Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4988.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4986.1 and Xcc-8004.4987.1 are separated by 82 nucleotidesXcc-8004.4987.1 and Xcc-8004.4988.1 are separated by 102 nucleotidesXcc-8004.4988.1 and Xcc-8004.4989.1 overlap by 4 nucleotidesXcc-8004.4989.1 and Xcc-8004.4992.1 are separated by 361 nucleotides Xcc-8004.4986.1: Xcc-8004.4986.1 - FIG01209754: hypothetical protein, at 4,732,647 to 4,733,108 Xcc-8004.4986.1 Xcc-8004.4987.1: Xcc-8004.4987.1 - FIG01212434: hypothetical protein, at 4,733,191 to 4,733,550 Xcc-8004.4987.1 Xcc-8004.4988.1: Xcc-8004.4988.1 - FIG01212472: hypothetical protein, at 4,733,653 to 4,734,570 Xcc-8004.4988.1 Xcc-8004.4989.1: Xcc-8004.4989.1 - FIG01212334: hypothetical protein, at 4,734,567 to 4,735,109 Xcc-8004.4989.1 Xcc-8004.4992.1: Xcc-8004.4992.1 - Thymidylate kinase (EC 2.7.4.9), at 4,735,471 to 4,736,127 Xcc-8004.4992.1 Position (kb) 4733 4734 4735Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4732.716 kb on + strand, within Xcc-8004.4986.1at 4732.716 kb on + strand, within Xcc-8004.4986.1at 4732.926 kb on + strand, within Xcc-8004.4986.1at 4732.926 kb on + strand, within Xcc-8004.4986.1at 4732.927 kb on - strand, within Xcc-8004.4986.1at 4732.927 kb on - strand, within Xcc-8004.4986.1at 4733.180 kb on - strandat 4733.180 kb on - strandat 4733.336 kb on + strand, within Xcc-8004.4987.1at 4733.337 kb on - strand, within Xcc-8004.4987.1at 4733.337 kb on - strand, within Xcc-8004.4987.1at 4733.337 kb on - strand, within Xcc-8004.4987.1at 4733.337 kb on - strand, within Xcc-8004.4987.1at 4733.337 kb on - strand, within Xcc-8004.4987.1at 4733.337 kb on - strand, within Xcc-8004.4987.1at 4733.419 kb on + strand, within Xcc-8004.4987.1at 4733.420 kb on - strand, within Xcc-8004.4987.1at 4733.420 kb on - strand, within Xcc-8004.4987.1at 4733.464 kb on + strand, within Xcc-8004.4987.1at 4733.464 kb on + strand, within Xcc-8004.4987.1at 4733.464 kb on + strand, within Xcc-8004.4987.1at 4733.464 kb on + strand, within Xcc-8004.4987.1at 4733.464 kb on + strand, within Xcc-8004.4987.1at 4733.465 kb on - strand, within Xcc-8004.4987.1at 4733.465 kb on - strand, within Xcc-8004.4987.1at 4733.465 kb on - strand, within Xcc-8004.4987.1at 4733.465 kb on - strand, within Xcc-8004.4987.1at 4733.465 kb on - strand, within Xcc-8004.4987.1at 4733.563 kb on + strandat 4733.564 kb on - strandat 4733.590 kb on + strandat 4733.590 kb on + strandat 4733.590 kb on + strandat 4733.590 kb on + strandat 4733.590 kb on + strandat 4733.590 kb on + strandat 4733.591 kb on - strandat 4733.948 kb on + strand, within Xcc-8004.4988.1at 4733.948 kb on + strand, within Xcc-8004.4988.1at 4733.948 kb on + strand, within Xcc-8004.4988.1at 4733.948 kb on + strand, within Xcc-8004.4988.1at 4733.948 kb on + strand, within Xcc-8004.4988.1at 