Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4994.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4993.1 and Xcc-8004.4994.1 are separated by 96 nucleotidesXcc-8004.4994.1 and Xcc-8004.4996.1 are separated by 107 nucleotidesXcc-8004.4996.1 and Xcc-8004.4999.1 are separated by 169 nucleotides Xcc-8004.4993.1: Xcc-8004.4993.1 - hypothetical protein, at 4,736,418 to 4,737,371 Xcc-8004.4993.1 Xcc-8004.4994.1: Xcc-8004.4994.1 - putative; ORF located using Glimmer/Genemark, at 4,737,468 to 4,737,896 Xcc-8004.4994.1 Xcc-8004.4996.1: Xcc-8004.4996.1 - FIG01213627: hypothetical protein, at 4,738,004 to 4,738,393 Xcc-8004.4996.1 Xcc-8004.4999.1: Xcc-8004.4999.1 - FIG01211448: hypothetical protein, at 4,738,563 to 4,739,300 Xcc-8004.4999.1 Position (kb) 4737 4738Strain fitness (log2 ratio) -2 -1 0 1at 4736.675 kb on - strand, within Xcc-8004.4993.1at 4737.055 kb on + strand, within Xcc-8004.4993.1at 4737.055 kb on + strand, within Xcc-8004.4993.1at 4737.055 kb on + strand, within Xcc-8004.4993.1at 4737.055 kb on + strand, within Xcc-8004.4993.1at 4737.055 kb on + strand, within Xcc-8004.4993.1at 4737.055 kb on + strand, within Xcc-8004.4993.1at 4737.055 kb on + strand, within Xcc-8004.4993.1at 4737.055 kb on + strand, within Xcc-8004.4993.1at 4737.056 kb on - strand, within Xcc-8004.4993.1at 4737.056 kb on - strand, within Xcc-8004.4993.1at 4737.056 kb on - strand, within Xcc-8004.4993.1at 4737.056 kb on - strand, within Xcc-8004.4993.1at 4737.056 kb on - strand, within Xcc-8004.4993.1at 4737.056 kb on - strand, within Xcc-8004.4993.1at 4737.056 kb on - strand, within Xcc-8004.4993.1at 4737.348 kb on - strandat 4737.348 kb on - strandat 4737.348 kb on - strandat 4737.434 kb on + strandat 4737.434 kb on + strandat 4737.435 kb on - strandat 4737.435 kb on - strandat 4737.480 kb on - strandat 4737.570 kb on + strand, within Xcc-8004.4994.1at 4737.570 kb on + strand, within Xcc-8004.4994.1at 4737.570 kb on + strand, within Xcc-8004.4994.1at 4737.570 kb on + strand, within Xcc-8004.4994.1at 4737.570 kb on + strand, within Xcc-8004.4994.1at 4737.570 kb on + strand, within Xcc-8004.4994.1at 4737.571 kb on - strand, within Xcc-8004.4994.1at 4737.571 kb on - strand, within Xcc-8004.4994.1at 4737.642 kb on + strand, within Xcc-8004.4994.1at 4737.642 kb on + strand, within Xcc-8004.4994.1at 4737.642 kb on + strand, within Xcc-8004.4994.1at 4737.643 kb on - strand, within Xcc-8004.4994.1at 4737.643 kb on - strand, within Xcc-8004.4994.1at 4737.643 kb on - strand, within Xcc-8004.4994.1at 4737.643 kb on - strand, within Xcc-8004.4994.1at 4737.690 kb on + strand, within Xcc-8004.4994.1at 4737.690 kb on + strand, within Xcc-8004.4994.1at 4737.691 kb on - strand, within Xcc-8004.4994.1at 4737.691 kb