Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4988.1 and Xcc-8004.4989.1 overlap by 4 nucleotides Xcc-8004.4989.1 and Xcc-8004.4992.1 are separated by 361 nucleotides Xcc-8004.4992.1 and Xcc-8004.4993.1 are separated by 290 nucleotides
Xcc-8004.4988.1: Xcc-8004.4988.1 - FIG01212472: hypothetical protein, at 4,733,653 to 4,734,570
Xcc-8004.4988.1
Xcc-8004.4989.1: Xcc-8004.4989.1 - FIG01212334: hypothetical protein, at 4,734,567 to 4,735,109
Xcc-8004.4989.1
Xcc-8004.4992.1: Xcc-8004.4992.1 - Thymidylate kinase (EC 2.7.4.9), at 4,735,471 to 4,736,127
Xcc-8004.4992.1
Xcc-8004.4993.1: Xcc-8004.4993.1 - hypothetical protein, at 4,736,418 to 4,737,371
Xcc-8004.4993.1
Position (kb) 4735
4736
4737 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4734.662 kb on + strand, within Xcc-8004.4989.1 at 4734.690 kb on + strand, within Xcc-8004.4989.1 at 4734.691 kb on - strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.705 kb on + strand, within Xcc-8004.4989.1 at 4734.706 kb on - strand, within Xcc-8004.4989.1 at 4734.706 kb on - strand, within Xcc-8004.4989.1 at 4734.706 kb on - strand, within Xcc-8004.4989.1 at 4734.726 kb on + strand, within Xcc-8004.4989.1 at 4734.726 kb on + strand, within Xcc-8004.4989.1 at 4734.726 kb on + strand, within Xcc-8004.4989.1 at 4734.726 kb on + strand, within Xcc-8004.4989.1 at 4734.727 kb on - strand, within Xcc-8004.4989.1 at 4734.727 kb on - strand, within Xcc-8004.4989.1 at 4734.727 kb on - strand, within Xcc-8004.4989.1 at 4734.727 kb on - strand, within Xcc-8004.4989.1 at 4734.768 kb on + strand, within Xcc-8004.4989.1 at 4734.768 kb on + strand, within Xcc-8004.4989.1 at 4734.769 kb on - strand, within Xcc-8004.4989.1 at 4734.789 kb on + strand, within Xcc-8004.4989.1 at 4734.789 kb on + strand, within Xcc-8004.4989.1 at 4734.790 kb on - strand, within Xcc-8004.4989.1 at 4734.790 kb on - strand, within Xcc-8004.4989.1 at 4734.911 kb on + strand, within Xcc-8004.4989.1 at 4734.911 kb on + strand, within Xcc-8004.4989.1 at 4734.911 kb on + strand, within Xcc-8004.4989.1 at 4734.912 kb on - strand, within Xcc-8004.4989.1 at 4734.912 kb on - strand, within Xcc-8004.4989.1 at 4734.912 kb on - strand, within Xcc-8004.4989.1 at 4735.083 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.089 kb on + strand at 4735.090 kb on - strand at 4735.090 kb on - strand at 4735.090 kb on - strand at 4735.090 kb on - strand at 4735.210 kb on + strand at 4735.210 kb on + strand at 4735.210 kb on + strand at 4735.210 kb on + strand at 4735.210 kb on + strand at 4735.211 kb on - strand at 4735.211 kb on - strand at 4735.248 kb on + strand at 4735.249 kb on - strand at 4735.249 kb on - strand at 4735.249 kb on - strand at 4735.267 kb on + strand at 4735.267 kb on + strand at 4735.268 kb on - strand at 4735.268 kb on - strand at 4735.268 kb on - strand at 4735.300 kb on + strand at 4735.301 kb on - strand at 4735.301 kb on - strand at 4735.346 kb on + strand at 4735.346 kb on + strand at 4735.346 kb on + strand at 4735.346 kb on + strand at 4735.346 kb on + strand at 4735.346 kb on + strand at 4735.347 kb on - strand at 4735.347 kb on - strand at 4735.347 kb on - strand at 4735.347 kb on - strand at 4735.347 kb on - strand at 4735.347 kb on - strand at 4735.432 kb on + strand at 4735.432 kb on + strand at 4735.437 kb on + strand at 4735.437 kb on + strand at 4735.449 kb on + strand at 4736.105 kb on + strand at 4736.139 kb on + strand at 4736.139 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.195 kb on + strand at 4736.196 kb on - strand at 4736.196 kb on - strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.199 kb on + strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.200 kb on - strand at 4736.306 kb on - strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.312 kb on + strand at 4736.313 kb on - strand at 4736.313 kb on - strand at 4736.313 kb on - strand at 4736.675 kb on - strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.055 kb on + strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1 at 4737.056 kb on - strand, within Xcc-8004.4993.