Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4992.1 and Xcc-8004.4993.1 are separated by 290 nucleotides Xcc-8004.4993.1 and Xcc-8004.4994.1 are separated by 96 nucleotides Xcc-8004.4994.1 and Xcc-8004.4996.1 are separated by 107 nucleotides
Xcc-8004.4992.1: Xcc-8004.4992.1 - Thymidylate kinase (EC 2.7.4.9), at 4,735,471 to 4,736,127
Xcc-8004.4992.1
Xcc-8004.4993.1: Xcc-8004.4993.1 - hypothetical protein, at 4,736,418 to 4,737,371
Xcc-8004.4993.1
Xcc-8004.4994.1: Xcc-8004.4994.1 - putative; ORF located using Glimmer/Genemark, at 4,737,468 to 4,737,896
Xcc-8004.4994.1
Xcc-8004.4996.1: Xcc-8004.4996.1 - FIG01213627: hypothetical protein, at 4,738,004 to 4,738,393
Xcc-8004.4996.1
Position (kb) 4736
4737
4738 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4735.432 kb on + strand at 4735.432 kb on + strand at 4735.437 kb on + strand at 4735.437 kb on + strand at 4735.449 kb on + strand at 4736.105 kb on + strand at 4736.139 kb on + strand at 4736.139 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.196 kb on - strand at 4736.196 kb on - strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.306 kb on - strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.313 kb on - strand at 4736.313 kb on - strand at 4736.313 kb on - strand at 4736.675 kb on - strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.348 kb on - strand at 4737.348 kb on - strand at 4737.348 kb on - strand at 4737.434 kb on + strand at 4737.434 kb on + strand at 4737.435 kb on - strand at 4737.435 kb on - strand at 4737.480 kb on - strand at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.570 kb on + strand, within Xcc-8004.4994.1 at 4737.571 kb on - strand, within Xcc-8004.4994.1 at 4737.571 kb on - strand, within Xcc-8004.4994.1 at 4737.642 kb on + strand, within Xcc-8004.4994.1 at 4737.642 kb on + strand, within Xcc-8004.4994.1 at 4737.642 kb on + strand, within Xcc-8004.4994.1 at 4737.643 kb on - strand, within Xcc-8004.4994.1 at 4737.643 kb on - strand, within Xcc-8004.4994.1 at 4737.643 kb on - strand, within Xcc-8004.4994.1 at 4737.643 kb on - strand, within Xcc-8004.4994.1 at 4737.690 kb on + strand, within Xcc-8004.4994.1 at 4737.690 kb on + strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.691 kb on - strand, within Xcc-8004.4994.1 at 4737.968 kb on + strand at 4737.968 kb on + strand at 4737.969 kb on - strand at 4737.969 kb on - strand at 4737.969 kb on - strand at 4737.969 kb on - strand at 4738.031 kb on + strand at 4738.031 kb on + strand at 4738.031 kb on + strand at 4738.031 kb on + strand at 4738.031 kb on + strand at 4738.031 kb on + strand at 4738.032 kb on - strand at 4738.032 kb on - strand at 4738.032 kb on - strand at 4738.032 kb on - strand at 4738.032 kb on - strand at 4738.032 kb on - strand at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.220 kb on + strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1 at 4738.221 kb on - strand, within Xcc-8004.4996.