on - strand, within Xcc-8004.4994.1at 4737.691 kb on - strand, within Xcc-8004.4994.1at 4737.691 kb on - strand, within Xcc-8004.4994.1at 4737.691 kb on - strand, within Xcc-8004.4994.1at 4737.691 kb on - strand, within Xcc-8004.4994.1at 4737.691 kb on - strand, within Xcc-8004.4994.1at 4737.968 kb on + strandat 4737.968 kb on + strandat 4737.969 kb on - strandat 4737.969 kb on - strandat 4737.969 kb on - strandat 4737.969 kb on - strandat 4738.031 kb on + strandat 4738.031 kb on + strandat 4738.031 kb on + strandat 4738.031 kb on + strandat 4738.031 kb on + strandat 4738.031 kb on + strandat 4738.032 kb on - strandat 4738.032 kb on - strandat 4738.032 kb on - strandat 4738.032 kb on - strandat 4738.032 kb on - strandat 4738.032 kb on - strandat 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.220 kb on + strand, within Xcc-8004.4996.1at 4738.221 kb on - strand, within Xcc-8004.4996.1at 4738.221 kb on - strand, within Xcc-8004.4996.1at 4738.221 kb on - strand, within Xcc-8004.4996.1at 4738.221 kb on - strand, within Xcc-8004.4996.1at 4738.221 kb on - strand, within Xcc-8004.4996.1at 4738.221 kb on - strand, within Xcc-8004.4996.1at 4738.221 kb on - strand, within Xcc-8004.4996.1at 4738.221 kb on - strand, within Xcc-8004.4996.1at 4738.221 kb on - strand, within Xcc-8004.4996.1at 4738.221 kb on - strand, within Xcc-8004.4996.1at 4738.452 kb on + strandat 4738.452 kb on + strandat 4738.452 kb on + strandat 4738.452 kb on + strandat 4738.452 kb on + strandat 4738.453 kb on - strandat 4738.453 kb on - strandat 4738.453 kb on - strandat 4738.453 kb on - strandat 4738.453 kb on - strandat 4738.453 kb on - strandat 4738.453 kb on - strandat 4738.453 kb on - strandat 4738.564 kb on + strandat 4738.565 kb on - strandat 4738.565 kb on - strandat 4738.565 kb on - strandat 4738.584 kb on + strandat 4738.584 kb on + strandat 4738.584 kb on + strandat 4738.585 kb on - strandat 4738.585 kb on - strandat 4738.585 kb on - strandat 4738.756 kb on + strand, within Xcc-8004.4999.1at 4738.757 kb on - strand, within Xcc-8004.4999.1at 4738.801 kb on + strand, within Xcc-8004.4999.1at 4738.801 kb on + strand, within Xcc-8004.4999.1at 4738.801 kb on + strand, within Xcc-8004.4999.1at 4738.801 kb on + strand, within Xcc-8004.4999.1at 4738.801 kb on + strand, within Xcc-8004.4999.1at 4738.801 kb on + strand, within Xcc-8004.4999.1at 4738.801 kb on + strand, within Xcc-8004.4999.1at 4738.801 kb on + strand, within Xcc-8004.4999.1at 4738.801 kb on + strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.802 kb on - strand, within Xcc-8004.4999.1at 4738.804 kb on + strand, within Xcc-8004.4999.1at 4738.805 kb on - strand, within Xcc-8004.4999.1at 4738.805 kb on - strand, within Xcc-8004.4999.1at 4738.805 kb on - strand, within Xcc-8004.4999.1at 4738.892 kb on + strand, within Xcc-8004.4999.1at 4738.892 kb on + strand, within Xcc-8004.4999.1at 4738.892 kb on + strand, within Xcc-8004.4999.1at 4738.892 kb on + strand, within Xcc-8004.4999.1at 4738.892 kb on + strand, within Xcc-8004.4999.1at 4738.892 kb on + strand, within Xcc-8004.4999.1at 4738.893 kb on - strand, within Xcc-8004.4999.1at 4738.893 kb on - strand, within Xcc-8004.4999.1at 4738.893 kb on - strand, within Xcc-8004.4999.1at 4738.893 kb on - strand, within Xcc-8004.4999.1at 4738.893 kb on - strand, within Xcc-8004.4999.1at 4738.893 kb on - strand, within Xcc-8004.4999.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,736,675 - Xcc-8004.4993.1 0.27 +0.2
4,737,055 + Xcc-8004.4993.1 0.67 +1.4
4,737,055 + Xcc-8004.4993.1 0.67 -0.6
4,737,055 + Xcc-8004.4993.1 0.67 +0.1
4,737,055 + Xcc-8004.4993.1 0.67 +0.3
4,737,055 + Xcc-8004.4993.1 0.67 +1.7
4,737,055 + Xcc-8004.4993.1 0.67 -1.5
4,737,055 + Xcc-8004.4993.1 0.67 -0.1
4,737,055 + Xcc-8004.4993.1 0.67 +0.2
4,737,056 - Xcc-8004.4993.1 0.67 -0.7
4,737,056 - Xcc-8004.4993.1 0.67 -1.6
4,737,056 - Xcc-8004.4993.1 0.67 -0.0
4,737,056 - Xcc-8004.4993.1 0.67 -0.2
4,737,056 - Xcc-8004.4993.1 0.67 -1.2
4,737,056 - Xcc-8004.4993.1 0.67 -1.0
4,737,056 - Xcc-8004.4993.1 0.67 +1.1
4,737,348 - -0.3
4,737,348 - -1.4
4,737,348 - +0.7
4,737,434 + -0.3
4,737,434 + +0.2
4,737,435 - -0.4
4,737,435 - +0.4
4,737,480 - +0.4
4,737,570 + Xcc-8004.4994.1 0.24 +0.2
4,737,570 + Xcc-8004.4994.1 0.24 +0.1
4,737,570 + Xcc-8004.4994.1 0.24 +0.2
4,737,570 + Xcc-8004.4994.1 0.24 +0.4
4,737,570 + Xcc-8004.4994.1 0.24 -1.2
4,737,570 + Xcc-8004.4994.1 0.24 +0.3
4,737,571 - Xcc-8004.4994.1 0.24 -0.4
4,737,571 - Xcc-8004.4994.1 0.24 -0.8
4,737,642 + Xcc-8004.4994.1 0.41 -0.5
4,737,642 + Xcc-8004.4994.1 0.41 +0.1
4,737,642 + Xcc-8004.4994.1 0.41 -1.2
4,737,643 - Xcc-8004.4994.1 0.41 -0.3
4,737,643 - Xcc-8004.4994.1 0.41 +0.3
4,737,643 - Xcc-8004.4994.1 0.41 -1.7
4,737,643 - Xcc-8004.4994.1 0.41 +0.2
4,737,690 + Xcc-8004.4994.1 0.52 +0.2
4,737,690 + Xcc-8004.4994.1 0.52 -1.3
4,737,691 - Xcc-8004.4994.1 0.52 -1.6
4,737,691 - Xcc-8004.4994.1 0.52 -0.7
4,737,691 - Xcc-8004.4994.1 0.52 -0.0
4,737,691 - Xcc-8004.4994.1 0.52 -1.5
4,737,691 - Xcc-8004.4994.1 0.52 -0.1
4,737,691 - Xcc-8004.4994.1 0.52 -1.6
4,737,691 - Xcc-8004.4994.1 0.52 -0.4
4,737,968 + -2.1
4,737,968 + +0.2
4,737,969 - -0.5
4,737,969 - -1.9
4,737,969 - +0.7
4,737,969 - +0.4
4,738,031 + +0.5
4,738,031 + +0.0
4,738,031 + +1.3
4,738,031 + -0.2
4,738,031 + -1.1
4,738,031 + +0.7
4,738,032 - -0.4
4,738,032 - +1.2
4,738,032 - +0.4
4,738,032 - -0.6
4,738,032 - -1.6
4,738,032 - +1.1
4,738,220 + Xcc-8004.4996.1 0.55 -1.5
4,738,220 + Xcc-8004.4996.1 0.55 +0.0
