Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5115.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5114.1 and Xcc-8004.5115.1 are separated by 286 nucleotidesXcc-8004.5115.1 and Xcc-8004.5116.1 are separated by 171 nucleotides Xcc-8004.5114.1: Xcc-8004.5114.1 - ATP-dependent DNA helicase UvrD/PcrA, at 4,846,747 to 4,848,918 Xcc-8004.5114.1 Xcc-8004.5115.1: Xcc-8004.5115.1 - Hydroxyacylglutathione hydrolase (EC 3.1.2.6), at 4,849,205 to 4,850,731 Xcc-8004.5115.1 Xcc-8004.5116.1: Xcc-8004.5116.1 - Cardiolipin synthetase (EC 2.7.8.-), at 4,850,903 to 4,852,327 Xcc-8004.5116.1 Position (kb) 4849 4850 4851Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4848.242 kb on + strand, within Xcc-8004.5114.1at 4848.243 kb on - strand, within Xcc-8004.5114.1at 4848.302 kb on + strand, within Xcc-8004.5114.1at 4848.334 kb on + strand, within Xcc-8004.5114.1at 4848.335 kb on - strand, within Xcc-8004.5114.1at 4848.410 kb on + strand, within Xcc-8004.5114.1at 4848.411 kb on - strand, within Xcc-8004.5114.1at 4848.574 kb on + strand, within Xcc-8004.5114.1at 4848.861 kb on - strandat 4848.861 kb on - strandat 4848.861 kb on - strandat 4848.905 kb on - strandat 4849.074 kb on - strandat 4849.074 kb on - strandat 4849.074 kb on - strandat 4849.114 kb on + strandat 4849.114 kb on + strandat 4849.114 kb on + strandat 4849.115 kb on - strandat 4849.115 kb on - strandat 4849.128 kb on - strandat 4849.361 kb on - strand, within Xcc-8004.5115.1at 4849.361 kb on - strand, within Xcc-8004.5115.1at 4849.561 kb on - strand, within Xcc-8004.5115.1at 4849.668 kb on + strand, within Xcc-8004.5115.1at 4849.669 kb on - strand, within Xcc-8004.5115.1at 4849.725 kb on - strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.277 kb on + strand, within Xcc-8004.5115.1at 4850.278 kb on - strand, within Xcc-8004.5115.1at 4850.278 kb on - strand, within Xcc-8004.5115.1at 4850.278 kb on - strand, within Xcc-8004.5115.1at 4850.278 kb on - strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.279 kb on + strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.280 kb on - strand, within Xcc-8004.5115.1at 4850.352 kb on + strand, within Xcc-8004.5115.1at 4850.353 kb on - strand, within Xcc-8004.5115.1at 4850.353 kb on - strand, within Xcc-8004.5115.1at 4850.440 kb on - strand, within Xcc-8004.5115.1at 4850.440 kb on - strand, within Xcc-8004.5115.1at 4850.607 kb on + strandat 4850.608 kb on - strandat 4850.784 kb on + strandat 4850.784 kb on + strandat 4850.784 kb on + strandat 4850.785 kb on - strandat 4850.785 kb on - strandat 4850.785 kb on - strandat 4850.817 kb on + strandat 4851.006 kb on + strandat 4851.006 kb on + strandat 4851.007 kb on - strandat 4851.032 kb on + strandat 4851.033 kb on - strandat 4851.051 kb on + strand, within Xcc-8004.5116.1at 4851.051 kb on + strand, within Xcc-8004.5116.1at 4851.171 kb on + strand, within Xcc-8004.5116.1at 4851.213 kb on + strand, within Xcc-8004.5116.1at 4851.337 kb on - strand, within Xcc-8004.5116.1at 4851.337 kb on - strand, within Xcc-8004.5116.1at 4851.459 kb on + strand, within Xcc-8004.5116.1at 4851.459 kb on + strand, within Xcc-8004.5116.1at 4851.459 kb on + strand, within Xcc-8004.5116.1at 4851.460 kb on - strand, within Xcc-8004.5116.1at 4851.557 kb on + strand, within Xcc-8004.5116.1at 4851.557 kb on + strand, within Xcc-8004.5116.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,848,242 + Xcc-8004.5114.1 0.69 -0.4