4733.948 kb on + strand, within Xcc-8004.4988.1at 4733.948 kb on + strand, within Xcc-8004.4988.1at 4733.948 kb on + strand, within Xcc-8004.4988.1at 4733.948 kb on + strand, within Xcc-8004.4988.1at 4733.949 kb on - strand, within Xcc-8004.4988.1at 4733.949 kb on - strand, within Xcc-8004.4988.1at 4733.949 kb on - strand, within Xcc-8004.4988.1at 4733.949 kb on - strand, within Xcc-8004.4988.1at 4733.949 kb on - strand, within Xcc-8004.4988.1at 4733.949 kb on - strand, within Xcc-8004.4988.1at 4733.949 kb on - strand, within Xcc-8004.4988.1at 4733.949 kb on - strand, within Xcc-8004.4988.1at 4734.174 kb on + strand, within Xcc-8004.4988.1at 4734.217 kb on + strand, within Xcc-8004.4988.1at 4734.217 kb on + strand, within Xcc-8004.4988.1at 4734.217 kb on + strand, within Xcc-8004.4988.1at 4734.218 kb on - strand, within Xcc-8004.4988.1at 4734.218 kb on - strand, within Xcc-8004.4988.1at 4734.218 kb on - strand, within Xcc-8004.4988.1at 4734.313 kb on - strand, within Xcc-8004.4988.1at 4734.662 kb on + strand, within Xcc-8004.4989.1at 4734.690 kb on + strand, within Xcc-8004.4989.1at 4734.691 kb on - strand, within Xcc-8004.4989.1at 4734.705 kb on + strand, within Xcc-8004.4989.1at 4734.705 kb on + strand, within Xcc-8004.4989.1at 4734.705 kb on + strand, within Xcc-8004.4989.1at 4734.705 kb on + strand, within Xcc-8004.4989.1at 4734.705 kb on + strand, within Xcc-8004.4989.1at 4734.705 kb on + strand, within Xcc-8004.4989.1at 4734.705 kb on + strand, within Xcc-8004.4989.1at 4734.705 kb on + strand, within Xcc-8004.4989.1at 4734.705 kb on + strand, within Xcc-8004.4989.1at 4734.705 kb on + strand, within Xcc-8004.4989.1at 4734.706 kb on - strand, within Xcc-8004.4989.1at 4734.706 kb on - strand, within Xcc-8004.4989.1at 4734.706 kb on - strand, within Xcc-8004.4989.1at 4734.726 kb on + strand, within Xcc-8004.4989.1at 4734.726 kb on + strand, within Xcc-8004.4989.1at 4734.726 kb on + strand, within Xcc-8004.4989.1at 4734.726 kb on + strand, within Xcc-8004.4989.1at 4734.727 kb on - strand, within Xcc-8004.4989.1at 4734.727 kb on - strand, within Xcc-8004.4989.1at 4734.727 kb on - strand, within Xcc-8004.4989.1at 4734.727 kb on - strand, within Xcc-8004.4989.1at 4734.768 kb on + strand, within Xcc-8004.4989.1at 4734.768 kb on + strand, within Xcc-8004.4989.1at 4734.769 kb on - strand, within Xcc-8004.4989.1at 4734.789 kb on + strand, within Xcc-8004.4989.1at 4734.789 kb on + strand, within Xcc-8004.4989.1at 4734.790 kb on - strand, within Xcc-8004.4989.1at 4734.790 kb on - strand, within Xcc-8004.4989.1at 4734.911 kb on + strand, within Xcc-8004.4989.1at 4734.911 kb on + strand, within Xcc-8004.4989.1at 4734.911 kb on + strand, within Xcc-8004.4989.1at 4734.912 kb on - strand, within Xcc-8004.4989.1at 4734.912 kb on - strand, within Xcc-8004.4989.1at 4734.912 kb on - strand, within