Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5200.1 and Xcc-8004.5201.1 are separated by 45 nucleotides Xcc-8004.5201.1 and Xcc-8004.5202.1 are separated by 376 nucleotides
Xcc-8004.5200.1: Xcc-8004.5200.1 - hypothetical protein, at 4,936,613 to 4,937,377
Xcc-8004.5200.1
Xcc-8004.5201.1: Xcc-8004.5201.1 - FIG01211164: hypothetical protein, at 4,937,423 to 4,938,322
Xcc-8004.5201.1
Xcc-8004.5202.1: Xcc-8004.5202.1 - Twin-arginine translocation protein TatC, at 4,938,699 to 4,939,436
Xcc-8004.5202.1
Position (kb) 4937
4938
4939 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4936.463 kb on + strand at 4936.463 kb on + strand at 4936.463 kb on + strand at 4936.464 kb on - strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.500 kb on + strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.501 kb on - strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.504 kb on + strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.505 kb on - strand at 4936.517 kb on + strand at 4936.517 kb on + strand at 4936.518 kb on - strand at 4936.518 kb on - strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.523 kb on + strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.524 kb on - strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.527 kb on + strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.528 kb on - strand at 4936.573 kb on - strand at 4936.673 kb on + strand at 4936.674 kb on - strand at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.890 kb on + strand, within Xcc-8004.5200.1 at 4936.891 kb on - strand, within Xcc-8004.5200.1 at 4936.891 kb on - strand, within Xcc-8004.5200.1 at 4936.891 kb on - strand, within Xcc-8004.5200.1 at 4936.901 kb on + strand, within Xcc-8004.5200.1 at 4936.901 kb on + strand, within Xcc-8004.5200.1 at 4936.902 kb on - strand, within Xcc-8004.5200.1 at 4936.902 kb on - strand, within Xcc-8004.5200.1 at 4936.902 kb on - strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.946 kb on + strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4936.947 kb on - strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.097 kb on + strand, within Xcc-8004.5200.1 at 4937.098 kb on - strand, within Xcc-8004.5200.1 at 4937.098 kb on - strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.191 kb on + strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.192 kb on - strand, within Xcc-8004.5200.1 at 4937.201 kb on + strand, within Xcc-8004.5200.1 at 4937.201 kb on + strand, within Xcc-8004.5200.1 at 4937.201 kb on + strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.202 kb on - strand, within Xcc-8004.5200.1 at 4937.375 kb on + strand at 4937.405 kb on + strand at 4938.116 kb on + strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.117 kb on - strand, within Xcc-8004.5201.1 at 4938.235 kb on - strand at 4938.235 kb on - strand at 4938.236 kb on + strand at 4938.237 kb on - strand at 4938.237 kb on - strand at 4938.237 kb on - strand at 4938.324 kb on - strand at 4938.337 kb on + strand at 4938.337 kb on + strand at 4938.337 kb on + strand at 4938.402 kb on - strand at 4938.433 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.490 kb on - strand at 4938.549 kb on - strand at 4938.561 kb on - strand at 4938.561 kb on - strand at 4938.561 kb on - strand at 4938.561 kb on - strand at 4938.585 kb on + strand at 4938.586 kb on - strand at 4938.586 kb on - strand at 4938.586 kb on - strand at 4938.586 kb on - strand at 4938.609 kb on + strand at 4938.609 kb