Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4904.1 and Xcc-8004.4905.1 are separated by 57 nucleotides Xcc-8004.4905.1 and Xcc-8004.4906.1 are separated by 269 nucleotides Xcc-8004.4906.1 and Xcc-8004.4907.1 overlap by 8 nucleotides
Xcc-8004.4904.1: Xcc-8004.4904.1 - O-antigen acetylase, at 4,662,117 to 4,663,241
Xcc-8004.4904.1
Xcc-8004.4905.1: Xcc-8004.4905.1 - FIG01211209: hypothetical protein, at 4,663,299 to 4,663,649
Xcc-8004.4905.1
Xcc-8004.4906.1: Xcc-8004.4906.1 - Glucosyltransferase, at 4,663,919 to 4,665,253
Xcc-8004.4906.1
Xcc-8004.4907.1: Xcc-8004.4907.1 - Enterobactin synthetase component F (EC 2.7.7.-), at 4,665,246 to 4,669,226
Xcc-8004.4907.1
Position (kb) 4663
4664
4665
4666 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4662.967 kb on + strand, within Xcc-8004.4904.1 at 4662.967 kb on + strand, within Xcc-8004.4904.1 at 4663.021 kb on + strand, within Xcc-8004.4904.1 at 4663.021 kb on + strand, within Xcc-8004.4904.1 at 4663.021 kb on + strand, within Xcc-8004.4904.1 at 4663.022 kb on - strand, within Xcc-8004.4904.1 at 4663.022 kb on - strand, within Xcc-8004.4904.1 at 4663.022 kb on - strand, within Xcc-8004.4904.1 at 4663.315 kb on + strand at 4663.315 kb on + strand at 4663.315 kb on + strand at 4663.316 kb on - strand at 4663.316 kb on - strand at 4663.316 kb on - strand at 4663.316 kb on - strand at 4663.316 kb on - strand at 4663.344 kb on - strand, within Xcc-8004.4905.1 at 4663.618 kb on - strand at 4663.618 kb on - strand at 4663.701 kb on + strand at 4663.701 kb on + strand at 4663.701 kb on + strand at 4663.721 kb on + strand at 4663.721 kb on + strand at 4663.745 kb on + strand at 4663.746 kb on - strand at 4663.746 kb on - strand at 4663.805 kb on + strand at 4663.806 kb on - strand at 4663.807 kb on + strand at 4663.807 kb on + strand at 4663.808 kb on - strand at 4663.808 kb on - strand at 4664.125 kb on + strand, within Xcc-8004.4906.1 at 4664.449 kb on + strand, within Xcc-8004.4906.1 at 4664.475 kb on + strand, within Xcc-8004.4906.1 at 4664.475 kb on + strand, within Xcc-8004.4906.1 at 4664.475 kb on + strand, within Xcc-8004.4906.1 at 4664.476 kb on - strand, within Xcc-8004.4906.1 at 4664.476 kb on - strand, within Xcc-8004.4906.1 at 4664.476 kb on - strand, within Xcc-8004.4906.1 at 4664.476 kb on - strand, within Xcc-8004.4906.1 at 4664.613 kb on + strand, within Xcc-8004.4906.1 at 4664.614 kb on - strand, within Xcc-8004.4906.1 at 4664.619 kb on + strand, within Xcc-8004.4906.1 at 4664.620 kb on - strand, within Xcc-8004.4906.1 at 4664.620 kb on - strand, within Xcc-8004.4906.1 at 4664.620 kb on - strand, within Xcc-8004.4906.1 at 4664.620 kb on - strand, within Xcc-8004.4906.1 at 4664.620 kb on - strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.621 kb on + strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.622 kb on - strand, within Xcc-8004.4906.1 at 4664.872 kb on + strand, within Xcc-8004.4906.1 at 4664.872 kb on + strand, within Xcc-8004.4906.1 at 4665.132 kb on - strand at 4665.132 kb on - strand at 4665.253 kb on + strand at 4665.381 kb on - strand at 4665.412 kb on + strand at 4665.412 kb on + strand at 4665.412 kb on + strand at 4665.413 kb on - strand at 4665.413 kb on - strand at 4665.413 kb on - strand at 4665.413 kb on - strand at 4665.527 kb on - strand at 4665.992 kb on - strand, within Xcc-8004.4907.1 at 4666.033 kb on + strand, within Xcc-8004.4907.1 at 4666.033 kb on + strand, within Xcc-8004.4907.1 at 4666.033 kb on + strand, within Xcc-8004.4907.1 at 4666.034 kb on - strand, within Xcc-8004.4907.1 at 4666.080 kb on - strand, within Xcc-8004.4907.1 at 4666.143 kb on - strand, within Xcc-8004.4907.