Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4486.1 and Xcc-8004.4487.1 are separated by 228 nucleotides Xcc-8004.4487.1 and Xcc-8004.4488.1 overlap by 1 nucleotides
Xcc-8004.4486.1: Xcc-8004.4486.1 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 4,294,356 to 4,295,411
Xcc-8004.4486.1
Xcc-8004.4487.1: Xcc-8004.4487.1 - Electron transfer flavoprotein, beta subunit, at 4,295,640 to 4,296,386
Xcc-8004.4487.1
Xcc-8004.4488.1: Xcc-8004.4488.1 - Electron transfer flavoprotein, alpha subunit, at 4,296,386 to 4,297,330
Xcc-8004.4488.1
Position (kb) 4295
4296
4297 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.672 kb on + strand, within Xcc-8004.4486.1 at 4294.673 kb on - strand, within Xcc-8004.4486.1 at 4294.673 kb on - strand, within Xcc-8004.4486.1 at 4294.673 kb on - strand, within Xcc-8004.4486.1 at 4294.768 kb on + strand, within Xcc-8004.4486.1 at 4294.769 kb on - strand, within Xcc-8004.4486.1 at 4294.769 kb on - strand, within Xcc-8004.4486.1 at 4294.769 kb on - strand, within Xcc-8004.4486.1 at 4294.769 kb on - strand, within Xcc-8004.4486.1 at 4294.837 kb on + strand, within Xcc-8004.4486.1 at 4294.837 kb on + strand, within Xcc-8004.4486.1 at 4294.838 kb on - strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.846 kb on + strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.847 kb on - strand, within Xcc-8004.4486.1 at 4294.885 kb on + strand, within Xcc-8004.4486.1 at 4294.885 kb on + strand, within Xcc-8004.4486.1 at 4294.885 kb on + strand, within Xcc-8004.4486.1 at 4294.885 kb on + strand, within Xcc-8004.4486.1 at 4294.885 kb on + strand, within Xcc-8004.4486.1 at 4294.886 kb on - strand, within Xcc-8004.4486.1 at 4294.886 kb on - strand, within Xcc-8004.4486.1 at 4294.886 kb on - strand, within Xcc-8004.4486.1 at 4294.886 kb on - strand, within Xcc-8004.4486.1 at 4294.957 kb on + strand, within Xcc-8004.4486.1 at 4294.958 kb on - strand, within Xcc-8004.4486.1 at 4295.002 kb on + strand, within Xcc-8004.4486.1 at 4295.002 kb on + strand, within Xcc-8004.4486.1 at 4295.002 kb on + strand, within Xcc-8004.4486.1 at 4295.002 kb on + strand, within Xcc-8004.4486.1 at 4295.003 kb on - strand, within Xcc-8004.4486.1 at 4295.003 kb on - strand, within Xcc-8004.4486.1 at 4295.003 kb on - strand, within Xcc-8004.4486.1 at 4295.071 kb on + strand, within Xcc-8004.4486.1 at 4295.255 kb on + strand, within Xcc-8004.4486.1 at 4295.255 kb on + strand, within Xcc-8004.4486.1 at 4295.255 kb on + strand, within Xcc-8004.4486.1 at 4295.255 kb on + strand, within Xcc-8004.4486.1 at 4295.255 kb on + strand, within Xcc-8004.4486.1 at 4295.256 kb on - strand, within Xcc-8004.4486.1 at 4295.256 kb on - strand, within Xcc-8004.4486.1 at 4295.256 kb on - strand, within Xcc-8004.4486.1 at 4295.256 kb on - strand, within Xcc-8004.4486.1 at 4295.256 kb on - strand, within Xcc-8004.4486.1 at 4295.288 kb on + strand, within Xcc-8004.4486.1 at 4295.289 kb on - strand, within Xcc-8004.4486.1 at 4295.289 kb on - strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.305 kb on + strand, within Xcc-8004.4486.1 at 4295.306 kb on - strand at 4295.306 kb on - strand at 4295.306 kb on - strand at 4295.306 kb on - strand at 