Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4280.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4278.1 and Xcc-8004.4279.1 are separated by 54 nucleotidesXcc-8004.4279.1 and Xcc-8004.4280.1 overlap by 1 nucleotidesXcc-8004.4280.1 and Xcc-8004.4281.1 overlap by 1 nucleotidesXcc-8004.4281.1 and Xcc-8004.4282.1 overlap by 1 nucleotides Xcc-8004.4278.1: Xcc-8004.4278.1 - Prolipoprotein diacylglyceryl transferase (EC 2.4.99.-), at 4,094,625 to 4,095,515 Xcc-8004.4278.1 Xcc-8004.4279.1: Xcc-8004.4279.1 - FIG004694: Hypothetical protein, at 4,095,570 to 4,096,061 Xcc-8004.4279.1 Xcc-8004.4280.1: Xcc-8004.4280.1 - Beta-propeller domains of methanol dehydrogenase type, at 4,096,061 to 4,096,966 Xcc-8004.4280.1 Xcc-8004.4281.1: Xcc-8004.4281.1 - hypothetical protein, at 4,096,966 to 4,097,319 Xcc-8004.4281.1 Xcc-8004.4282.1: Xcc-8004.4282.1 - LemA family protein, at 4,097,319 to 4,098,092 Xcc-8004.4282.1 Position (kb) 4096 4097Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4095.509 kb on - strandat 4095.509 kb on - strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.560 kb on + strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.561 kb on - strandat 4095.807 kb on + strand, within Xcc-8004.4279.1at 4095.807 kb on + strand, within Xcc-8004.4279.1at 4095.807 kb on + strand, within Xcc-8004.4279.1at 4095.807 kb on + strand, within Xcc-8004.4279.1at 4095.808 kb on - strand, within Xcc-8004.4279.1at 4095.808 kb on - strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.814 kb on + strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4095.815 kb on - strand, within Xcc-8004.4279.1at 4096.322 kb on + strand, within Xcc-8004.4280.1at 4096.322 kb on + strand, within Xcc-8004.4280.1at 4096.322 kb on + strand, within Xcc-8004.4280.1at 4096.323 kb on - strand, within Xcc-8004.4280.1at 4096.323 kb on - strand, within Xcc-8004.4280.1at 4096.414 kb on + strand, within Xcc-8004.4280.1at 4096.414 kb on + strand, within Xcc-8004.4280.1at 4096.414 kb on + strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1at 4096.415 kb on - strand, within Xcc-8004.4280.1at 4096.557 kb on + strand, within Xcc-8004.4280.1at 4096.557 kb on + strand, within Xcc-8004.4280.1at 4096.557 kb on + strand, within Xcc-8004.4280.1at 4096.557 kb on + strand, within Xcc-8004.4280.1at 4096.558 kb on - strand, within Xcc-8004.4280.1at 4096.611 kb on + strand, within Xcc-8004.4280.1at 4096.719 kb on + strand, within Xcc-8004.4280.1at 4096.719 kb on + strand, within Xcc-8004.4280.1at 4096.719 kb on + strand, within Xcc-8004.4280.1at 4096.719 kb on + strand, within Xcc-8004.4280.1at 4096.719 kb on + strand, within Xcc-8004.4280.1at 