Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4326.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,145,828	+		Xcc-8004.4325.1	0.73	-0.4
4,145,835	-		Xcc-8004.4325.1	0.74	+0.4
4,145,835	-		Xcc-8004.4325.1	0.74	+0.3
4,145,870	+		Xcc-8004.4325.1	0.76	-1.0
4,145,871	-		Xcc-8004.4325.1	0.76	-0.7
4,145,871	-		Xcc-8004.4325.1	0.76	+0.3
4,146,265	-				+0.5
4,146,283	+				+1.9
4,146,285	+				+0.8
4,146,287	+				-0.6
4,146,288	-				+0.7
4,146,442	+				+0.9
4,146,532	+				-0.4
4,146,537	-				-0.8
4,146,606	-				-0.0
4,146,667	-				-2.2
4,146,667	-				-0.4
4,146,667	-				-1.6
4,146,708	+				-0.1
4,146,709	-				-0.1
4,146,775	+				-0.2
4,147,035	+		Xcc-8004.4326.1	0.44	-0.8
4,147,035	+		Xcc-8004.4326.1	0.44	-1.2
4,147,060	+		Xcc-8004.4326.1	0.48	-0.4
4,147,123	+		Xcc-8004.4326.1	0.59	+0.1
4,147,174	+		Xcc-8004.4326.1	0.67	-0.4
4,147,175	-		Xcc-8004.4326.1	0.68	-1.1
4,147,261	-		Xcc-8004.4326.1	0.82	+0.6
4,147,507	+		Xcc-8004.4327.1	0.84	+0.4
4,147,672	+		Xcc-8004.4328.1	0.15	-1.0
4,147,679	-		Xcc-8004.4328.1	0.16	-0.4
4,147,679	-		Xcc-8004.4328.1	0.16	+0.1
4,147,679	-		Xcc-8004.4328.1	0.16	+0.1
4,147,742	-		Xcc-8004.4328.1	0.24	-0.6
4,147,827	+		Xcc-8004.4328.1	0.35	+0.3
4,147,828	-		Xcc-8004.4328.1	0.35	+0.7
4,147,828	-		Xcc-8004.4328.1	0.35	+0.2
4,147,999	-		Xcc-8004.4328.1	0.58	+0.5
4,148,002	+		Xcc-8004.4328.1	0.58	+0.1
4,148,178	+		Xcc-8004.4328.1	0.81	+0.8
4,148,323	-				-0.1
4,148,353	+				-1.3
4,148,354	-				-0.8