4,738,220 + Xcc-8004.4996.1 0.55 -1.5
4,738,220 + Xcc-8004.4996.1 0.55 -0.3
4,738,220 + Xcc-8004.4996.1 0.55 +0.4
4,738,220 + Xcc-8004.4996.1 0.55 +1.4
4,738,220 + Xcc-8004.4996.1 0.55 -0.6
4,738,220 + Xcc-8004.4996.1 0.55 +0.6
4,738,220 + Xcc-8004.4996.1 0.55 -0.6
4,738,220 + Xcc-8004.4996.1 0.55 -0.1
4,738,220 + Xcc-8004.4996.1 0.55 -2.1
4,738,220 + Xcc-8004.4996.1 0.55 -0.6
4,738,220 + Xcc-8004.4996.1 0.55 +1.0
4,738,221 - Xcc-8004.4996.1 0.56 +0.4
4,738,221 - Xcc-8004.4996.1 0.56 +0.2
4,738,221 - Xcc-8004.4996.1 0.56 +0.2
4,738,221 - Xcc-8004.4996.1 0.56 -0.2
4,738,221 - Xcc-8004.4996.1 0.56 -0.4
4,738,221 - Xcc-8004.4996.1 0.56 +0.2
4,738,221 - Xcc-8004.4996.1 0.56 +0.7
4,738,221 - Xcc-8004.4996.1 0.56 -0.1
4,738,221 - Xcc-8004.4996.1 0.56 -1.6
4,738,221 - Xcc-8004.4996.1 0.56 +0.4
4,738,452 + -0.2
4,738,452 + -0.2
4,738,452 + +0.6
4,738,452 + -0.1
4,738,452 + +0.0
4,738,453 - -2.3
4,738,453 - -0.0
4,738,453 - +0.9
4,738,453 - -1.3
4,738,453 - +1.1
4,738,453 - -1.8
4,738,453 - -0.4
4,738,453 - +0.1
4,738,564 + -0.1
4,738,565 - -0.1
4,738,565 - -0.6
4,738,565 - -1.8
4,738,584 + -0.9
4,738,584 + -0.2
4,738,584 + +1.3
4,738,585 - -1.9
4,738,585 - -0.9
4,738,585 - -0.2
4,738,756 + Xcc-8004.4999.1 0.26 -1.3
4,738,757 - Xcc-8004.4999.1 0.26 -0.3
4,738,801 + Xcc-8004.4999.1 0.32 +0.4
4,738,801 + Xcc-8004.4999.1 0.32 -0.6
4,738,801 + Xcc-8004.4999.1 0.32 -0.7
4,738,801 + Xcc-8004.4999.1 0.32 +0.6
4,738,801 + Xcc-8004.4999.1 0.32 -0.1
4,738,801 + Xcc-8004.4999.1 0.32 -0.6
4,738,801 + Xcc-8004.4999.1 0.32 -1.9
4,738,801 + Xcc-8004.4999.1 0.32 -0.6
4,738,801 + Xcc-8004.4999.1 0.32 +0.8
4,738,802 - Xcc-8004.4999.1 0.32 +0.8
4,738,802 - Xcc-8004.4999.1 0.32 -0.2
4,738,802 - Xcc-8004.4999.1 0.32 +0.4
4,738,802 - Xcc-8004.4999.1 0.32 -0.3
4,738,802 - Xcc-8004.4999.1 0.32 +1.6
4,738,802 - Xcc-8004.4999.1 0.32 -1.1
4,738,802 - Xcc-8004.4999.1 0.32 +0.9
4,738,802 - Xcc-8004.4999.1 0.32 +1.1
4,738,802 - Xcc-8004.4999.1 0.32 -1.1
4,738,802 - Xcc-8004.4999.1 0.32 +0.7
4,738,802 - Xcc-8004.4999.1 0.32 -0.9
4,738,802 - Xcc-8004.4999.1 0.32 +0.8
4,738,802 - Xcc-8004.4999.1 0.32 +1.6
4,738,804 + Xcc-8004.4999.1 0.33 +0.2
4,738,805 - Xcc-8004.4999.1 0.33 -0.2
4,738,805 - Xcc-8004.4999.1 0.33 -0.5
4,738,805 - Xcc-8004.4999.1 0.33 -0.6
4,738,892 + Xcc-8004.4999.1 0.45 -0.3
4,738,892 + Xcc-8004.4999.1 0.45 -0.8
4,738,892 + Xcc-8004.4999.1 0.45 +0.3
4,738,892 + Xcc-8004.4999.1 0.45 -0.7
4,738,892 + Xcc-8004.4999.1 0.45 +0.3
4,738,892 + Xcc-8004.4999.1 0.45 +0.5
4,738,893 - Xcc-8004.4999.1 0.45 -0.9
4,738,893 - Xcc-8004.4999.1 0.45 -0.2
4,738,893 - Xcc-8004.4999.1 0.45 -1.2
4,738,893 - Xcc-8004.4999.1 0.45 +0.8
4,738,893 - Xcc-8004.4999.1 0.45 -0.1
4,738,893 - Xcc-8004.4999.1 0.45 +0.1

Or see this region's nucleotide sequence