Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5110.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,844,370	+				-0.3
4,844,370	+				-0.7
4,844,370	+				-1.1
4,844,371	-				+0.0
4,844,371	-				+0.4
4,844,371	-				+2.4
4,844,426	+				+0.9
4,844,426	+				-0.2
4,844,426	+				+0.1
4,844,426	+				-0.3
4,844,426	+				+1.3
4,844,426	+				-0.1
4,844,427	-				+0.2
4,844,461	+				+0.7
4,844,462	-				+0.3
4,844,462	-				-2.1
4,844,523	+				-0.1
4,844,523	+				-0.7
4,844,523	+				+0.5
4,844,580	+				-0.8
4,844,580	+				+0.4
4,844,580	+				-1.9
4,844,614	+				+0.5
4,844,614	+				+0.3
4,844,614	+				+0.8
4,844,615	-				-0.0
4,844,615	-				+1.5
4,844,677	+				+0.9
4,844,678	-				-1.1
4,844,678	-				+0.4
4,844,696	+				-0.7
4,844,815	-		Xcc-8004.5110.1	0.15	+0.4
4,845,010	+		Xcc-8004.5110.1	0.59	+0.7
4,845,055	+		Xcc-8004.5110.1	0.69	-1.6
4,845,056	-		Xcc-8004.5110.1	0.69	+0.2
4,845,056	-		Xcc-8004.5110.1	0.69	+0.0
4,845,056	-		Xcc-8004.5110.1	0.69	-0.4
4,845,056	-		Xcc-8004.5110.1	0.69	+0.5
4,845,056	-		Xcc-8004.5110.1	0.69	+0.2
4,845,056	-		Xcc-8004.5110.1	0.69	-0.7
4,845,056	-		Xcc-8004.5110.1	0.69	-0.8
4,845,056	-		Xcc-8004.5110.1	0.69	-1.3
4,845,056	-		Xcc-8004.5110.1	0.69	-0.6
4,845,056	-		Xcc-8004.5110.1	0.69	+0.1
4,845,182	+				-0.1
4,845,182	+				-0.4
4,845,182	+				-0.1
4,845,182	+				+0.2
4,845,183	-				+0.8
4,845,183	-				-2.3
4,845,183	-				-0.3
4,845,183	-				+1.1
4,845,190	+				-0.2
4,845,190	+				+0.2
4,845,190	+				+0.7
4,845,190	+				+0.4
4,845,190	+				-0.6
4,845,190	+				-0.2
4,845,190	+				-0.4
4,845,190	+				-0.9
4,845,190	+				+0.0
4,845,190	+				-0.1
4,845,191	-				+0.7
4,845,191	-				+1.6
4,845,191	-				-0.5
4,845,191	-				+0.1
4,845,191	-				-0.4
4,845,191	-				+0.0
4,845,191	-				+0.9
4,845,191	-				+0.8
4,845,191	-				+0.7
4,845,191	-				+1.2
4,845,257	+				+0.9
4,845,257	+				-0.1
4,845,471	+		Xcc-8004.5112.1	0.29	+0.1
4,845,471	+		Xcc-8004.5112.1	0.29	+0.5
4,845,471	+		Xcc-8004.5112.1	0.29	-0.9
4,845,471	+		Xcc-8004.5112.1	0.29	+0.9
4,845,471	+		Xcc-8004.5112.1	0.29	-0.1
4,845,471	+		Xcc-8004.5112.1	0.29	+0.3
4,845,471	+		Xcc-8004.5112.1	0.29	-0.4
4,845,472	-		Xcc-8004.5112.1	0.29	-0.6
4,845,472	-		Xcc-8004.5112.1	0.29	+0.6
4,845,472	-		Xcc-8004.5112.1	0.29	+0.5
4,845,472	-		Xcc-8004.5112.1	0.29	-0.0
4,845,472	-		Xcc-8004.5112.1	0.29	-0.9