Xcc-8004.4989.1at 4735.083 kb on + strandat 4735.089 kb on + strandat 4735.089 kb on + strandat 4735.089 kb on + strandat 4735.089 kb on + strandat 4735.089 kb on + strandat 4735.089 kb on + strandat 4735.089 kb on + strandat 4735.090 kb on - strandat 4735.090 kb on - strandat 4735.090 kb on - strandat 4735.090 kb on - strandat 4735.210 kb on + strandat 4735.210 kb on + strandat 4735.210 kb on + strandat 4735.210 kb on + strandat 4735.210 kb on + strandat 4735.211 kb on - strandat 4735.211 kb on - strandat 4735.248 kb on + strandat 4735.249 kb on - strandat 4735.249 kb on - strandat 4735.249 kb on - strandat 4735.267 kb on + strandat 4735.267 kb on + strandat 4735.268 kb on - strandat 4735.268 kb on - strandat 4735.268 kb on - strandat 4735.300 kb on + strandat 4735.301 kb on - strandat 4735.301 kb on - strandat 4735.346 kb on + strandat 4735.346 kb on + strandat 4735.346 kb on + strandat 4735.346 kb on + strandat 4735.346 kb on + strandat 4735.346 kb on + strandat 4735.347 kb on - strandat 4735.347 kb on - strandat 4735.347 kb on - strandat 4735.347 kb on - strandat 4735.347 kb on - strandat 4735.347 kb on - strandat 4735.432 kb on + strandat 4735.432 kb on + strandat 4735.437 kb on + strandat 4735.437 kb on + strandat 4735.449 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,732,716 + Xcc-8004.4986.1 0.15 -1.3
4,732,716 + Xcc-8004.4986.1 0.15 +1.7
4,732,926 + Xcc-8004.4986.1 0.60 -1.0
4,732,926 + Xcc-8004.4986.1 0.60 -1.1
4,732,927 - Xcc-8004.4986.1 0.61 +0.8
4,732,927 - Xcc-8004.4986.1 0.61 +0.9
4,733,180 - +0.1
4,733,180 - +0.2
4,733,336 + Xcc-8004.4987.1 0.40 +0.2
4,733,337 - Xcc-8004.4987.1 0.41 -0.9
4,733,337 - Xcc-8004.4987.1 0.41 -0.6
4,733,337 - Xcc-8004.4987.1 0.41 -0.0
4,733,337 - Xcc-8004.4987.1 0.41 +0.8
4,733,337 - Xcc-8004.4987.1 0.41 +0.2
4,733,337 - Xcc-8004.4987.1 0.41 +0.0
4,733,419 + Xcc-8004.4987.1 0.63 +0.4
4,733,420 - Xcc-8004.4987.1 0.64 +0.2
4,733,420 - Xcc-8004.4987.1 0.64 +0.7
4,733,464 + Xcc-8004.4987.1 0.76 -1.3
4,733,464 + Xcc-8004.4987.1 0.76 -0.2
4,733,464 + Xcc-8004.4987.1 0.76 -0.6
4,733,464 + Xcc-8004.4987.1 0.76 +1.8
4,733,464 + Xcc-8004.4987.1 0.76 +0.4
4,733,465 - Xcc-8004.4987.1 0.76 +0.5
4,733,465 - Xcc-8004.4987.1 0.76 -0.2
4,733,465 - Xcc-8004.4987.1 0.76 +0.7
4,733,465 - Xcc-8004.4987.1 0.76 -0.1
4,733,465 - Xcc-8004.4987.1 0.76 -0.6
4,733,563 + +0.4
4,733,564 - +0.2
4,733,590 + -0.7
4,733,590 + +0.6
4,733,590 + +0.1
4,733,590 + +0.1
4,733,590 + +0.4
4,733,590 + +0.6
4,733,591 - -0.4
4,733,948 + Xcc-8004.4988.1 0.32 -0.2
4,733,948 + Xcc-8004.4988.1 0.32 -1.9
4,733,948 + Xcc-8004.4988.1 0.32 -1.4
4,733,948 + Xcc-8004.4988.1 0.32 +0.6
4,733,948 + Xcc-8004.4988.1 0.32 +0.1
4,733,948 + Xcc-8004.4988.1 0.32 +0.8
4,733,948 + Xcc-8004.4988.1 0.32 +0.8
4,733,948 + Xcc-8004.4988.1 0.32 +0.3
4,733,948 + Xcc-8004.4988.1 0.32 -0.4
4,733,949 - Xcc-8004.4988.1 0.32 +0.3
