Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.542.1 and Xcc-8004.543.1 overlap by 4 nucleotides Xcc-8004.543.1 and Xcc-8004.544.1 are separated by 42 nucleotides Xcc-8004.544.1 and Xcc-8004.545.1 are separated by 16 nucleotides
Xcc-8004.542.1: Xcc-8004.542.1 - Malto-oligosyltrehalose synthase (EC 5.4.99.15), at 501,673 to 504,291
Xcc-8004.542.1
Xcc-8004.543.1: Xcc-8004.543.1 - FIG01210004: hypothetical protein, at 504,288 to 504,476
Xcc-8004.543.1
Xcc-8004.544.1: Xcc-8004.544.1 - Glycogen debranching enzyme (EC 3.2.1.-), at 504,519 to 506,681
Xcc-8004.544.1
Xcc-8004.545.1: Xcc-8004.545.1 - Nucleoside-diphosphate-sugar epimerases, at 506,698 to 507,330
Xcc-8004.545.1
Position (kb)
504
505
506
507 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 503.773 kb on + strand, within Xcc-8004.542.1 at 503.836 kb on + strand, within Xcc-8004.542.1 at 503.836 kb on + strand, within Xcc-8004.542.1 at 503.837 kb on - strand, within Xcc-8004.542.1 at 503.984 kb on - strand, within Xcc-8004.542.1 at 504.000 kb on - strand, within Xcc-8004.542.1 at 504.000 kb on - strand, within Xcc-8004.542.1 at 504.236 kb on + strand at 504.236 kb on + strand at 504.237 kb on - strand at 504.337 kb on + strand, within Xcc-8004.543.1 at 504.337 kb on + strand, within Xcc-8004.543.1 at 504.337 kb on + strand, within Xcc-8004.543.1 at 504.337 kb on + strand, within Xcc-8004.543.1 at 504.337 kb on + strand, within Xcc-8004.543.1 at 504.338 kb on - strand, within Xcc-8004.543.1 at 504.338 kb on - strand, within Xcc-8004.543.1 at 504.458 kb on + strand at 504.459 kb on - strand at 504.474 kb on + strand at 504.506 kb on + strand at 504.507 kb on - strand at 504.507 kb on - strand at 504.507 kb on - strand at 504.618 kb on + strand at 504.619 kb on - strand at 504.619 kb on - strand at 504.619 kb on - strand at 504.692 kb on - strand at 504.699 kb on + strand at 504.699 kb on + strand at 504.777 kb on + strand, within Xcc-8004.544.1 at 504.777 kb on + strand, within Xcc-8004.544.1 at 504.777 kb on + strand, within Xcc-8004.544.1 at 504.778 kb on - strand, within Xcc-8004.544.1 at 504.812 kb on + strand, within Xcc-8004.544.1 at 504.813 kb on - strand, within Xcc-8004.544.1 at 504.832 kb on - strand, within Xcc-8004.544.1 at 504.832 kb on - strand, within Xcc-8004.544.1 at 504.882 kb on + strand, within Xcc-8004.544.1 at 504.974 kb on + strand, within Xcc-8004.544.1 at 504.974 kb on + strand, within Xcc-8004.544.1 at 504.975 kb on - strand, within Xcc-8004.544.1 at 504.975 kb on - strand, within Xcc-8004.544.1 at 504.975 kb on - strand, within Xcc-8004.544.1 at 505.026 kb on + strand, within Xcc-8004.544.1 at 505.026 kb on + strand, within Xcc-8004.544.1 at 505.026 kb on + strand, within Xcc-8004.544.1 at 505.026 kb on + strand, within Xcc-8004.544.1 at 505.027 kb on - strand, within Xcc-8004.544.1 at 505.191 kb on + strand, within Xcc-8004.544.1 at 505.191 kb on + strand, within Xcc-8004.544.1 at 505.191 kb on + strand, within Xcc-8004.544.1 at 505.191 kb on + strand, within Xcc-8004.544.1 at 505.192 kb on - strand, within Xcc-8004.544.1 at 505.227 kb on + strand, within Xcc-8004.544.1 at 505.227 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.263 kb on + strand, within Xcc-8004.544.1 at 505.264 kb on - strand, within Xcc-8004.544.1 at 505.350 kb on + strand, within Xcc-8004.544.1 at 505.351 kb on - strand, within Xcc-8004.544.1 at 505.419 kb on + strand, within Xcc-8004.544.1 at 505.419 kb on + strand, within Xcc-8004.544.1 at 505.419 kb on + strand, within Xcc-8004.544.1 at 505.420 kb on - strand, within Xcc-8004.544.1 at 505.420 kb on - strand, within Xcc-8004.544.1 at 505.420 kb on - strand, within Xcc-8004.544.1 at 505.450 kb on - strand, within Xcc-8004.544.1 at 505.475 kb on + strand, within Xcc-8004.544.1 at 505.600 kb on - strand, within Xcc-8004.544.1 at 505.705 