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,734,662 + Xcc-8004.4989.1 0.17 +0.4 4,734,690 + Xcc-8004.4989.1 0.23 +0.0 4,734,691 - Xcc-8004.4989.1 0.23 -1.1 4,734,705 + Xcc-8004.4989.1 0.25 +0.3 4,734,705 + Xcc-8004.4989.1 0.25 -0.0 4,734,705 + Xcc-8004.4989.1 0.25 -2.0 4,734,705 + Xcc-8004.4989.1 0.25 -0.4 4,734,705 + Xcc-8004.4989.1 0.25 -0.7 4,734,705 + Xcc-8004.4989.1 0.25 +0.2 4,734,705 + Xcc-8004.4989.1 0.25 -1.3 4,734,705 + Xcc-8004.4989.1 0.25 +1.4 4,734,705 + Xcc-8004.4989.1 0.25 +0.7 4,734,705 + Xcc-8004.4989.1 0.25 +0.5 4,734,706 - Xcc-8004.4989.1 0.26 -0.8 4,734,706 - Xcc-8004.4989.1 0.26 -1.7 4,734,706 - Xcc-8004.4989.1 0.26 -0.7 4,734,726 + Xcc-8004.4989.1 0.29 -0.4 4,734,726 + Xcc-8004.4989.1 0.29 -0.1 4,734,726 + Xcc-8004.4989.1 0.29 -0.5 4,734,726 + Xcc-8004.4989.1 0.29 -0.8 4,734,727 - Xcc-8004.4989.1 0.29 +0.2 4,734,727 - Xcc-8004.4989.1 0.29 -0.6 4,734,727 - Xcc-8004.4989.1 0.29 -0.9 4,734,727 - Xcc-8004.4989.1 0.29 -0.5 4,734,768 + Xcc-8004.4989.1 0.37 +0.0 4,734,768 + Xcc-8004.4989.1 0.37 -0.5 4,734,769 - Xcc-8004.4989.1 0.37 -1.0 4,734,789 + Xcc-8004.4989.1 0.41 -0.1 4,734,789 + Xcc-8004.4989.1 0.41 +2.0 4,734,790 - Xcc-8004.4989.1 0.41 +0.0 4,734,790 - Xcc-8004.4989.1 0.41 -2.0 4,734,911 + Xcc-8004.4989.1 0.63 -1.7 4,734,911 + Xcc-8004.4989.1 0.63 -1.0 4,734,911 + Xcc-8004.4989.1 0.63 +1.3 4,734,912 - Xcc-8004.4989.1 0.64 -0.1 4,734,912 - Xcc-8004.4989.1 0.64 +0.4 4,734,912 - Xcc-8004.4989.1 0.64 +0.6 4,735,083 + +1.8 4,735,089 + -0.8 4,735,089 + -0.8 4,735,089 + -0.7 4,735,089 + -0.4 4,735,089 + +0.3 4,735,089 + +0.5 4,735,089 + +0.2 4,735,090 - +0.3 4,735,090 - +0.5 4,735,090 - -2.9 4,735,090 - +0.0 4,735,210 + +0.4 4,735,210 + -0.1 4,735,210 + -0.5 4,735,210 + +0.9 4,735,210 + -0.2 4,735,211 - -0.3 4,735,211 - -0.7 4,735,248 + -0.3 4,735,249 - +0.5 4,735,249 - -1.7 4,735,249 - -0.4 4,735,267 + +0.2 4,735,267 + -0.7 4,735,268 - -1.5 4,735,268 - -0.5 4,735,268 - +0.9 4,735,300 + +0.4 4,735,301 - +0.4 4,735,301 - +0.7 4,735,346 + +0.3 4,735,346 + +0.8 4,735,346 + -0.6 4,735,346 + +1.4 4,735,346 + +0.8 4,735,346 + -0.0 4,735,347 - -2.3 4,735,347 - -1.1 4,735,347 - +1.3 4,735,347 - +0.5 4,735,347 - -0.1 4,735,347 - +0.1 4,735,432 + -2.0 4,735,432 + +0.4 4,735,437 + -0.3 4,735,437 + -0.9 4,735,449 + +0.9 4,736,105 + +1.3 4,736,139 + -0.0 4,736,139 + +0.5 4,736,195 + +0.7 4,736,195 + -0.1 4,736,195 + +0.7 4,736,195 + -0.6 4,736,195 + +0.6 4,736,196 - +1.4 4,736,196 - -1.3 4,736,199 + +1.0 4,736,199 + -0.9 4,736,199 + -0.2 4,736,199 + -0.6 4,736,199 + +0.6 4,736,199 + -0.7 4,736,199 + -0.3 4,736,199 + -0.1 4,736,199 + +0.8 4,736,199 + -0.2 4,736,199 + -0.0 4,736,199 + -1.2 4,736,200 - -0.4 4,736,200 - +1.1 4,736,200 - +0.6 4,736,200 - +0.1 4,736,200 - -0.1 4,736,200 - +1.5 4,736,306 - +0.4 4,736,312 + +1.9 4,736,312 + +0.3 4,736,312 + -0.3 4,736,312 + +0.0 4,736,312 + -0.5 4,736,312 + -2.1 4,736,313 - +0.2 4,736,313 - -0.1 4,736,313 - +2.6 4,736,675 - Xcc-8004.4993.1 0.27 +0.2 4,737,055 + Xcc-8004.4993.1 0.67 +1.4 4,737,055 + Xcc-8004.4993.1 0.67 -0.6 4,737,055 + Xcc-8004.4993.1 0.67 +0.1 4,737,055 + Xcc-8004.4993.1 0.67 +0.3 4,737,055 + Xcc-8004.4993.1 0.67 +1.7 4,737,055 + Xcc-8004.4993.1 0.67 -1.5 4,737,055 + Xcc-8004.4993.1 0.67 -0.1 4,737,055 + Xcc-8004.4993.1 0.67 +0.2 4,737,056 - Xcc-8004.4993.1 0.67 -0.7 4,737,056 - Xcc-8004.4993.1 0.67 -1.6 4,737,056 - Xcc-8004.4993.1 0.67 -0.0 4,737,056 - Xcc-8004.4993.1 0.67 -0.2 4,737,056 - Xcc-8004.4993.1 0.67 -1.2 4,737,056 - Xcc-8004.4993.1 0.67 -1.0 4,737,056 - Xcc-8004.4993.1 0.67 +1.1
Or see this region's nucleotide sequence