4096.719 kb on + strand, within Xcc-8004.4280.1at 4096.719 kb on + strand, within Xcc-8004.4280.1at 4096.720 kb on - strand, within Xcc-8004.4280.1at 4096.720 kb on - strand, within Xcc-8004.4280.1at 4096.720 kb on - strand, within Xcc-8004.4280.1at 4096.720 kb on - strand, within Xcc-8004.4280.1at 4096.720 kb on - strand, within Xcc-8004.4280.1at 4096.720 kb on - strand, within Xcc-8004.4280.1at 4096.720 kb on - strand, within Xcc-8004.4280.1at 4096.720 kb on - strand, within Xcc-8004.4280.1at 4096.720 kb on - strand, within Xcc-8004.4280.1at 4096.720 kb on - strand, within Xcc-8004.4280.1at 4096.850 kb on - strand, within Xcc-8004.4280.1at 4096.951 kb on - strandat 4096.967 kb on + strandat 4096.967 kb on + strandat 4096.967 kb on + strandat 4097.001 kb on + strandat 4097.001 kb on + strandat 4097.001 kb on + strandat 4097.001 kb on + strandat 4097.001 kb on + strandat 4097.002 kb on - strand, within Xcc-8004.4281.1at 4097.002 kb on - strand, within Xcc-8004.4281.1at 4097.002 kb on - strand, within Xcc-8004.4281.1at 4097.002 kb on - strand, within Xcc-8004.4281.1at 4097.002 kb on - strand, within Xcc-8004.4281.1at 4097.002 kb on - strand, within Xcc-8004.4281.1at 4097.124 kb on + strand, within Xcc-8004.4281.1at 4097.175 kb on + strand, within Xcc-8004.4281.1at 4097.175 kb on + strand, within Xcc-8004.4281.1at 4097.293 kb on + strandat 4097.293 kb on + strandat 4097.293 kb on + strandat 4097.294 kb on - strandat 4097.294 kb on - strandat 4097.294 kb on - strandat 4097.294 kb on - strandat 4097.294 kb on - strandat 4097.294 kb on - strandat 4097.294 kb on - strandat 4097.294 kb on - strandat 4097.320 kb on + strandat 4097.321 kb on - strandat 4097.321 kb on - strandat 4097.476 kb on + strand, within Xcc-8004.4282.1at 4097.476 kb on + strand, within Xcc-8004.4282.1at 4097.476 kb on + strand, within Xcc-8004.4282.1at 4097.476 kb on + strand, within Xcc-8004.4282.1at 4097.476 kb on + strand, within Xcc-8004.4282.1at 4097.476 kb on + strand, within Xcc-8004.4282.1at 4097.476 kb on + strand, within Xcc-8004.4282.1at 4097.477 kb on - strand, within Xcc-8004.4282.1at 4097.477 kb on - strand, within Xcc-8004.4282.1at 4097.477 kb on - strand, within Xcc-8004.4282.1at 4097.477 kb on - strand, within Xcc-8004.4282.1at 4097.477 kb on - strand, within Xcc-8004.4282.1at 4097.477 kb on - strand, within Xcc-8004.4282.1at 4097.477 kb on - strand, within Xcc-8004.4282.1at 4097.485 kb on + strand, within Xcc-8004.4282.1at 4097.485 kb on + strand, within Xcc-8004.4282.1at 4097.486 kb on - strand, within Xcc-8004.4282.1at 4097.486 kb on - strand, within Xcc-8004.4282.1at 4097.486 kb on - strand, within Xcc-8004.4282.1at 4097.506 kb on + strand, within Xcc-8004.4282.1at 4097.507 kb on - strand, within Xcc-8004.4282.1at 4097.507 kb on - strand, within Xcc-8004.4282.1at 4097.596 kb on + strand, within Xcc-8004.4282.1at 4097.596 kb on + strand, within Xcc-8004.4282.1at 4097.597 kb on - strand, within Xcc-8004.4282.1at 4097.761 kb on + strand, within Xcc-8004.4282.1at 4097.762 kb on - strand, within Xcc-8004.4282.1at 4097.762 kb on - strand, within Xcc-8004.4282.1at 4097.762 kb on - strand, within Xcc-8004.4282.1at 4097.875 kb on + strand, within Xcc-8004.4282.1at 4097.875 kb on + strand, within Xcc-8004.4282.1at 4097.876 kb on - strand, within Xcc-8004.4282.1at 4097.876 kb on - strand, within Xcc-8004.4282.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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4,095,509 - -0.1
4,095,509 - -0.4
4,095,560 + -1.1
4,095,560 + +0.6
4,095,560 + -1.0
4,095,560 + +3.4
4,095,560 + -1.0
4,095,561 - -1.0
4,095,561 - -0.8
4,095,561 - +0.5
4,095,561 - +0.2
4,095,561 - +0.5
4,095,561 - -0.2
4,095,561 - +0.2
4,095,561 - -0.8
4,095,561 - -0.7
4,095,807 + Xcc-8004.4279.1 0.48 +1.5
4,095,807 + Xcc-8004.4279.1 0.48 -0.4
4,095,807 + Xcc-8004.4279.1 0.48 -0.2
4,095,807 + Xcc-8004.4279.1 0.48 -0.8
4,095,808 - Xcc-8004.4279.1 0.48 +0.7
4,095,808 - Xcc-8004.4279.1 0.48 -1.5
4,095,814 + Xcc-8004.4279.1 0.50 -0.1
4,095,814 + Xcc-8004.4279.1 0.50 -0.2
4,095,814 + Xcc-8004.4279.1 0.50 +0.2
4,095,814 + Xcc-8004.4279.1 0.50 -1.4
4,095,814 + Xcc-8004.4279.1 0.50 +0.8
4,095,814 + Xcc-8004.4279.1 0.50 -0.1
4,095,814 + Xcc-8004.4279.1 0.50 -0.2
4,095,814 + Xcc-8004.4279.1 0.50 -0.5
4,095,815 - Xcc-8004.4279.1 0.50 -1.8
4,095,815 - Xcc-8004.4279.1 0.50 +1.4
4,095,815 - Xcc-8004.4279.1 0.50 -0.6
4,095,815 - Xcc-8004.4279.1 0.50 -1.6
4,095,815 - Xcc-8004.4279.1 0.50 -0.1
4,095,815 - Xcc-8004.4279.1 0.50 -0.1
4,095,815 - Xcc-8004.4279.1 0.50 -0.7
4,096,322 + Xcc-8004.4280.1 0.29 -1.1
4,096,322 + Xcc-8004.4280.1 0.29 +1.4
4,096,322 + Xcc-8004.4280.1 0.29 +0.3
4,096,323 - Xcc-8004.4280.1 0.29 +1.0
4,096,323 - Xcc-8004.4280.1 0.29 -1.5
4,096,414 + Xcc-8004.4280.1 0.39 -1.3
4,096,414 + Xcc-8004.4280.1 0.39 -0.7
4,096,414 + Xcc-8004.4280.1 0.39 -0.7
4,096,415 - Xcc-8004.4280.1 0.39 -0.9
4,096,415 - Xcc-8004.4280.1 0.39 +0.8
4,096,415 - Xcc-8004.4280.1 0.39 +1.1
4,096,415 - Xcc-8004.4280.1 0.39 -1.3
4,096,415 - Xcc-8004.4280.1 0.39 +1.8
4,096,415 - Xcc-8004.4280.1 0.39 -0.1
4,096,557 + Xcc-8004.4280.1 0.55 +0.4
4,096,557 + Xcc-8004.4280.1 0.55 -0.0
4,096,557 + Xcc-8004.4280.1 0.55 +0.3
4,096,557 + Xcc-8004.4280.1 0.55 -0.2
4,096,558 - Xcc-8004.4280.1 0.55 -0.9
4,096,611 + Xcc-8004.4280.1 0.61 +0.7
4,096,719 + Xcc-8004.4280.1 0.73 +2.1
