Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.720.1 and Xcc-8004.721.1 overlap by 4 nucleotides Xcc-8004.721.1 and Xcc-8004.722.1 overlap by 4 nucleotides Xcc-8004.722.1 and Xcc-8004.723.1 are separated by 189 nucleotides Xcc-8004.723.1 and Xcc-8004.724.1 are separated by 82 nucleotides
Xcc-8004.720.1: Xcc-8004.720.1 - putative iron-regulated membrane protein, at 669,886 to 671,508
Xcc-8004.720.1
Xcc-8004.721.1: Xcc-8004.721.1 - putative; ORF located using Glimmer/Genemark, at 671,505 to 671,825
Xcc-8004.721.1
Xcc-8004.722.1: Xcc-8004.722.1 - putative; ORF located using Glimmer/Genemark, at 671,822 to 672,172
Xcc-8004.722.1
Xcc-8004.723.1: Xcc-8004.723.1 - Glutamate-ammonia-ligase adenylyltransferase (EC 2.7.7.42), at 672,362 to 675,175
Xcc-8004.723.1
Xcc-8004.724.1: Xcc-8004.724.1 - putative; ORF located using Glimmer/Genemark, at 675,258 to 676,799
Xcc-8004.724.1
Position (kb) 672
673
674
675
676 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.419 kb on + strand at 671.420 kb on - strand at 671.420 kb on - strand at 671.578 kb on + strand, within Xcc-8004.721.1 at 671.579 kb on - strand, within Xcc-8004.721.1 at 671.579 kb on - strand, within Xcc-8004.721.1 at 671.697 kb on + strand, within Xcc-8004.721.1 at 671.697 kb on + strand, within Xcc-8004.721.1 at 671.697 kb on + strand, within Xcc-8004.721.1 at 672.030 kb on + strand, within Xcc-8004.722.1 at 672.030 kb on + strand, within Xcc-8004.722.1 at 672.030 kb on + strand, within Xcc-8004.722.1 at 672.083 kb on + strand, within Xcc-8004.722.1 at 672.083 kb on + strand, within Xcc-8004.722.1 at 672.084 kb on - strand, within Xcc-8004.722.1 at 672.084 kb on - strand, within Xcc-8004.722.1 at 672.196 kb on + strand at 672.282 kb on - strand at 672.492 kb on + strand at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.696 kb on + strand, within Xcc-8004.723.1 at 672.697 kb on - strand, within Xcc-8004.723.1 at 672.697 kb on - strand, within Xcc-8004.723.1 at 672.893 kb on + strand, within Xcc-8004.723.1 at 672.893 kb on + strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.894 kb on - strand, within Xcc-8004.723.1 at 672.899 kb on + strand, within Xcc-8004.723.1 at 673.091 kb on + strand, within Xcc-8004.723.1 at 673.091 kb on + strand, within Xcc-8004.723.1 at 673.092 kb on - strand, within Xcc-8004.723.1 at 673.092 kb on - strand, within Xcc-8004.723.1 at 673.092 kb on - strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.124 kb on + strand, within Xcc-8004.723.1 at 673.206 kb on - strand, within Xcc-8004.723.1 at 673.361 kb on - strand, within Xcc-8004.723.1 at 673.693 kb on + strand, within Xcc-8004.723.1 at 673.958 kb on + strand, within Xcc-8004.723.1 at 673.959 kb on - strand, within Xcc-8004.723.1 at 674.052 kb on - strand, within Xcc-8004.723.1 at 674.122 kb on + strand, within Xcc-8004.723.1 at 674.255 kb on - strand, within Xcc-8004.723.1 at 674.255 kb on - strand, within Xcc-8004.723.1 at 674.432 kb on + strand, within Xcc-8004.723.1 at 674.634 kb on - strand, within Xcc-8004.723.1 at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.289 kb on + strand at 675.290 kb on - strand at 675.326 kb on - strand at 675.330 kb on + strand at 675.396 kb on - strand at 675.396 kb on - strand at 675.396 kb on - strand at 675.421 kb on + strand, within