Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4741.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4740.1 and Xcc-8004.4741.1 are separated by 21 nucleotidesXcc-8004.4741.1 and Xcc-8004.4742.1 overlap by 1 nucleotides Xcc-8004.4740.1: Xcc-8004.4740.1 - Polymyxin resistance protein ArnT, undecaprenyl phosphate-alpha-L-Ara4N transferase; Melittin resistance protein PqaB, at 4,510,515 to 4,512,236 Xcc-8004.4740.1 Xcc-8004.4741.1: Xcc-8004.4741.1 - hypothetical protein, at 4,512,258 to 4,513,568 Xcc-8004.4741.1 Xcc-8004.4742.1: Xcc-8004.4742.1 - Methionyl-tRNA formyltransferase (EC 2.1.2.9), at 4,513,568 to 4,514,707 Xcc-8004.4742.1 Position (kb) 4512 4513 4514Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.258 kb on - strand, within Xcc-8004.4740.1at 4511.329 kb on + strand, within Xcc-8004.4740.1at 4511.330 kb on - strand, within Xcc-8004.4740.1at 4511.330 kb on - strand, within Xcc-8004.4740.1at 4511.385 kb on + strand, within Xcc-8004.4740.1at 4511.385 kb on + strand, within Xcc-8004.4740.1at 4511.385 kb on + strand, within Xcc-8004.4740.1at 4511.386 kb on - strand, within Xcc-8004.4740.1at 4511.386 kb on - strand, within Xcc-8004.4740.1at 4511.386 kb on - strand, within Xcc-8004.4740.1at 4511.386 kb on - strand, within Xcc-8004.4740.1at 4511.431 kb on + strand, within Xcc-8004.4740.1at 4511.431 kb on + strand, within Xcc-8004.4740.1at 4511.431 kb on + strand, within Xcc-8004.4740.1at 4511.431 kb on + strand, within Xcc-8004.4740.1at 4511.432 kb on - strand, within Xcc-8004.4740.1at 4511.432 kb on - strand, within Xcc-8004.4740.1at 4511.432 kb on - strand, within Xcc-8004.4740.1at 4511.467 kb on + strand, within Xcc-8004.4740.1at 4511.468 kb on - strand, within Xcc-8004.4740.1at 4511.506 kb on + strand, within Xcc-8004.4740.1at 4511.506 kb on + strand, within Xcc-8004.4740.1at 4511.506 kb on + strand, within Xcc-8004.4740.1at 4511.507 kb on - strand, within Xcc-8004.4740.1at 4511.507 kb on - strand, within Xcc-8004.4740.1at 4511.516 kb on - strand, within Xcc-8004.4740.1at 4511.718 kb on + strand, within Xcc-8004.4740.1at 4511.719 kb on - strand, within Xcc-8004.4740.1at 4511.719 kb on - strand, within Xcc-8004.4740.1at 4511.784 kb on + strand, within Xcc-8004.4740.1at 4511.785 kb on - strand, within Xcc-8004.4740.1at 4511.785 kb on - strand, within Xcc-8004.4740.1at 4511.791 kb on + strand, within Xcc-8004.4740.1at 4511.791 kb on + strand, within Xcc-8004.4740.1at 4511.791 kb on + strand, within Xcc-8004.4740.1at 4511.792 kb on - strand, within Xcc-8004.4740.1at 4511.792 kb on - strand, within Xcc-8004.4740.1at 4511.792 kb on - strand, within Xcc-8004.4740.1at 4511.890 kb on + strand, within Xcc-8004.4740.1at 4511.890 kb on + strand, within Xcc-8004.4740.1at 4511.891 kb on - strand, within Xcc-8004.4740.1at 4511.891 kb on - strand, within Xcc-8004.4740.1at 4511.891 kb on - strand, within Xcc-8004.4740.1at 4511.932 kb on + strand, within Xcc-8004.4740.1at 4511.932 kb on + strand, within Xcc-8004.4740.1at 4511.932 kb on + strand, within Xcc-8004.4740.1at 4511.933 kb on - strand, within