4,096,719 + Xcc-8004.4280.1 0.73 +1.1
4,096,719 + Xcc-8004.4280.1 0.73 -0.8
4,096,719 + Xcc-8004.4280.1 0.73 -0.2
4,096,719 + Xcc-8004.4280.1 0.73 +1.0
4,096,719 + Xcc-8004.4280.1 0.73 -0.6
4,096,719 + Xcc-8004.4280.1 0.73 -1.8
4,096,720 - Xcc-8004.4280.1 0.73 +0.1
4,096,720 - Xcc-8004.4280.1 0.73 -0.0
4,096,720 - Xcc-8004.4280.1 0.73 +1.0
4,096,720 - Xcc-8004.4280.1 0.73 +1.3
4,096,720 - Xcc-8004.4280.1 0.73 -1.5
4,096,720 - Xcc-8004.4280.1 0.73 -0.5
4,096,720 - Xcc-8004.4280.1 0.73 -0.3
4,096,720 - Xcc-8004.4280.1 0.73 -0.4
4,096,720 - Xcc-8004.4280.1 0.73 -0.8
4,096,720 - Xcc-8004.4280.1 0.73 -1.0
4,096,850 - Xcc-8004.4280.1 0.87 -0.4
4,096,951 - +0.3
4,096,967 + +1.5
4,096,967 + -0.3
4,096,967 + +1.1
4,097,001 + +1.2
4,097,001 + -0.8
4,097,001 + -0.4
4,097,001 + -0.7
4,097,001 + -0.2
4,097,002 - Xcc-8004.4281.1 0.10 -0.4
4,097,002 - Xcc-8004.4281.1 0.10 -0.5
4,097,002 - Xcc-8004.4281.1 0.10 -1.0
4,097,002 - Xcc-8004.4281.1 0.10 -0.3
4,097,002 - Xcc-8004.4281.1 0.10 +0.2
4,097,002 - Xcc-8004.4281.1 0.10 +0.1
4,097,124 + Xcc-8004.4281.1 0.45 +0.5
4,097,175 + Xcc-8004.4281.1 0.59 +0.0
4,097,175 + Xcc-8004.4281.1 0.59 -0.2
4,097,293 + -0.6
4,097,293 + +0.6
4,097,293 + +0.9
4,097,294 - -0.8
4,097,294 - -0.1
4,097,294 - -0.5
4,097,294 - -0.8
4,097,294 - -0.6
4,097,294 - -0.2
4,097,294 - -2.5
4,097,294 - +0.8
4,097,320 + -0.3
4,097,321 - +0.2
4,097,321 - -0.8
4,097,476 + Xcc-8004.4282.1 0.20 -0.5
4,097,476 + Xcc-8004.4282.1 0.20 +2.5
4,097,476 + Xcc-8004.4282.1 0.20 -0.1
4,097,476 + Xcc-8004.4282.1 0.20 +0.0
4,097,476 + Xcc-8004.4282.1 0.20 -1.4
4,097,476 + Xcc-8004.4282.1 0.20 -1.1
4,097,476 + Xcc-8004.4282.1 0.20 -0.9
4,097,477 - Xcc-8004.4282.1 0.20 -0.1
4,097,477 - Xcc-8004.4282.1 0.20 -0.6
4,097,477 - Xcc-8004.4282.1 0.20 -1.1
4,097,477 - Xcc-8004.4282.1 0.20 +0.1
4,097,477 - Xcc-8004.4282.1 0.20 -0.3
4,097,477 - Xcc-8004.4282.1 0.20 -0.9
4,097,477 - Xcc-8004.4282.1 0.20 -0.5
4,097,485 + Xcc-8004.4282.1 0.21 -0.4
4,097,485 + Xcc-8004.4282.1 0.21 +0.7
4,097,486 - Xcc-8004.4282.1 0.22 +0.7
4,097,486 - Xcc-8004.4282.1 0.22 +1.4
4,097,486 - Xcc-8004.4282.1 0.22 +1.2
4,097,506 + Xcc-8004.4282.1 0.24 +1.1
4,097,507 - Xcc-8004.4282.1 0.24 -0.6
4,097,507 - Xcc-8004.4282.1 0.24 -1.2
4,097,596 + Xcc-8004.4282.1 0.36 -0.4
4,097,596 + Xcc-8004.4282.1 0.36 +0.0
4,097,597 - Xcc-8004.4282.1 0.36 +0.1
4,097,761 + Xcc-8004.4282.1 0.57 +0.3
4,097,762 - Xcc-8004.4282.1 0.57 +0.2
4,097,762 - Xcc-8004.4282.1 0.57 +1.0
4,097,762 - Xcc-8004.4282.1 0.57 -1.0
4,097,875 + Xcc-8004.4282.1 0.72 +0.0
4,097,875 + Xcc-8004.4282.1 0.72 -1.3
4,097,876 - Xcc-8004.4282.1 0.72 -1.0
4,097,876 - Xcc-8004.4282.1 0.72 -0.8

Or see this region's nucleotide sequence