Xcc-8004.724.1 at 675.422 kb on - strand, within Xcc-8004.724.1 at 675.424 kb on - strand, within Xcc-8004.724.1 at 675.453 kb on + strand, within Xcc-8004.724.1 at 675.454 kb on - strand, within Xcc-8004.724.1 at 675.614 kb on + strand, within Xcc-8004.724.1 at 675.615 kb on - strand, within Xcc-8004.724.1 at 675.875 kb on - strand, within Xcc-8004.724.1 at 675.953 kb on + strand, within Xcc-8004.724.1 at 675.953 kb on + strand, within Xcc-8004.724.1 at 676.067 kb on + strand, within Xcc-8004.724.1 at 676.067 kb on + strand, within Xcc-8004.724.1 at 676.068 kb on - strand, within Xcc-8004.724.1 at 676.068 kb on - strand, within Xcc-8004.724.1 at 676.146 kb on - strand, within Xcc-8004.724.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 671,419 + -0.8 671,419 + -0.8 671,419 + -0.7 671,419 + -1.9 671,419 + +2.0 671,419 + -1.0 671,420 - -0.2 671,420 - -1.5 671,578 + Xcc-8004.721.1 0.23 +0.2 671,579 - Xcc-8004.721.1 0.23 -0.9 671,579 - Xcc-8004.721.1 0.23 +0.3 671,697 + Xcc-8004.721.1 0.60 -0.1 671,697 + Xcc-8004.721.1 0.60 -0.4 671,697 + Xcc-8004.721.1 0.60 +0.3 672,030 + Xcc-8004.722.1 0.59 +1.6 672,030 + Xcc-8004.722.1 0.59 -2.3 672,030 + Xcc-8004.722.1 0.59 +0.8 672,083 + Xcc-8004.722.1 0.74 -0.4 672,083 + Xcc-8004.722.1 0.74 -0.5 672,084 - Xcc-8004.722.1 0.75 +1.1 672,084 - Xcc-8004.722.1 0.75 -0.5 672,196 + -0.2 672,282 - -1.3 672,492 + -0.1 672,696 + Xcc-8004.723.1 0.12 -0.8 672,696 + Xcc-8004.723.1 0.12 -0.3 672,696 + Xcc-8004.723.1 0.12 -1.6 672,696 + Xcc-8004.723.1 0.12 -1.9 672,697 - Xcc-8004.723.1 0.12 -1.1 672,697 - Xcc-8004.723.1 0.12 -0.6 672,893 + Xcc-8004.723.1 0.19 -0.7 672,893 + Xcc-8004.723.1 0.19 +0.3 672,894 - Xcc-8004.723.1 0.19 -0.3 672,894 - Xcc-8004.723.1 0.19 -1.0 672,894 - Xcc-8004.723.1 0.19 -0.5 672,894 - Xcc-8004.723.1 0.19 -1.2 672,899 + Xcc-8004.723.1 0.19 -0.9 673,091 + Xcc-8004.723.1 0.26 -0.5 673,091 + Xcc-8004.723.1 0.26 -0.1 673,092 - Xcc-8004.723.1 0.26 -0.1 673,092 - Xcc-8004.723.1 0.26 -0.2 673,092 - Xcc-8004.723.1 0.26 -1.3 673,124 + Xcc-8004.723.1 0.27 -1.5 673,124 + Xcc-8004.723.1 0.27 -1.7 673,124 + Xcc-8004.723.1 0.27 -1.5 673,124 + Xcc-8004.723.1 0.27 -0.8 673,124 + Xcc-8004.723.1 0.27 -0.3 673,206 - Xcc-8004.723.1 0.30 -2.8 673,361 - Xcc-8004.723.1 0.36 +1.1 673,693 + Xcc-8004.723.1 0.47 -2.3 673,958 + Xcc-8004.723.1 0.57 +0.4 673,959 - Xcc-8004.723.1 0.57 +0.0 674,052 - Xcc-8004.723.1 0.60 +0.4 674,122 + Xcc-8004.723.1 0.63 +0.5 674,255 - Xcc-8004.723.1 0.67 -1.1 674,255 - Xcc-8004.723.1 0.67 +0.3 674,432 + Xcc-8004.723.1 0.74 -2.5 674,634 - Xcc-8004.723.1 0.81 -0.3 675,289 + -0.4 675,289 + -0.3 675,289 + +0.2 675,289 + +1.5 675,289 + +0.2 675,290 - -0.9 675,326 - +0.5 675,330 + -0.6 675,396 - -1.9 675,396 - +0.3 675,396 - -0.2 675,421 + Xcc-8004.724.1 0.11 -2.3 675,422 - Xcc-8004.724.1 0.11 +0.1 675,424 - Xcc-8004.724.1 0.11 +0.1 675,453 + Xcc-8004.724.1 0.13 +0.4 675,454 - Xcc-8004.724.1 0.13 +0.6 675,614 + Xcc-8004.724.1 0.23 +0.9 675,615 - Xcc-8004.724.1 0.23 -1.0 675,875 - Xcc-8004.724.1 0.40 -0.1 675,953 + Xcc-8004.724.1 0.45 -0.5 675,953 + Xcc-8004.724.1 0.45 -0.4 676,067 + Xcc-8004.724.1 0.52 -0.7 676,067 + Xcc-8004.724.1 0.52 +0.1 676,068 - Xcc-8004.724.1 0.53 +0.0 676,068 - Xcc-8004.724.1 0.53 +0.6 676,146 - Xcc-8004.724.1 0.58 -0.3
Or see this region's nucleotide sequence