4,845,472	-		Xcc-8004.5112.1	0.29	+0.9
4,845,472	-		Xcc-8004.5112.1	0.29	+0.3
4,845,472	-		Xcc-8004.5112.1	0.29	-0.7
4,845,472	-		Xcc-8004.5112.1	0.29	+2.4
4,845,472	-		Xcc-8004.5112.1	0.29	-1.2
4,845,472	-		Xcc-8004.5112.1	0.29	-1.4
4,845,549	-		Xcc-8004.5112.1	0.42	-0.3
4,845,549	-		Xcc-8004.5112.1	0.42	-0.8
4,845,659	+		Xcc-8004.5112.1	0.61	-0.3
4,845,659	+		Xcc-8004.5112.1	0.61	-0.6
4,845,659	+		Xcc-8004.5112.1	0.61	-0.5
4,845,659	+		Xcc-8004.5112.1	0.61	-0.2
4,845,659	+		Xcc-8004.5112.1	0.61	+0.9
4,845,659	+		Xcc-8004.5112.1	0.61	-0.1
4,845,660	-		Xcc-8004.5112.1	0.61	+0.3
4,845,660	-		Xcc-8004.5112.1	0.61	+0.3
4,845,660	-		Xcc-8004.5112.1	0.61	-0.2
4,845,660	-		Xcc-8004.5112.1	0.61	-0.0
4,845,660	-		Xcc-8004.5112.1	0.61	-0.9
4,845,665	+		Xcc-8004.5112.1	0.62	+0.6
4,845,665	+		Xcc-8004.5112.1	0.62	+0.3
4,845,666	-		Xcc-8004.5112.1	0.62	-0.4
4,845,773	+		Xcc-8004.5112.1	0.80	+1.1
4,845,773	+		Xcc-8004.5112.1	0.80	+1.6
4,845,774	-		Xcc-8004.5112.1	0.80	+0.7
4,845,774	-		Xcc-8004.5112.1	0.80	-0.6
4,845,774	-		Xcc-8004.5112.1	0.80	-1.2
4,845,836	+				+1.4
4,845,894	+				-0.3
4,845,894	+				+0.9
4,845,894	+				-0.6
4,845,894	+				-0.8
4,845,894	+				+0.1
4,845,894	+				+2.4
4,845,895	-				-0.3
4,845,895	-				+1.0
4,845,895	-				-0.2
4,845,895	-				+0.8
4,846,005	-				-0.8
4,846,006	+				-0.8
4,846,006	+				+0.3
4,846,006	+				+0.3
4,846,006	+				-0.1
4,846,006	+				+0.5
4,846,007	-				-1.6
4,846,007	-				-2.4
4,846,007	-				+0.2
4,846,007	-				-0.9
4,846,007	-				-1.5
4,846,007	-				+2.0
4,846,037	+				-1.4
4,846,037	+				+0.5
4,846,037	+				-2.0
4,846,038	-				+2.0
4,846,038	-				+1.2
4,846,040	+				-1.3
4,846,040	+				+0.2
4,846,040	+				+0.1
4,846,041	-				-2.5
4,846,080	+				+0.1
4,846,081	-				-0.4
4,846,102	+				+0.2
4,846,147	+				+0.1
4,846,147	+				-0.7
4,846,147	+				+0.4
4,846,147	+				+0.7
4,846,148	-				-0.3
4,846,148	-				-0.0
4,846,148	-				+0.3
4,846,148	-				+1.0
4,846,148	-				+1.3
4,846,148	-				+0.2
4,846,151	+				+1.7
4,846,151	+				+1.2
4,846,151	+				-0.1
4,846,151	+				+0.4
4,846,151	+				+1.0
4,846,151	+				+0.2
4,846,152	-				-0.3
4,846,152	-				+1.1
4,846,152	-				-0.4
4,846,152	-				-0.9
4,846,152	-				-0.7
4,846,152	-				+0.5
4,846,152	-				-0.1
4,846,152	-				-0.9
4,846,155	-				+0.4
4,846,155	-				+0.5
4,846,155	-				+1.9