4,848,243 - Xcc-8004.5114.1 0.69 -0.3
4,848,302 + Xcc-8004.5114.1 0.72 -0.3
4,848,334 + Xcc-8004.5114.1 0.73 -1.8
4,848,335 - Xcc-8004.5114.1 0.73 -0.7
4,848,410 + Xcc-8004.5114.1 0.77 -0.3
4,848,411 - Xcc-8004.5114.1 0.77 +2.0
4,848,574 + Xcc-8004.5114.1 0.84 +1.4
4,848,861 - +1.9
4,848,861 - -0.8
4,848,861 - +0.9
4,848,905 - -0.2
4,849,074 - -1.2
4,849,074 - -0.1
4,849,074 - -2.0
4,849,114 + -1.4
4,849,114 + -0.9
4,849,114 + -0.1
4,849,115 - -0.1
4,849,115 - -1.1
4,849,128 - +1.0
4,849,361 - Xcc-8004.5115.1 0.10 -0.4
4,849,361 - Xcc-8004.5115.1 0.10 +1.1
4,849,561 - Xcc-8004.5115.1 0.23 +2.4
4,849,668 + Xcc-8004.5115.1 0.30 -0.7
4,849,669 - Xcc-8004.5115.1 0.30 -0.7
4,849,725 - Xcc-8004.5115.1 0.34 +1.4
4,850,277 + Xcc-8004.5115.1 0.70 -0.9
4,850,277 + Xcc-8004.5115.1 0.70 +0.5
4,850,277 + Xcc-8004.5115.1 0.70 -0.6
4,850,277 + Xcc-8004.5115.1 0.70 -0.5
4,850,277 + Xcc-8004.5115.1 0.70 +0.3
4,850,277 + Xcc-8004.5115.1 0.70 +0.0
4,850,277 + Xcc-8004.5115.1 0.70 -1.0
4,850,277 + Xcc-8004.5115.1 0.70 +1.3
4,850,278 - Xcc-8004.5115.1 0.70 -0.0
4,850,278 - Xcc-8004.5115.1 0.70 +0.8
4,850,278 - Xcc-8004.5115.1 0.70 +1.3
4,850,278 - Xcc-8004.5115.1 0.70 +0.8
4,850,279 + Xcc-8004.5115.1 0.70 +1.3
4,850,279 + Xcc-8004.5115.1 0.70 +0.7
4,850,279 + Xcc-8004.5115.1 0.70 +1.0
4,850,279 + Xcc-8004.5115.1 0.70 -0.4
4,850,279 + Xcc-8004.5115.1 0.70 +0.8
4,850,279 + Xcc-8004.5115.1 0.70 -1.0
4,850,279 + Xcc-8004.5115.1 0.70 +0.3
4,850,279 + Xcc-8004.5115.1 0.70 -0.1
4,850,279 + Xcc-8004.5115.1 0.70 -0.1
4,850,279 + Xcc-8004.5115.1 0.70 +0.2
4,850,280 - Xcc-8004.5115.1 0.70 +1.2
4,850,280 - Xcc-8004.5115.1 0.70 -2.1
4,850,280 - Xcc-8004.5115.1 0.70 -2.3
4,850,280 - Xcc-8004.5115.1 0.70 -0.3
4,850,280 - Xcc-8004.5115.1 0.70 +0.2
4,850,280 - Xcc-8004.5115.1 0.70 -0.6
4,850,280 - Xcc-8004.5115.1 0.70 -1.3
4,850,280 - Xcc-8004.5115.1 0.70 +1.6
4,850,280 - Xcc-8004.5115.1 0.70 +1.4
4,850,280 - Xcc-8004.5115.1 0.70 -0.7
4,850,280 - Xcc-8004.5115.1 0.70 -0.2
4,850,280 - Xcc-8004.5115.1 0.70 -0.6
4,850,352 + Xcc-8004.5115.1 0.75 -0.8
4,850,353 - Xcc-8004.5115.1 0.75 +0.4
4,850,353 - Xcc-8004.5115.1 0.75 -0.1
4,850,440 - Xcc-8004.5115.1 0.81 +0.4
4,850,440 - Xcc-8004.5115.1 0.81 +2.6
4,850,607 + -0.0
4,850,608 - +0.7
4,850,784 + -3.1
4,850,784 + -1.1
4,850,784 + +0.8
4,850,785 - +0.3
4,850,785 - +0.4
4,850,785 - +0.7
4,850,817 + -0.8
4,851,006 + -0.5
4,851,006 + -0.3
4,851,007 - +0.3
4,851,032 + -0.4
4,851,033 - +0.2
4,851,051 + Xcc-8004.5116.1 0.10 -0.7
4,851,051 + Xcc-8004.5116.1 0.10 +0.3
4,851,171 + Xcc-8004.5116.1 0.19 -0.7
4,851,213 + Xcc-8004.5116.1 0.22 -1.6
4,851,337 - Xcc-8004.5116.1 0.30 -0.1
4,851,337 - Xcc-8004.5116.1 0.30 -2.5
4,851,459 + Xcc-8004.5116.1 0.39 -0.1
4,851,459 + Xcc-8004.5116.1 0.39 +0.5
4,851,459 + Xcc-8004.5116.1 0.39 +0.2
4,851,460 - Xcc-8004.5116.1 0.39 -1.1
4,851,557 + Xcc-8004.5116.1 0.46 +0.4
4,851,557 + Xcc-8004.5116.1 0.46 +0.3

Or see this region's nucleotide sequence