678,758 + Xcc-8004.728.1 0.13 -0.1 678,758 + Xcc-8004.728.1 0.13 +0.6 678,758 + Xcc-8004.728.1 0.13 -0.7 678,759 - Xcc-8004.728.1 0.13 +0.4 678,759 - Xcc-8004.728.1 0.13 -0.2 678,772 - Xcc-8004.728.1 0.14 -0.7 678,772 - Xcc-8004.728.1 0.14 +0.4 678,837 + Xcc-8004.728.1 0.22 -0.4 678,837 + Xcc-8004.728.1 0.22 +3.0
Or see this region's nucleotide sequence