on + strand at 4938.609 kb on + strand at 4938.610 kb on - strand at 4938.610 kb on - strand at 4938.639 kb on - strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.700 kb on + strand at 4938.701 kb on - strand at 4938.701 kb on - strand at 4938.701 kb on - strand at 4938.701 kb on - strand at 4938.748 kb on + strand at 4938.841 kb on + strand, within Xcc-8004.5202.1 at 4938.984 kb on - strand, within Xcc-8004.5202.1 at 4939.048 kb on + strand, within Xcc-8004.5202.1 at 4939.048 kb on + strand, within Xcc-8004.5202.1 at 4939.048 kb on + strand, within Xcc-8004.5202.1 at 4939.048 kb on + strand, within Xcc-8004.5202.1 at 4939.049 kb on - strand, within Xcc-8004.5202.1 at 4939.049 kb on - strand, within Xcc-8004.5202.1 at 4939.049 kb on - strand, within Xcc-8004.5202.1 at 4939.049 kb on - strand, within Xcc-8004.5202.1 at 4939.070 kb on - strand, within Xcc-8004.5202.1 at 4939.126 kb on + strand, within Xcc-8004.5202.1 at 4939.126 kb on + strand, within Xcc-8004.5202.1 at 4939.127 kb on - strand, within Xcc-8004.5202.1 at 4939.127 kb on - strand, within Xcc-8004.5202.1 at 4939.127 kb on - strand, within Xcc-8004.5202.1 at 4939.159 kb on + strand, within Xcc-8004.5202.1 at 4939.159 kb on + strand, within Xcc-8004.5202.1 at 4939.301 kb on - strand, within Xcc-8004.5202.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,936,463 + -1.2 4,936,463 + -0.6 4,936,463 + +0.5 4,936,464 - -0.5 4,936,500 + +0.6 4,936,500 + -1.2 4,936,500 + +0.7 4,936,500 + -1.6 4,936,500 + -1.1 4,936,500 + -0.8 4,936,500 + -1.6 4,936,500 + +0.7 4,936,500 + +1.2 4,936,500 + +0.3 4,936,500 + -0.2 4,936,500 + -1.1 4,936,500 + +0.1 4,936,500 + +0.3 4,936,500 + -0.7 4,936,500 + +1.2 4,936,500 + +0.5 4,936,500 + +0.2 4,936,500 + -0.8 4,936,500 + -1.1 4,936,501 - -1.0 4,936,501 - +0.1 4,936,501 - +0.6 4,936,501 - -0.7 4,936,501 - -0.8 4,936,501 - +1.0 4,936,501 - -1.0 4,936,501 - -0.3 4,936,501 - +1.3 4,936,501 - -0.7 4,936,501 - -1.2 4,936,501 - -0.9 4,936,501 - +1.0 4,936,501 - -0.4 4,936,501 - -2.6 4,936,501 - -1.4 4,936,504 + -1.7 4,936,504 + +0.3 4,936,504 + -1.3 4,936,504 + -0.8 4,936,504 + +0.9 4,936,504 + +0.4 4,936,504 + -0.1 4,936,504 + -0.1 4,936,504 + -1.0 4,936,504 + +0.1 4,936,504 + -1.2 4,936,504 + -1.0 4,936,504 + -0.6 4,936,504 + +0.0 4,936,504 + +0.5 4,936,504 + -1.4 4,936,504 + -1.6 4,936,504 + +0.3 4,936,505 - +1.4 4,936,505 - -3.2 4,936,505 - -0.3 4,936,505 - -0.1 4,936,505 - -0.1 4,936,505 - +0.6 4,936,505 - -0.7 4,936,505 - +0.1 4,936,505 - -2.0 4,936,505 - -1.6 4,936,505 - -1.0 4,936,517 + -0.2 4,936,517 + +1.3 4,936,518 - -0.2 4,936,518 - -1.3 4,936,523 + +2.0 4,936,523 + -1.3 4,936,523 + +0.9 4,936,523 + -1.4 4,936,523 + +2.0 4,936,523 + -0.1 4,936,523 + +0.1 4,936,523 + -0.1 4,936,523 + +0.1 4,936,523 + +0.8 4,936,523 + -0.1 4,936,523 + +0.7 4,936,523 + -0.7 4,936,523 + +1.3 4,936,523 + +0.6 4,936,524 - -0.1 4,936,524 - -0.6 4,936,524 - -0.7 4,936,524 - -0.2 4,936,524 - +1.2 4,936,524 - -0.8 4,936,524 - -1.8 4,936,524 - -0.4 4,936,524 - -0.5 4,936,524 - +2.3 4,936,524 - +1.1 4,936,524 - -2.5 4,936,524 - -0.7 4,936,524 - -0.1 4,936,524 - +0.7 4,936,524 - -0.5 4,936,524 - +0.7 4,936,527 + +0.3 4,936,527 + +0.1 4,936,527 + -0.1 4,936,527 + -0.2 4,936,527 + -0.6 4,936,527 + +0.8 4,936,527 + -0.1 4,936,527 + -0.4 4,936,527 + +1.9 4,936,527 + -0.7 4,936,527 + -0.3 4,936,527 + -1.7 4,936,527 + +0.8 4,936,528 - +0.7 4,936,528 - -1.9 4,936,528 - -0.7 4,936,528 - -0.5 4,936,528 - -1.1 4,936,528 - -0.9 4,936,528 - -0.8 4,936,573 - +0.7 