4,733,949 - Xcc-8004.4988.1 0.32 +0.5
4,733,949 - Xcc-8004.4988.1 0.32 +0.8
4,733,949 - Xcc-8004.4988.1 0.32 +0.7
4,733,949 - Xcc-8004.4988.1 0.32 +0.0
4,733,949 - Xcc-8004.4988.1 0.32 -0.4
4,733,949 - Xcc-8004.4988.1 0.32 +1.0
4,733,949 - Xcc-8004.4988.1 0.32 +1.7
4,734,174 + Xcc-8004.4988.1 0.57 -0.2
4,734,217 + Xcc-8004.4988.1 0.61 +1.3
4,734,217 + Xcc-8004.4988.1 0.61 -0.4
4,734,217 + Xcc-8004.4988.1 0.61 -0.6
4,734,218 - Xcc-8004.4988.1 0.62 +1.4
4,734,218 - Xcc-8004.4988.1 0.62 -0.9
4,734,218 - Xcc-8004.4988.1 0.62 -0.8
4,734,313 - Xcc-8004.4988.1 0.72 +1.0
4,734,662 + Xcc-8004.4989.1 0.17 +0.4
4,734,690 + Xcc-8004.4989.1 0.23 +0.0
4,734,691 - Xcc-8004.4989.1 0.23 -1.1
4,734,705 + Xcc-8004.4989.1 0.25 +0.3
4,734,705 + Xcc-8004.4989.1 0.25 -0.0
4,734,705 + Xcc-8004.4989.1 0.25 -2.0
4,734,705 + Xcc-8004.4989.1 0.25 -0.4
4,734,705 + Xcc-8004.4989.1 0.25 -0.7
4,734,705 + Xcc-8004.4989.1 0.25 +0.2
4,734,705 + Xcc-8004.4989.1 0.25 -1.3
4,734,705 + Xcc-8004.4989.1 0.25 +1.4
4,734,705 + Xcc-8004.4989.1 0.25 +0.7
4,734,705 + Xcc-8004.4989.1 0.25 +0.5
4,734,706 - Xcc-8004.4989.1 0.26 -0.8
4,734,706 - Xcc-8004.4989.1 0.26 -1.7
4,734,706 - Xcc-8004.4989.1 0.26 -0.7
4,734,726 + Xcc-8004.4989.1 0.29 -0.4
4,734,726 + Xcc-8004.4989.1 0.29 -0.1
4,734,726 + Xcc-8004.4989.1 0.29 -0.5
4,734,726 + Xcc-8004.4989.1 0.29 -0.8
4,734,727 - Xcc-8004.4989.1 0.29 +0.2
4,734,727 - Xcc-8004.4989.1 0.29 -0.6
4,734,727 - Xcc-8004.4989.1 0.29 -0.9
4,734,727 - Xcc-8004.4989.1 0.29 -0.5
4,734,768 + Xcc-8004.4989.1 0.37 +0.0
4,734,768 + Xcc-8004.4989.1 0.37 -0.5
4,734,769 - Xcc-8004.4989.1 0.37 -1.0
4,734,789 + Xcc-8004.4989.1 0.41 -0.1
4,734,789 + Xcc-8004.4989.1 0.41 +2.0
4,734,790 - Xcc-8004.4989.1 0.41 +0.0
4,734,790 - Xcc-8004.4989.1 0.41 -2.0
4,734,911 + Xcc-8004.4989.1 0.63 -1.7
4,734,911 + Xcc-8004.4989.1 0.63 -1.0
4,734,911 + Xcc-8004.4989.1 0.63 +1.3
4,734,912 - Xcc-8004.4989.1 0.64 -0.1
4,734,912 - Xcc-8004.4989.1 0.64 +0.4
4,734,912 - Xcc-8004.4989.1 0.64 +0.6
4,735,083 + +1.8
4,735,089 + -0.8
4,735,089 + -0.8
4,735,089 + -0.7
4,735,089 + -0.4
4,735,089 + +0.3
4,735,089 + +0.5
4,735,089 + +0.2
4,735,090 - +0.3
4,735,090 - +0.5
4,735,090 - -2.9
4,735,090 - +0.0
4,735,210 + +0.4
4,735,210 + -0.1
4,735,210 + -0.5
4,735,210 + +0.9
4,735,210 + -0.2
4,735,211 - -0.3
4,735,211 - -0.7
4,735,248 + -0.3
4,735,249 - +0.5
4,735,249 - -1.7
4,735,249 - -0.4
4,735,267 + +0.2
4,735,267 + -0.7
4,735,268 - -1.5
4,735,268 - -0.5
4,735,268 - +0.9
4,735,300 + +0.4
4,735,301 - +0.4
4,735,301 - +0.7
4,735,346 + +0.3
4,735,346 + +0.8
4,735,346 + -0.6
4,735,346 + +1.4
4,735,346 + +0.8
4,735,346 + -0.0
4,735,347 - -2.3
4,735,347 - -1.1
4,735,347 - +1.3
4,735,347 - +0.5
4,735,347 - -0.1
4,735,347 - +0.1
4,735,432 + -2.0
4,735,432 + +0.4
4,735,437 + -0.3
4,735,437 + -0.9
4,735,449 + +0.9

Or see this region's nucleotide sequence