Xcc-8004.4740.1at 4512.010 kb on + strand, within Xcc-8004.4740.1at 4512.010 kb on + strand, within Xcc-8004.4740.1at 4512.010 kb on + strand, within Xcc-8004.4740.1at 4512.055 kb on + strand, within Xcc-8004.4740.1at 4512.055 kb on + strand, within Xcc-8004.4740.1at 4512.055 kb on + strand, within Xcc-8004.4740.1at 4512.055 kb on + strand, within Xcc-8004.4740.1at 4512.055 kb on + strand, within Xcc-8004.4740.1at 4512.055 kb on + strand, within Xcc-8004.4740.1at 4512.246 kb on + strandat 4512.247 kb on - strandat 4512.247 kb on - strandat 4512.270 kb on + strandat 4512.271 kb on - strandat 4512.271 kb on - strandat 4512.284 kb on - strandat 4512.448 kb on + strand, within Xcc-8004.4741.1at 4512.448 kb on + strand, within Xcc-8004.4741.1at 4512.448 kb on + strand, within Xcc-8004.4741.1at 4512.448 kb on + strand, within Xcc-8004.4741.1at 4512.448 kb on + strand, within Xcc-8004.4741.1at 4512.449 kb on - strand, within Xcc-8004.4741.1at 4512.449 kb on - strand, within Xcc-8004.4741.1at 4512.449 kb on - strand, within Xcc-8004.4741.1at 4512.449 kb on - strand, within Xcc-8004.4741.1at 4512.449 kb on - strand, within Xcc-8004.4741.1at 4512.449 kb on - strand, within Xcc-8004.4741.1at 4513.006 kb on + strand, within Xcc-8004.4741.1at 4513.006 kb on + strand, within Xcc-8004.4741.1at 4513.006 kb on + strand, within Xcc-8004.4741.1at 4513.006 kb on + strand, within Xcc-8004.4741.1at 4513.006 kb on + strand, within Xcc-8004.4741.1at 4513.006 kb on + strand, within Xcc-8004.4741.1at 4513.006 kb on + strand, within Xcc-8004.4741.1at 4513.007 kb on - strand, within Xcc-8004.4741.1at 4513.007 kb on - strand, within Xcc-8004.4741.1at 4513.007 kb on - strand, within Xcc-8004.4741.1at 4513.007 kb on - strand, within Xcc-8004.4741.1at 4513.007 kb on - strand, within Xcc-8004.4741.1at 4513.007 kb on - strand, within Xcc-8004.4741.1at 4513.035 kb on + strand, within Xcc-8004.4741.1at 4513.378 kb on + strand, within Xcc-8004.4741.1at 4513.378 kb on + strand, within Xcc-8004.4741.1at 4513.379 kb on - strand, within Xcc-8004.4741.1at 4514.492 kb on - strand, within Xcc-8004.4742.1at 4514.492 kb on - strand, within Xcc-8004.4742.1at 4514.543 kb on - strand, within Xcc-8004.4742.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,511,258 - Xcc-8004.4740.1 0.43 -0.4
4,511,258 - Xcc-8004.4740.1 0.43 -2.2
4,511,258 - Xcc-8004.4740.1 0.43 +0.2
4,511,258 - Xcc-8004.4740.1 0.43 +1.0
4,511,258 - Xcc-8004.4740.1 0.43 -0.0
4,511,258 - Xcc-8004.4740.1 0.43 +0.5
4,511,258 - Xcc-8004.4740.1 0.43 -2.8
4,511,258 - Xcc-8004.4740.1 0.43 -1.1
4,511,258 - Xcc-8004.4740.1 0.43 +0.7
4,511,258 - Xcc-8004.4740.1 0.43 +0.3
4,511,258 - Xcc-8004.4740.1 0.43 -0.1
4,511,329 + Xcc-8004.4740.1 0.47 +0.1
4,511,330 - Xcc-8004.4740.1 0.47 +0.1
4,511,330 - Xcc-8004.4740.1 0.47 -0.9
4,511,385 + Xcc-8004.4740.1 0.51 +0.5
4,511,385 + Xcc-8004.4740.1 0.51 +0.1
4,511,385 + Xcc-8004.4740.1 0.51 +0.1
4,511,386 - Xcc-8004.4740.1 0.51 -0.5
4,511,386 - Xcc-8004.4740.1 0.51 -1.3
4,511,386 - Xcc-8004.4740.1 0.51 -2.9
4,511,386 - Xcc-8004.4740.1 0.51 -0.4