4,936,673 + +1.4 4,936,674 - -0.7 4,936,890 + Xcc-8004.5200.1 0.36 +0.4 4,936,890 + Xcc-8004.5200.1 0.36 -2.6 4,936,890 + Xcc-8004.5200.1 0.36 +1.6 4,936,890 + Xcc-8004.5200.1 0.36 -0.1 4,936,891 - Xcc-8004.5200.1 0.36 +1.0 4,936,891 - Xcc-8004.5200.1 0.36 -1.4 4,936,891 - Xcc-8004.5200.1 0.36 +0.2 4,936,901 + Xcc-8004.5200.1 0.38 -2.2 4,936,901 + Xcc-8004.5200.1 0.38 +1.2 4,936,902 - Xcc-8004.5200.1 0.38 -1.5 4,936,902 - Xcc-8004.5200.1 0.38 -2.0 4,936,902 - Xcc-8004.5200.1 0.38 -1.3 4,936,946 + Xcc-8004.5200.1 0.44 -0.5 4,936,946 + Xcc-8004.5200.1 0.44 +0.8 4,936,946 + Xcc-8004.5200.1 0.44 +0.9 4,936,946 + Xcc-8004.5200.1 0.44 -0.2 4,936,946 + Xcc-8004.5200.1 0.44 -0.2 4,936,946 + Xcc-8004.5200.1 0.44 +0.2 4,936,947 - Xcc-8004.5200.1 0.44 +0.7 4,936,947 - Xcc-8004.5200.1 0.44 -0.5 4,936,947 - Xcc-8004.5200.1 0.44 +0.8 4,936,947 - Xcc-8004.5200.1 0.44 +0.5 4,937,097 + Xcc-8004.5200.1 0.63 -1.2 4,937,097 + Xcc-8004.5200.1 0.63 +0.3 4,937,097 + Xcc-8004.5200.1 0.63 +0.4 4,937,097 + Xcc-8004.5200.1 0.63 -1.9 4,937,098 - Xcc-8004.5200.1 0.63 -1.7 4,937,098 - Xcc-8004.5200.1 0.63 -0.0 4,937,191 + Xcc-8004.5200.1 0.76 -0.5 4,937,191 + Xcc-8004.5200.1 0.76 -0.7 4,937,191 + Xcc-8004.5200.1 0.76 +0.4 4,937,191 + Xcc-8004.5200.1 0.76 +0.8 4,937,192 - Xcc-8004.5200.1 0.76 -1.0 4,937,192 - Xcc-8004.5200.1 0.76 -0.6 4,937,192 - Xcc-8004.5200.1 0.76 +2.3 4,937,192 - Xcc-8004.5200.1 0.76 +0.3 4,937,201 + Xcc-8004.5200.1 0.77 -0.3 4,937,201 + Xcc-8004.5200.1 0.77 -1.3 4,937,201 + Xcc-8004.5200.1 0.77 -0.4 4,937,202 - Xcc-8004.5200.1 0.77 -0.2 4,937,202 - Xcc-8004.5200.1 0.77 +0.0 4,937,202 - Xcc-8004.5200.1 0.77 +1.0 4,937,202 - Xcc-8004.5200.1 0.77 -0.7 4,937,375 + -0.5 4,937,405 + +0.6 4,938,116 + Xcc-8004.5201.1 0.77 -2.3 4,938,117 - Xcc-8004.5201.1 0.77 +0.4 4,938,117 - Xcc-8004.5201.1 0.77 -1.5 4,938,117 - Xcc-8004.5201.1 0.77 -0.2 4,938,117 - Xcc-8004.5201.1 0.77 -1.2 4,938,117 - Xcc-8004.5201.1 0.77 -0.9 4,938,235 - -0.8 4,938,235 - -1.4 4,938,236 + -1.4 4,938,237 - -1.6 4,938,237 - +0.6 4,938,237 - +0.2 4,938,324 - -1.3 4,938,337 + +0.8 4,938,337 + +1.2 4,938,337 + -0.2 4,938,402 - -1.0 4,938,433 - +0.4 4,938,490 - +0.4 4,938,490 - +0.1 4,938,490 - -0.4 4,938,490 - -2.4 4,938,490 - -0.3 4,938,490 - +1.1 4,938,490 - -0.2 4,938,549 - -0.3 4,938,561 - +1.0 4,938,561 - +1.4 4,938,561 - -1.8 4,938,561 - +1.6 4,938,585 + -0.0 4,938,586 - +0.7 4,938,586 - -0.3 4,938,586 - -1.8 4,938,586 - -1.1 4,938,609 + -0.3 4,938,609 + -0.3 4,938,609 + -0.7 4,938,610 - -1.7 4,938,610 - +1.3 4,938,639 - -0.6 4,938,700 + -0.7 4,938,700 + -2.7 4,938,700 + -0.0 4,938,700 + -0.1 4,938,700 + -0.2 4,938,700 + +0.4 4,938,700 + -1.4 4,938,701 - +1.2 4,938,701 - -0.5 4,938,701 - -0.8 4,938,701 - -0.7 4,938,748 + -0.4 4,938,841 + Xcc-8004.5202.1 0.19 -0.1 4,938,984 - Xcc-8004.5202.1 0.39 +0.3 4,939,048 + Xcc-8004.5202.1 0.47 -0.5 4,939,048 + Xcc-8004.5202.1 0.47 +2.0 4,939,048 + Xcc-8004.5202.1 0.47 -2.4 4,939,048 + Xcc-8004.5202.1 0.47 +2.0 4,939,049 - Xcc-8004.5202.1 0.47 +1.8 4,939,049 - Xcc-8004.5202.1 0.47 +0.4 4,939,049 - Xcc-8004.5202.1 0.47 +0.7 4,939,049 - Xcc-8004.5202.1 0.47 +0.4 4,939,070 - Xcc-8004.5202.1 0.50 +1.7 4,939,126 + Xcc-8004.5202.1 0.58 -1.0 4,939,126 + Xcc-8004.5202.1 0.58 +1.4 4,939,127 - Xcc-8004.5202.1 0.58 -0.3 4,939,127 - Xcc-8004.5202.1 0.58 -0.7 4,939,127 - Xcc-8004.5202.1 0.58 -1.4 4,939,159 + Xcc-8004.5202.1 0.62 -1.2 4,939,159 + Xcc-8004.5202.1 0.62 +0.0 4,939,301 - Xcc-8004.5202.1 0.82 -0.9
Or see this region's nucleotide sequence