Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4225.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,050,497	+		Xcc-8004.4224.1	0.33	+0.4
4,050,497	+		Xcc-8004.4224.1	0.33	-0.9
4,050,497	+		Xcc-8004.4224.1	0.33	-0.2
4,050,498	-		Xcc-8004.4224.1	0.33	-0.1
4,050,498	-		Xcc-8004.4224.1	0.33	-1.4
4,050,498	-		Xcc-8004.4224.1	0.33	-0.3
4,051,194	+				+0.6
4,051,194	+				+0.5
4,051,194	+				-0.8
4,051,194	+				+0.4
4,051,194	+				-0.8
4,051,194	+				+0.5
4,051,194	+				-0.9
4,051,194	+				+0.1
4,051,194	+				-0.6
4,051,194	+				+0.7
4,051,195	-				-1.4
4,051,195	-				+0.0
4,051,195	-				-1.1
4,051,195	-				-0.2
4,051,195	-				-1.4
4,051,195	-				-0.2
4,051,195	-				-0.7
4,051,195	-				-1.0
4,051,195	-				+0.0
4,051,195	-				+0.4
4,051,195	-				-0.1
4,051,195	-				-0.6
4,051,195	-				+1.4
4,051,224	-				+0.1
4,051,224	-				-0.2
4,051,607	+		Xcc-8004.4225.1	0.58	-0.4
4,051,607	+		Xcc-8004.4225.1	0.58	+1.4
4,051,608	-		Xcc-8004.4225.1	0.58	-0.6
4,051,796	+				+0.3
4,051,801	+				+1.3
4,051,801	+				+0.0
4,051,801	+				-2.1
4,051,816	+				-0.2
4,051,816	+				-0.3
4,051,922	-				-0.8
4,052,002	+		Xcc-8004.4226.1	0.15	-0.1
4,052,002	+		Xcc-8004.4226.1	0.15	-0.7
4,052,003	-		Xcc-8004.4226.1	0.16	+0.7
4,052,003	-		Xcc-8004.4226.1	0.16	-1.2
4,052,003	-		Xcc-8004.4226.1	0.16	-1.0
4,052,081	+		Xcc-8004.4226.1	0.24	-0.9
4,052,081	+		Xcc-8004.4226.1	0.24	+1.7
4,052,081	+		Xcc-8004.4226.1	0.24	-0.3
4,052,081	+		Xcc-8004.4226.1	0.24	+1.3
4,052,081	+		Xcc-8004.4226.1	0.24	-0.3
4,052,082	-		Xcc-8004.4226.1	0.24	+0.9
4,052,082	-		Xcc-8004.4226.1	0.24	+0.2
4,052,218	+		Xcc-8004.4226.1	0.38	-0.1
4,052,218	+		Xcc-8004.4226.1	0.38	+0.7
4,052,218	+		Xcc-8004.4226.1	0.38	-1.6
4,052,218	+		Xcc-8004.4226.1	0.38	-0.8
4,052,218	+		Xcc-8004.4226.1	0.38	+0.0
4,052,218	+		Xcc-8004.4226.1	0.38	+0.6
4,052,219	-		Xcc-8004.4226.1	0.38	-3.2
4,052,219	-		Xcc-8004.4226.1	0.38	+0.7
4,052,219	-		Xcc-8004.4226.1	0.38	+0.3
4,052,219	-		Xcc-8004.4226.1	0.38	-1.4
4,052,219	-		Xcc-8004.4226.1	0.38	+0.7
4,052,219	-		Xcc-8004.4226.1	0.38	-1.9
4,052,219	-		Xcc-8004.4226.1	0.38	-1.0
4,052,219	-		Xcc-8004.4226.1	0.38	-0.2
4,052,488	+		Xcc-8004.4226.1	0.66	-0.0
4,052,489	-		Xcc-8004.4226.1	0.66	-0.3
4,052,489	-		Xcc-8004.4226.1	0.66	-1.0