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,735,432 + -2.0 4,735,432 + +0.4 4,735,437 + -0.3 4,735,437 + -0.9 4,735,449 + +0.9 4,736,105 + +1.3 4,736,139 + -0.0 4,736,139 + +0.5 4,736,195 + +0.7 4,736,195 + -0.1 4,736,195 + +0.7 4,736,195 + -0.6 4,736,195 + +0.6 4,736,196 - +1.4 4,736,196 - -1.3 4,736,199 + +1.0 4,736,199 + -0.9 4,736,199 + -0.2 4,736,199 + -0.6 4,736,199 + +0.6 4,736,199 + -0.7 4,736,199 + -0.3 4,736,199 + -0.1 4,736,199 + +0.8 4,736,199 + -0.2 4,736,199 + -0.0 4,736,199 + -1.2 4,736,200 - -0.4 4,736,200 - +1.1 4,736,200 - +0.6 4,736,200 - +0.1 4,736,200 - -0.1 4,736,200 - +1.5 4,736,306 - +0.4 4,736,312 + +1.9 4,736,312 + +0.3 4,736,312 + -0.3 4,736,312 + +0.0 4,736,312 + -0.5 4,736,312 + -2.1 4,736,313 - +0.2 4,736,313 - -0.1 4,736,313 - +2.6 4,736,675 - Xcc-8004.4993.1 0.27 +0.2 4,737,055 + Xcc-8004.4993.1 0.67 +1.4 4,737,055 + Xcc-8004.4993.1 0.67 -0.6 4,737,055 + Xcc-8004.4993.1 0.67 +0.1 4,737,055 + Xcc-8004.4993.1 0.67 +0.3 4,737,055 + Xcc-8004.4993.1 0.67 +1.7 4,737,055 + Xcc-8004.4993.1 0.67 -1.5 4,737,055 + Xcc-8004.4993.1 0.67 -0.1 4,737,055 + Xcc-8004.4993.1 0.67 +0.2 4,737,056 - Xcc-8004.4993.1 0.67 -0.7 4,737,056 - Xcc-8004.4993.1 0.67 -1.6 4,737,056 - Xcc-8004.4993.1 0.67 -0.0 4,737,056 - Xcc-8004.4993.1 0.67 -0.2 4,737,056 - Xcc-8004.4993.1 0.67 -1.2 4,737,056 - Xcc-8004.4993.1 0.67 -1.0 4,737,056 - Xcc-8004.4993.1 0.67 +1.1 4,737,348 - -0.3 4,737,348 - -1.4 4,737,348 - +0.7 4,737,434 + -0.3 4,737,434 + +0.2 4,737,435 - -0.4 4,737,435 - +0.4 4,737,480 - +0.4 4,737,570 + Xcc-8004.4994.1 0.24 +0.2 4,737,570 + Xcc-8004.4994.1 0.24 +0.1 4,737,570 + Xcc-8004.4994.1 0.24 +0.2 4,737,570 + Xcc-8004.4994.1 0.24 +0.4 4,737,570 + Xcc-8004.4994.1 0.24 -1.2 4,737,570 + Xcc-8004.4994.1 0.24 +0.3 4,737,571 - Xcc-8004.4994.1 0.24 -0.4 4,737,571 - Xcc-8004.4994.1 0.24 -0.8 4,737,642 + Xcc-8004.4994.1 0.41 -0.5 4,737,642 + Xcc-8004.4994.1 0.41 +0.1 4,737,642 + Xcc-8004.4994.1 0.41 -1.2 4,737,643 - Xcc-8004.4994.1 0.41 -0.3 4,737,643 - Xcc-8004.4994.1 0.41 +0.3 4,737,643 - Xcc-8004.4994.1 0.41 -1.7 4,737,643 - Xcc-8004.4994.1 0.41 +0.2 4,737,690 + Xcc-8004.4994.1 0.52 +0.2 4,737,690 + Xcc-8004.4994.1 0.52 -1.3 4,737,691 - Xcc-8004.4994.1 0.52 -1.6 4,737,691 - Xcc-8004.4994.1 0.52 -0.7 4,737,691 - Xcc-8004.4994.1 0.52 -0.0 4,737,691 - Xcc-8004.4994.1 0.52 -1.5 4,737,691 - Xcc-8004.4994.1 0.52 -0.1 4,737,691 - Xcc-8004.4994.1 0.52 -1.6 4,737,691 - Xcc-8004.4994.1 0.52 -0.4 4,737,968 + -2.1 4,737,968 + +0.2 4,737,969 - -0.5 4,737,969 - -1.9 4,737,969 - +0.7 4,737,969 - +0.4 4,738,031 + +0.5 4,738,031 + +0.0 4,738,031 + +1.3 4,738,031 + -0.2 4,738,031 + -1.1 4,738,031 + +0.7 4,738,032 - -0.4 4,738,032 - +1.2 4,738,032 - +0.4 4,738,032 - -0.6 4,738,032 - -1.6 4,738,032 - +1.1 4,738,220 + Xcc-8004.4996.1 0.55 -1.5 4,738,220 + Xcc-8004.4996.1 0.55 +0.0 4,738,220 + Xcc-8004.4996.1 0.55 -1.5 4,738,220 + Xcc-8004.4996.1 0.55 -0.3 4,738,220 + Xcc-8004.4996.1 0.55 +0.4 4,738,220 + Xcc-8004.4996.1 0.55 +1.4 4,738,220 + Xcc-8004.4996.1 0.55 -0.6 4,738,220 + Xcc-8004.4996.1 0.55 +0.6 4,738,220 + Xcc-8004.4996.1 0.55 -0.6 4,738,220 + Xcc-8004.4996.1 0.55 -0.1 4,738,220 + Xcc-8004.4996.1 0.55 -2.1 4,738,220 + Xcc-8004.4996.1 0.55 -0.6 4,738,220 + Xcc-8004.4996.1 0.55 +1.0 4,738,221 - Xcc-8004.4996.1 0.56 +0.4 4,738,221 - Xcc-8004.4996.1 0.56 +0.2 4,738,221 - Xcc-8004.4996.1 0.56 +0.2 4,738,221 - Xcc-8004.4996.1 0.56 -0.2 4,738,221 - Xcc-8004.4996.1 0.56 -0.4 4,738,221 - Xcc-8004.4996.1 0.56 +0.2 4,738,221 - Xcc-8004.4996.1 0.56 +0.7 4,738,221 - Xcc-8004.4996.1 0.56 -0.1 4,738,221 - Xcc-8004.4996.1 0.56 -1.6 4,738,221 - Xcc-8004.4996.1 0.56 +0.4
Or see this region's nucleotide sequence