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,662,967 + Xcc-8004.4904.1 0.76 -0.1 4,662,967 + Xcc-8004.4904.1 0.76 -1.9 4,663,021 + Xcc-8004.4904.1 0.80 -0.6 4,663,021 + Xcc-8004.4904.1 0.80 -0.0 4,663,021 + Xcc-8004.4904.1 0.80 +1.9 4,663,022 - Xcc-8004.4904.1 0.80 +0.7 4,663,022 - Xcc-8004.4904.1 0.80 -0.6 4,663,022 - Xcc-8004.4904.1 0.80 -0.8 4,663,315 + -1.1 4,663,315 + -0.2 4,663,315 + -2.2 4,663,316 - -0.6 4,663,316 - -1.1 4,663,316 - -1.8 4,663,316 - -1.3 4,663,316 - -0.3 4,663,344 - Xcc-8004.4905.1 0.13 -1.1 4,663,618 - +0.9 4,663,618 - -0.2 4,663,701 + +1.2 4,663,701 + -0.6 4,663,701 + -0.8 4,663,721 + -0.1 4,663,721 + +1.3 4,663,745 + -0.1 4,663,746 - +0.3 4,663,746 - -0.6 4,663,805 + +0.8 4,663,806 - +0.9 4,663,807 + -0.3 4,663,807 + +0.2 4,663,808 - -0.2 4,663,808 - -0.7 4,664,125 + Xcc-8004.4906.1 0.15 -0.7 4,664,449 + Xcc-8004.4906.1 0.40 -0.4 4,664,475 + Xcc-8004.4906.1 0.42 -0.8 4,664,475 + Xcc-8004.4906.1 0.42 -0.5 4,664,475 + Xcc-8004.4906.1 0.42 -1.3 4,664,476 - Xcc-8004.4906.1 0.42 +0.2 4,664,476 - Xcc-8004.4906.1 0.42 -1.0 4,664,476 - Xcc-8004.4906.1 0.42 +0.7 4,664,476 - Xcc-8004.4906.1 0.42 +0.4 4,664,613 + Xcc-8004.4906.1 0.52 -0.8 4,664,614 - Xcc-8004.4906.1 0.52 +0.8 4,664,619 + Xcc-8004.4906.1 0.52 +0.1 4,664,620 - Xcc-8004.4906.1 0.53 +0.5 4,664,620 - Xcc-8004.4906.1 0.53 -0.6 4,664,620 - Xcc-8004.4906.1 0.53 -1.1 4,664,620 - Xcc-8004.4906.1 0.53 +0.0 4,664,620 - Xcc-8004.4906.1 0.53 -1.9 4,664,621 + Xcc-8004.4906.1 0.53 -0.0 4,664,621 + Xcc-8004.4906.1 0.53 -0.3 4,664,621 + Xcc-8004.4906.1 0.53 -0.2 4,664,621 + Xcc-8004.4906.1 0.53 -0.8 4,664,621 + Xcc-8004.4906.1 0.53 -1.6 4,664,621 + Xcc-8004.4906.1 0.53 -0.5 4,664,621 + Xcc-8004.4906.1 0.53 +1.0 4,664,621 + Xcc-8004.4906.1 0.53 -0.7 4,664,621 + Xcc-8004.4906.1 0.53 -0.5 4,664,621 + Xcc-8004.4906.1 0.53 -0.6 4,664,621 + Xcc-8004.4906.1 0.53 -0.4 4,664,621 + Xcc-8004.4906.1 0.53 -0.6 4,664,621 + Xcc-8004.4906.1 0.53 -0.6 4,664,621 + Xcc-8004.4906.1 0.53 +0.5 4,664,622 - Xcc-8004.4906.1 0.53 -1.0 4,664,622 - Xcc-8004.4906.1 0.53 -1.2 4,664,622 - Xcc-8004.4906.1 0.53 +0.8 4,664,622 - Xcc-8004.4906.1 0.53 -0.2 4,664,622 - Xcc-8004.4906.1 0.53 +0.4 4,664,622 - Xcc-8004.4906.1 0.53 +0.2 4,664,622 - Xcc-8004.4906.1 0.53 -1.9 4,664,622 - Xcc-8004.4906.1 0.53 -0.1 4,664,622 - Xcc-8004.4906.1 0.53 +0.1 4,664,622 - Xcc-8004.4906.1 0.53 -1.3 4,664,622 - Xcc-8004.4906.1 0.53 +0.4 4,664,872 + Xcc-8004.4906.1 0.71 -1.0 4,664,872 + Xcc-8004.4906.1 0.71 -0.6 4,665,132 - -1.1 4,665,132 - -0.0 4,665,253 + -0.4 4,665,381 - +0.4 4,665,412 + -1.6 4,665,412 + +0.4 4,665,412 + +1.0 4,665,413 - -1.4 4,665,413 - +0.6 4,665,413 - -0.5 4,665,413 - -0.0 4,665,527 - -1.1 4,665,992 - Xcc-8004.4907.1 0.19 -0.3 4,666,033 + Xcc-8004.4907.1 0.20 -0.2 4,666,033 + Xcc-8004.4907.1 0.20 -1.1 4,666,033 + Xcc-8004.4907.1 0.20 -2.2 4,666,034 - Xcc-8004.4907.1 0.20 +2.0 4,666,080 - Xcc-8004.4907.1 0.21 -0.6 4,666,143 - Xcc-8004.4907.1 0.23 -2.9
Or see this region's nucleotide sequence