kb on - strand, within Xcc-8004.544.1 at 505.923 kb on + strand, within Xcc-8004.544.1 at 505.924 kb on - strand, within Xcc-8004.544.1 at 505.924 kb on - strand, within Xcc-8004.544.1 at 505.924 kb on - strand, within Xcc-8004.544.1 at 505.982 kb on + strand, within Xcc-8004.544.1 at 505.982 kb on + strand, within Xcc-8004.544.1 at 505.983 kb on - strand, within Xcc-8004.544.1 at 505.983 kb on - strand, within Xcc-8004.544.1 at 505.995 kb on + strand, within Xcc-8004.544.1 at 505.995 kb on + strand, within Xcc-8004.544.1 at 505.995 kb on + strand, within Xcc-8004.544.1 at 506.126 kb on + strand, within Xcc-8004.544.1 at 506.151 kb on + strand, within Xcc-8004.544.1 at 506.151 kb on + strand, within Xcc-8004.544.1 at 507.058 kb on + strand, within Xcc-8004.545.1 at 507.059 kb on - strand, within Xcc-8004.545.1 at 507.424 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 503,773 + Xcc-8004.542.1 0.80 -0.5 503,836 + Xcc-8004.542.1 0.83 +0.9 503,836 + Xcc-8004.542.1 0.83 -0.1 503,837 - Xcc-8004.542.1 0.83 -1.2 503,984 - Xcc-8004.542.1 0.88 +0.9 504,000 - Xcc-8004.542.1 0.89 +1.5 504,000 - Xcc-8004.542.1 0.89 -1.5 504,236 + -1.1 504,236 + +0.1 504,237 - -0.1 504,337 + Xcc-8004.543.1 0.26 -1.1 504,337 + Xcc-8004.543.1 0.26 +0.3 504,337 + Xcc-8004.543.1 0.26 -0.5 504,337 + Xcc-8004.543.1 0.26 -0.2 504,337 + Xcc-8004.543.1 0.26 -0.7 504,338 - Xcc-8004.543.1 0.26 +0.2 504,338 - Xcc-8004.543.1 0.26 -1.8 504,458 + +0.2 504,459 - -0.2 504,474 + +0.1 504,506 + +0.5 504,507 - -0.2 504,507 - +1.2 504,507 - -0.4 504,618 + +0.3 504,619 - +0.9 504,619 - -0.1 504,619 - +0.2 504,692 - -0.4 504,699 + -1.0 504,699 + -1.4 504,777 + Xcc-8004.544.1 0.12 -0.7 504,777 + Xcc-8004.544.1 0.12 -0.5 504,777 + Xcc-8004.544.1 0.12 -1.1 504,778 - Xcc-8004.544.1 0.12 +0.5 504,812 + Xcc-8004.544.1 0.14 -2.3 504,813 - Xcc-8004.544.1 0.14 +0.9 504,832 - Xcc-8004.544.1 0.14 -1.4 504,832 - Xcc-8004.544.1 0.14 +0.1 504,882 + Xcc-8004.544.1 0.17 -0.4 504,974 + Xcc-8004.544.1 0.21 +0.1 504,974 + Xcc-8004.544.1 0.21 +0.6 504,975 - Xcc-8004.544.1 0.21 +0.0 504,975 - Xcc-8004.544.1 0.21 -0.2 504,975 - Xcc-8004.544.1 0.21 -0.7 505,026 + Xcc-8004.544.1 0.23 +1.0 505,026 + Xcc-8004.544.1 0.23 +0.6 505,026 + Xcc-8004.544.1 0.23 -0.6 505,026 + Xcc-8004.544.1 0.23 +0.4 505,027 - Xcc-8004.544.1 0.23 -0.2 505,191 + Xcc-8004.544.1 0.31 -1.4 505,191 + Xcc-8004.544.1 0.31 +0.8 505,191 + Xcc-8004.544.1 0.31 +0.6 505,191 + Xcc-8004.544.1 0.31 +0.2 505,192 - Xcc-8004.544.1 0.31 -0.7 505,227 + Xcc-8004.544.1 0.33 -0.5 505,227 + Xcc-8004.544.1 0.33 -3.2 505,263 + Xcc-8004.544.1 0.34 +0.4 505,263 + Xcc-8004.544.1 0.34 -1.6 505,263 + Xcc-8004.544.1 0.34 +0.6 505,263 + Xcc-8004.544.1 0.34 -0.7 505,263 + Xcc-8004.544.1 0.34 +0.0 505,263 + Xcc-8004.544.1 0.34 +0.9 505,264 - Xcc-8004.544.1 0.34 +0.7 505,350 + Xcc-8004.544.1 0.38 -0.2 505,351 - Xcc-8004.544.1 0.38 -0.2 505,419 + Xcc-8004.544.1 0.42 +0.9 505,419 + Xcc-8004.544.1 0.42 -0.5 505,419 + Xcc-8004.544.1 0.42 -1.2 505,420 - Xcc-8004.544.1 0.42 +0.0 505,420 - Xcc-8004.544.1 0.42 -1.5 505,420 - Xcc-8004.544.1 0.42 +0.6 505,450 - Xcc-8004.544.1 0.43 +0.4 505,475 + Xcc-8004.544.1 0.44 -0.8 505,600 - Xcc-8004.544.1 0.50 -0.8 505,705 - Xcc-8004.544.1 0.55 -2.1 505,923 + Xcc-8004.544.1 0.65 +0.3 505,924 - Xcc-8004.544.1 0.65 -1.0 505,924 - Xcc-8004.544.1 0.65 -1.7 505,924 - Xcc-8004.544.1 0.65 +0.5 505,982 + Xcc-8004.544.1 0.68 -0.7 505,982 + Xcc-8004.544.1 0.68 -0.1 505,983 - Xcc-8004.544.1 0.68 +0.7 505,983 - Xcc-8004.544.1 0.68 -2.1 505,995 + Xcc-8004.544.1 0.68 -0.6 505,995 + Xcc-8004.544.1 0.68 +0.4 505,995 + Xcc-8004.544.1 0.68 -0.1 506,126 + Xcc-8004.544.1 0.74 -1.8 506,151 + Xcc-8004.544.1 0.75 -0.1 506,151 + Xcc-8004.544.1 0.75 -1.0 507,058 + Xcc-8004.545.1 0.57 -1.3 507,059 - Xcc-8004.545.1 0.57 +1.1 507,424 + +0.6
Or see this region's nucleotide sequence