Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.712.1 and Xcc-8004.713.1 overlap by 4 nucleotides Xcc-8004.713.1 and Xcc-8004.714.1 are separated by 3 nucleotides Xcc-8004.714.1 and Xcc-8004.715.1 are separated by 61 nucleotides Xcc-8004.715.1 and Xcc-8004.716.1 are separated by 12 nucleotides
Xcc-8004.712.1: Xcc-8004.712.1 - Gluconolactonase (EC 3.1.1.17), at 663,334 to 664,254
Xcc-8004.712.1
Xcc-8004.713.1: Xcc-8004.713.1 - FIG01210186: hypothetical protein, at 664,251 to 664,769
Xcc-8004.713.1
Xcc-8004.714.1: Xcc-8004.714.1 - hypothetical protein, at 664,773 to 665,183
Xcc-8004.714.1
Xcc-8004.715.1: Xcc-8004.715.1 - RNA polymerase sigma factor, at 665,245 to 665,754
Xcc-8004.715.1
Xcc-8004.716.1: Xcc-8004.716.1 - Fe2+-dicitrate sensor, membrane component, at 665,767 to 666,792
Xcc-8004.716.1
Position (kb) 665
666 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 664.686 kb on - strand, within Xcc-8004.713.1 at 664.834 kb on + strand, within Xcc-8004.714.1 at 664.834 kb on + strand, within Xcc-8004.714.1 at 664.834 kb on + strand, within Xcc-8004.714.1 at 664.835 kb on - strand, within Xcc-8004.714.1 at 664.835 kb on - strand, within Xcc-8004.714.1 at 664.835 kb on - strand, within Xcc-8004.714.1 at 664.835 kb on - strand, within Xcc-8004.714.1 at 664.835 kb on - strand, within Xcc-8004.714.1 at 665.041 kb on + strand, within Xcc-8004.714.1 at 665.041 kb on + strand, within Xcc-8004.714.1 at 665.041 kb on + strand, within Xcc-8004.714.1 at 665.176 kb on + strand at 665.290 kb on + strand at 665.290 kb on + strand at 665.290 kb on + strand at 665.290 kb on + strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.291 kb on - strand at 665.312 kb on + strand, within Xcc-8004.715.1 at 665.497 kb on + strand, within Xcc-8004.715.1 at 665.498 kb on - strand, within Xcc-8004.715.1 at 665.498 kb on - strand, within Xcc-8004.715.1 at 665.498 kb on - strand, within Xcc-8004.715.1 at 665.656 kb on + strand, within Xcc-8004.715.1 at 665.656 kb on + strand, within Xcc-8004.715.1 at 665.707 kb on + strand at 665.707 kb on + strand at 665.707 kb on + strand at 665.707 kb on + strand at 665.708 kb on - strand at 665.708 kb on - strand at 665.708 kb on - strand at 665.708 kb on - strand at 665.708 kb on - strand at 665.897 kb on + strand, within Xcc-8004.716.1 at 665.898 kb on - strand, within Xcc-8004.716.1 at 665.898 kb on - strand, within Xcc-8004.716.1 at 665.898 kb on - strand, within Xcc-8004.716.1 at 665.898 kb on - strand, within Xcc-8004.716.1 at 665.898 kb on - strand, within Xcc-8004.716.1 at 666.154 kb on + strand, within Xcc-8004.716.1 at 666.155 kb on - strand, within Xcc-8004.716.1 at 666.155 kb on - strand, within Xcc-8004.716.1 at 666.155 kb on - strand, within Xcc-8004.716.1 at 666.155 kb on - strand, within Xcc-8004.716.1 at 666.392 kb on + strand, within Xcc-8004.716.1 at 666.392 kb on + strand, within Xcc-8004.716.1 at 666.393 kb on - strand, within Xcc-8004.716.1 at 666.747 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 664,686 - Xcc-8004.713.1 0.84 -2.0 664,834 + Xcc-8004.714.1 0.15 -0.7 664,834 + Xcc-8004.714.1 0.15 +0.1 664,834 + Xcc-8004.714.1 0.15 -0.4 664,835 - Xcc-8004.714.1 0.15 +1.2 664,835 - Xcc-8004.714.1 0.15 +0.5 664,835 - Xcc-8004.714.1 0.15 -0.7 664,835 - Xcc-8004.714.1 0.15 +0.1 664,835 - Xcc-8004.714.1 0.15 -1.4 665,041 + Xcc-8004.714.1 0.65 +1.1 665,041 + Xcc-8004.714.1 0.65 +0.9 665,041 + Xcc-8004.714.1 0.65 -1.1 665,176 + -1.3 665,290 + -0.8 665,290 + +0.1 665,290 + +0.0 665,290 + -0.7 665,291 - +0.9 665,291 - -0.3 665,291 - -0.7 665,291 - -1.5 665,291 - -0.4 665,291 - +0.4 665,291 - +0.2 665,312 + Xcc-8004.715.1 0.13 -0.2 665,497 + Xcc-8004.715.1 0.49 -0.1 665,498 - Xcc-8004.715.1 0.50 -0.8 665,498 - Xcc-8004.715.1 0.50 +0.4 665,498 - Xcc-8004.715.1 0.50 -0.4 665,656 + Xcc-8004.715.1 0.81 -0.1 665,656 + Xcc-8004.715.1 0.81 +3.0 665,707 + -0.5 665,707 + -0.9 665,707 + +0.3 665,707 + -0.6 665,708 - -0.1 665,708 - -0.4 665,708 - -0.2 665,708 - -0.1 665,708 - +0.5 665,897 + Xcc-8004.716.1 0.13 -1.6 665,898 - Xcc-8004.716.1 0.13 -0.0 665,898 - Xcc-8004.716.1 0.13 -1.0 665,898 - Xcc-8004.716.1 0.13 +0.1 665,898 - Xcc-8004.716.1 0.13 +1.8 665,898 - Xcc-8004.716.1 0.13 -0.6 666,154 + Xcc-8004.716.1 0.38 -1.9 666,155 - Xcc-8004.716.1 0.38 -0.3 666,155 - Xcc-8004.716.1 0.38 +1.1 666,155 - Xcc-8004.716.1 0.38 -1.3 666,155 - Xcc-8004.716.1 0.38 -0.9 666,392 + Xcc-8004.716.1 0.61 -1.2 666,392 + Xcc-8004.716.1 0.61 -0.7 666,393 - Xcc-8004.716.1 0.61 -0.4 666,747 - -0.3
Or see this region's nucleotide sequence