4,511,431 + Xcc-8004.4740.1 0.53 +0.3
4,511,431 + Xcc-8004.4740.1 0.53 +2.0
4,511,431 + Xcc-8004.4740.1 0.53 -0.2
4,511,431 + Xcc-8004.4740.1 0.53 -0.8
4,511,432 - Xcc-8004.4740.1 0.53 -0.4
4,511,432 - Xcc-8004.4740.1 0.53 +1.8
4,511,432 - Xcc-8004.4740.1 0.53 +0.7
4,511,467 + Xcc-8004.4740.1 0.55 -1.2
4,511,468 - Xcc-8004.4740.1 0.55 +0.2
4,511,506 + Xcc-8004.4740.1 0.58 -0.5
4,511,506 + Xcc-8004.4740.1 0.58 +0.9
4,511,506 + Xcc-8004.4740.1 0.58 +0.0
4,511,507 - Xcc-8004.4740.1 0.58 -0.8
4,511,507 - Xcc-8004.4740.1 0.58 +0.2
4,511,516 - Xcc-8004.4740.1 0.58 +0.3
4,511,718 + Xcc-8004.4740.1 0.70 +1.4
4,511,719 - Xcc-8004.4740.1 0.70 -0.2
4,511,719 - Xcc-8004.4740.1 0.70 -0.1
4,511,784 + Xcc-8004.4740.1 0.74 -0.8
4,511,785 - Xcc-8004.4740.1 0.74 +0.3
4,511,785 - Xcc-8004.4740.1 0.74 +0.1
4,511,791 + Xcc-8004.4740.1 0.74 -0.2
4,511,791 + Xcc-8004.4740.1 0.74 -0.9
4,511,791 + Xcc-8004.4740.1 0.74 -1.2
4,511,792 - Xcc-8004.4740.1 0.74 +0.6
4,511,792 - Xcc-8004.4740.1 0.74 +1.3
4,511,792 - Xcc-8004.4740.1 0.74 +1.4
4,511,890 + Xcc-8004.4740.1 0.80 -0.1
4,511,890 + Xcc-8004.4740.1 0.80 +0.3
4,511,891 - Xcc-8004.4740.1 0.80 -0.9
4,511,891 - Xcc-8004.4740.1 0.80 -1.9
4,511,891 - Xcc-8004.4740.1 0.80 -1.4
4,511,932 + Xcc-8004.4740.1 0.82 -1.6
4,511,932 + Xcc-8004.4740.1 0.82 -0.5
4,511,932 + Xcc-8004.4740.1 0.82 +0.1
4,511,933 - Xcc-8004.4740.1 0.82 +0.7
4,512,010 + Xcc-8004.4740.1 0.87 +0.3
4,512,010 + Xcc-8004.4740.1 0.87 +1.4
4,512,010 + Xcc-8004.4740.1 0.87 -0.7
4,512,055 + Xcc-8004.4740.1 0.89 -1.1
4,512,055 + Xcc-8004.4740.1 0.89 -0.6
4,512,055 + Xcc-8004.4740.1 0.89 +0.2
4,512,055 + Xcc-8004.4740.1 0.89 +0.0
4,512,055 + Xcc-8004.4740.1 0.89 +0.0
4,512,055 + Xcc-8004.4740.1 0.89 +0.6
4,512,246 + -2.1
4,512,247 - +0.6
4,512,247 - -1.0
4,512,270 + +0.7
4,512,271 - -0.3
4,512,271 - +0.9
4,512,284 - +0.1
4,512,448 + Xcc-8004.4741.1 0.14 -0.9
4,512,448 + Xcc-8004.4741.1 0.14 -1.9
4,512,448 + Xcc-8004.4741.1 0.14 -1.7
4,512,448 + Xcc-8004.4741.1 0.14 +0.3
4,512,448 + Xcc-8004.4741.1 0.14 -0.2
4,512,449 - Xcc-8004.4741.1 0.15 +0.8
4,512,449 - Xcc-8004.4741.1 0.15 -0.8
4,512,449 - Xcc-8004.4741.1 0.15 +1.2
4,512,449 - Xcc-8004.4741.1 0.15 -0.1
4,512,449 - Xcc-8004.4741.1 0.15 -1.4
4,512,449 - Xcc-8004.4741.1 0.15 -0.5
4,513,006 + Xcc-8004.4741.1 0.57 -0.4
4,513,006 + Xcc-8004.4741.1 0.57 +1.2
4,513,006 + Xcc-8004.4741.1 0.57 -0.5
4,513,006 + Xcc-8004.4741.1 0.57 -0.9
4,513,006 + Xcc-8004.4741.1 0.57 -0.9
4,513,006 + Xcc-8004.4741.1 0.57 -1.2
4,513,006 + Xcc-8004.4741.1 0.57 -0.8
4,513,007 - Xcc-8004.4741.1 0.57 +0.2
4,513,007 - Xcc-8004.4741.1 0.57 -2.3
4,513,007 - Xcc-8004.4741.1 0.57 +0.4
4,513,007 - Xcc-8004.4741.1 0.57 -0.1
4,513,007 - Xcc-8004.4741.1 0.57 +1.2
4,513,007 - Xcc-8004.4741.1 0.57 -0.7
4,513,035 + Xcc-8004.4741.1 0.59 +0.4
4,513,378 + Xcc-8004.4741.1 0.85 -0.6
4,513,378 + Xcc-8004.4741.1 0.85 +1.4
4,513,379 - Xcc-8004.4741.1 0.86 -1.1
4,514,492 - Xcc-8004.4742.1 0.81 -1.3
4,514,492 - Xcc-8004.4742.1 0.81 -0.8
4,514,543 - Xcc-8004.4742.1 0.86 -0.2

Or see this region's nucleotide sequence