Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4929.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,685,564	+				-0.9
4,685,564	+				-0.4
4,685,564	+				-1.8
4,685,565	-				-0.3
4,685,922	+				-0.8
4,685,922	+				+0.9
4,685,922	+				-0.0
4,685,922	+				-0.1
4,685,923	-				-1.1
4,685,923	-				+0.0
4,685,923	-				+0.5
4,685,923	-				+1.4
4,685,923	-				-0.7
4,685,923	-				+0.8
4,685,923	-				+1.8
4,685,923	-				+0.3
4,685,934	-				-1.3
4,685,934	-				-0.4
4,685,943	-				-0.1
4,685,995	-				+0.5
4,686,027	+				+0.8
4,686,027	+				-2.2
4,686,027	+				+0.7
4,686,027	+				+0.3
4,686,027	+				+1.1
4,686,027	+				+1.2
4,686,028	-				-0.3
4,686,028	-				-0.4
4,686,028	-				-0.3
4,686,028	-				-1.3
4,686,028	-				+0.5
4,686,028	-				+0.2
4,686,029	+				-1.2
4,686,030	-				-1.2
4,686,076	+				-0.9
4,686,133	+				+1.1
4,686,134	-				+0.3
4,686,262	+				+0.8
4,686,262	+				-0.6
4,686,262	+				-0.2
4,686,263	-				-0.2
4,686,607	+				-1.4
4,686,840	-		Xcc-8004.4929.1	0.25	-0.8
4,686,840	-		Xcc-8004.4929.1	0.25	+1.6
4,686,865	+		Xcc-8004.4929.1	0.28	+0.8
4,687,271	-		Xcc-8004.4929.1	0.64	-0.5
4,687,362	+		Xcc-8004.4929.1	0.72	-0.5
4,687,362	+		Xcc-8004.4929.1	0.72	+0.1
4,687,363	-		Xcc-8004.4929.1	0.72	+0.5
4,687,363	-		Xcc-8004.4929.1	0.72	-1.2
4,687,363	-		Xcc-8004.4929.1	0.72	-1.4
4,687,750	+				+0.5
4,687,750	+				-0.3
4,687,857	-		Xcc-8004.4930.1	0.10	+0.6
4,688,103	+		Xcc-8004.4930.1	0.30	+1.3
4,688,194	-		Xcc-8004.4930.1	0.38	+1.3
4,688,329	+		Xcc-8004.4930.1	0.49	+0.2
4,688,329	+		Xcc-8004.4930.1	0.49	-0.1
4,688,329	+		Xcc-8004.4930.1	0.49	-1.0
4,688,330	-		Xcc-8004.4930.1	0.49	+0.3
4,688,330	-		Xcc-8004.4930.1	0.49	+0.2
4,688,330	-		Xcc-8004.4930.1	0.49	+1.9
4,688,330	-		Xcc-8004.4930.1	0.49	+0.1
4,688,330	-		Xcc-8004.4930.1	0.49	+0.7
4,688,330	-		Xcc-8004.4930.1	0.49	+0.0
4,688,437	+		Xcc-8004.4930.1	0.57	+0.0
4,688,438	-		Xcc-8004.4930.1	0.58	-0.6
4,688,438	-		Xcc-8004.4930.1	0.58	+0.8
4,688,438	-		Xcc-8004.4930.1	0.58	+0.7
4,688,438	-		Xcc-8004.4930.1	0.58	-0.6
4,688,438	-		Xcc-8004.4930.1	0.58	-0.0
4,688,438	-		Xcc-8004.4930.1	0.58	+0.4
4,688,467	+		Xcc-8004.4930.1	0.60	-2.0
4,688,468	-		Xcc-8004.4930.1	0.60	-0.7
4,688,575	+		Xcc-8004.4930.1	0.69	-0.4
4,688,575	+		Xcc-8004.4930.1	0.69	+0.2
4,688,575	+		Xcc-8004.4930.1	0.69	+0.6
4,688,575	+		Xcc-8004.4930.1	0.69	-0.7
4,688,575	+		Xcc-8004.4930.1	0.69	+0.2
4,688,575	+		Xcc-8004.4930.1	0.69	-0.1
4,688,576	-		Xcc-8004.4930.1	0.69	-1.5
4,688,576	-		Xcc-8004.4930.1	0.69	+0.0
4,688,576	-		Xcc-8004.4930.1	0.69	+0.9
4,688,576	-		Xcc-8004.4930.1	0.69	+0.2