4295.306 kb on - strand at 4295.397 kb on + strand at 4295.397 kb on + strand at 4295.397 kb on + strand at 4295.398 kb on - strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.412 kb on + strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.413 kb on - strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.416 kb on + strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.417 kb on - strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.465 kb on + strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.466 kb on - strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.467 kb on + strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.468 kb on - strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.490 kb on + strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.491 kb on - strand at 4295.618 kb on + strand at 4295.618 kb on + strand at 4295.618 kb on + strand at 4295.618 kb on + strand at 4295.634 kb on + strand at 4297.352 kb on + strand at 4297.352 kb on + strand at 4297.353 kb on - strand at 4297.353 kb on - strand at 4297.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 4,294,672 + Xcc-8004.4486.1 0.30 -0.9 4,294,672 + Xcc-8004.4486.1 0.30 -1.9 4,294,672 + Xcc-8004.4486.1 0.30 -1.6 4,294,672 + Xcc-8004.4486.1 0.30 -1.0 4,294,672 + Xcc-8004.4486.1 0.30 -0.9 4,294,672 + Xcc-8004.4486.1 0.30 -1.3 4,294,673 - Xcc-8004.4486.1 0.30 -0.3 4,294,673 - Xcc-8004.4486.1 0.30 -1.9 4,294,673 - Xcc-8004.4486.1 0.30 -1.0 4,294,768 + Xcc-8004.4486.1 0.39 -0.9 4,294,769 - Xcc-8004.4486.1 0.39 -0.8 4,294,769 - Xcc-8004.4486.1 0.39 -0.5 4,294,769 - Xcc-8004.4486.1 0.39 +0.0 4,294,769 - Xcc-8004.4486.1 0.39 -1.3 4,294,837 + Xcc-8004.4486.1 0.46 -1.6 4,294,837 + Xcc-8004.4486.1 0.46 -2.3 4,294,838 - Xcc-8004.4486.1 0.46 -2.1 4,294,846 + Xcc-8004.4486.1 0.46 -3.8 4,294,846 + Xcc-8004.4486.1 0.46 -1.2 4,294,846 + Xcc-8004.4486.1 0.46 -0.6 4,294,846 + Xcc-8004.4486.1 0.46 -3.0 4,294,846 + Xcc-8004.4486.1 0.46 -2.7 4,294,846 + Xcc-8004.4486.1 0.46 -0.5 4,294,846 + Xcc-8004.4486.1 0.46 -1.7 4,294,846 + Xcc-8004.4486.1 0.46 -2.3 4,294,846 + Xcc-8004.4486.1 0.46 -0.5 4,294,846 + Xcc-8004.4486.1 0.46 -2.8 4,294,846 + Xcc-8004.4486.1 0.46 -0.8 4,294,846 + Xcc-8004.4486.1 0.46 -0.7 4,294,846 + Xcc-8004.4486.1 0.46 -1.6 4,294,847 - Xcc-8004.4486.1 0.46 -1.2 4,294,847 - Xcc-8004.4486.1 0.46 -3.7 4,294,847 - Xcc-8004.4486.1 0.46 -1.7 4,294,847 - Xcc-8004.4486.1 0.46 -0.3 4,294,847 - Xcc-8004.4486.1 0.46 -1.0 4,294,847 - Xcc-8004.4486.1 0.46 -2.7 4,294,885 + Xcc-8004.4486.1 0.50 -2.6 4,294,885 + Xcc-8004.4486.1 0.50 -1.5 4,294,885 + Xcc-8004.4486.1 0.50 -1.4 4,294,885 + Xcc-8004.4486.1 0.50 -1.6 4,294,885 + Xcc-8004.4486.1 0.50 -1.6 4,294,886 - Xcc-8004.4486.1 0.50 +0.0 4,294,886 - Xcc-8004.4486.1 0.50 -1.8 4,294,886 - Xcc-8004.4486.1 0.50 -0.8 4,294,886 - Xcc-8004.4486.1 0.50 -0.7 4,294,957 + Xcc-8004.4486.1 0.57 -1.3 4,294,958 - Xcc-8004.4486.1 0.57 -0.2 4,295,002 + Xcc-8004.4486.1 0.61 -0.1 4,295,002 + Xcc-8004.4486.1 0.61 -0.7 4,295,002 + Xcc-8004.4486.1 0.61 -1.0 4,295,002 + Xcc-8004.4486.1 0.61 -1.8 4,295,003 - Xcc-8004.4486.1 0.61 +0.1 4,295,003 - Xcc-8004.4486.1 0.61 -1.3 4,295,003 - Xcc-8004.4486.1 0.61 -1.8 4,295,071 + Xcc-8004.4486.1 0.68 -0.7 4,295,255 + Xcc-8004.4486.1 0.85 -0.4 4,295,255 + Xcc-8004.4486.1 0.85 -1.8 4,295,255 + Xcc-8004.4486.1 0.85 -0.9 4,295,255 + Xcc-8004.4486.1 0.85 -1.0 4,295,255 + Xcc-8004.4486.1 0.85 +0.0 4,295,256 - Xcc-8004.4486.1 0.85 -2.7 4,295,256 - Xcc-8004.4486.1 0.85 -1.9 4,295,256 - Xcc-8004.4486.1 0.85 -0.3 4,295,256 - Xcc-8004.4486.1 0.85 -0.6 4,295,256 - Xcc-8004.4486.1 0.85 +0.2 4,295,288 + Xcc-8004.4486.1 0.88 -1.9 4,295,289 - Xcc-8004.4486.1 0.88 -0.3 4,295,289 - Xcc-8004.4486.1 0.88 -0.1 4,295,305 + Xcc-8004.4486.1 0.90 -1.1 4,295,305 + Xcc-8004.4486.1 0.90 -1.5 4,295,305 + Xcc-8004.4486.1 0.90 -2.1 4,295,305 + Xcc-8004.4486.1 0.90 -1.8 4,295,305 + Xcc-8004.4486.1 0.90 +0.3 4,295,305 + Xcc-8004.4486.1 0.90 -0.9 4,295,306 - +0.3 4,295,306 - -0.5 4,295,306 - +0.1 4,295,306 - -0.3 4,295,306 - +1.0 4,295,397 + -1.0 4,295,397 + +0.6 4,295,397 + -1.9 4,295,398 - -1.3 4,295,412 + -0.5 4,295,412 + -0.5 4,295,412 + -3.0 4,295,412 + -1.1 4,295,412 + -0.6 4,295,412 + -1.2 4,295,412 + -0.5 4,295,413 - -1.3 4,295,413 - -0.3 4,295,413 - -3.4 4,295,413 - -1.1 4,295,413 - -1.6 4,295,413 - -1.5 4,295,413 - -1.7 4,295,413 - -3.7 4,295,416 + -0.5 4,295,416 + -1.0 4,295,416 + -2.0 4,295,416 + +1.0 4,295,416 + -0.8 4,295,416 + -1.3 4,295,416 + -0.5 4,295,416 + -2.3 4,295,416 + -1.3 4,295,416 + -0.4 4,295,416 + -1.0 4,295,416 + -2.5 4,295,416 + +0.9 4,295,416 + +0.2 4,295,417 - -0.5 4,295,417 - -1.8 4,295,417 - -0.1 4,295,417 - -0.4 4,295,417 - -0.7 4,295,417 - -1.8 4,295,417 - +0.0 4,295,465 + -1.0 4,295,465 + +1.0 4,295,465 + -0.8 4,295,465 + -1.3 4,295,465 + +0.7 4,295,465 + -0.7 4,295,465 + -0.3 4,295,465 + +0.4 4,295,465 + +0.3 4,295,466 - +3.0 4,295,466 - +0.1 4,295,466 - +2.2 4,295,466 - -0.3 4,295,466 - -0.2 4,295,466 - +1.8 4,295,466 - -0.3 4,295,466 - -1.3 4,295,466 - -0.6 4,295,466 - -1.0 4,295,466 - -0.6 4,295,466 - -0.0 4,295,466 - +3.0 4,295,466 - +0.8 4,295,466 - -0.5 4,295,467 + -0.7 4,295,467 + -1.3 4,295,467 + -1.1 4,295,467 + +0.0 4,295,467 + -0.7 4,295,467 + -0.1 4,295,467 + -0.2 4,295,467 + +0.5 4,295,467 + +0.7 4,295,467 + +0.9 4,295,467 + +1.0 4,295,467 + -2.5 4,295,467 + +0.2 4,295,467 + -0.4 4,295,467 + +0.4 4,295,467 + +1.2 4,295,467 + +2.6 4,295,467 + +0.8 4,295,467 + -1.5 4,295,467 + +0.5 4,295,467 + -1.0 4,295,468 - -0.2 4,295,468 - +0.0 4,295,468 - -0.4 4,295,468 - -1.4 4,295,468 - +0.7 4,295,468 - +0.0 4,295,468 - +0.4 4,295,468 - -0.4 4,295,468 - -0.2 4,295,468 - +0.7 4,295,468 - +0.9 4,295,468 - -0.4 4,295,468 - +0.5 4,295,468 - -0.7 4,295,468 - -0.3 4,295,468 - -0.1 4,295,468 - +0.2 4,295,468 - +0.0 4,295,468 - +1.9 4,295,468 - -0.1 4,295,468 - +0.2 4,295,468 - -0.1 4,295,468 - -1.3 4,295,468 - -0.8 4,295,468 - -0.2 4,295,468 - -0.1 4,295,468 - -1.6 4,295,490 + -1.9 4,295,490 + -0.1 4,295,490 + -0.5 4,295,490 + -1.1 4,295,490 + -0.9 4,295,490 + +0.6 4,295,490 + +0.4 4,295,491 - -0.6 4,295,491 - +1.2 4,295,491 - -0.1 4,295,491 - -1.3 4,295,491 - +0.1 4,295,491 - -0.2 4,295,491 - -0.0 4,295,618 + +1.2 4,295,618 + -1.1 4,295,618 + -0.4 4,295,618 + -0.3 4,295,634 + +0.3 4,297,352 + -1.1 4,297,352 + +0.3 4,297,353 - +0.5 4,297,353 - +1.2 4,297,366 - -0.2
Or see this region's nucleotide sequence