Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.417.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.415.1 and Xcc-8004.416.1 are separated by 65 nucleotidesXcc-8004.416.1 and Xcc-8004.417.1 are separated by 218 nucleotidesXcc-8004.417.1 and Xcc-8004.418.1 are separated by 137 nucleotidesXcc-8004.418.1 and Xcc-8004.419.1 are separated by 2 nucleotides Xcc-8004.415.1: Xcc-8004.415.1 - putative; ORF located using Glimmer/Genemark, at 401,192 to 401,983 Xcc-8004.415.1 Xcc-8004.416.1: Xcc-8004.416.1 - AttT protein, at 402,049 to 402,507 Xcc-8004.416.1 Xcc-8004.417.1: Xcc-8004.417.1 - hypothetical protein, at 402,726 to 403,127 Xcc-8004.417.1 Xcc-8004.418.1: Xcc-8004.418.1 - hypothetical protein, at 403,265 to 403,720 Xcc-8004.418.1 Xcc-8004.419.1: Xcc-8004.419.1 - putative; ORF located using Glimmer/Genemark, at 403,723 to 404,553 Xcc-8004.419.1 Position (kb) 402 403 404Strain fitness (log2 ratio) -2 -1 0 1 2at 401.948 kb on + strandat 401.998 kb on + strandat 402.051 kb on - strandat 402.109 kb on - strand, within Xcc-8004.416.1at 402.112 kb on + strand, within Xcc-8004.416.1at 402.112 kb on + strand, within Xcc-8004.416.1at 402.112 kb on + strand, within Xcc-8004.416.1at 402.112 kb on + strand, within Xcc-8004.416.1at 402.112 kb on + strand, within Xcc-8004.416.1at 402.113 kb on - strand, within Xcc-8004.416.1at 402.113 kb on - strand, within Xcc-8004.416.1at 402.160 kb on - strand, within Xcc-8004.416.1at 402.160 kb on - strand, within Xcc-8004.416.1at 402.191 kb on + strand, within Xcc-8004.416.1at 402.192 kb on - strand, within Xcc-8004.416.1at 402.205 kb on + strand, within Xcc-8004.416.1at 402.206 kb on - strand, within Xcc-8004.416.1at 402.217 kb on + strand, within Xcc-8004.416.1at 402.218 kb on - strand, within Xcc-8004.416.1at 402.218 kb on - strand, within Xcc-8004.416.1at 402.221 kb on + strand, within Xcc-8004.416.1at 402.478 kb on + strandat 402.488 kb on + strandat 402.489 kb on - strandat 402.522 kb on - strandat 402.579 kb on + strandat 402.579 kb on + strandat 402.594 kb on + strandat 402.744 kb on + strandat 402.842 kb on + strand, within Xcc-8004.417.1at 402.843 kb on - strand, within Xcc-8004.417.1at 402.845 kb on + strand, within Xcc-8004.417.1at 402.845 kb on + strand, within Xcc-8004.417.1at 402.846 kb on - strand, within Xcc-8004.417.1at 402.846 kb on - strand, within Xcc-8004.417.1at 403.013 kb on + strand, within Xcc-8004.417.1at 403.014 kb on - strand, within Xcc-8004.417.1at 403.110 kb on + strandat 403.221 kb on + strandat 403.221 kb on + strandat 403.251 kb on - strandat 403.258 kb on + strandat 403.259 kb on - strandat 403.259 kb on - strandat 403.260 kb on + strandat 403.260 kb on + strandat 403.261 kb on - strandat 403.373 kb on + strand, within Xcc-8004.418.1at 403.385 kb on + strand, within Xcc-8004.418.1at 403.386 kb on - strand, within Xcc-8004.418.1at 403.386 kb on - strand, within Xcc-8004.418.1at 403.386 kb on - strand, within Xcc-8004.418.1at 403.409 kb on + strand, within Xcc-8004.418.1at 403.409 kb on + strand, within Xcc-8004.418.1at 403.409 kb on + strand, within Xcc-8004.418.1at 403.409 kb on + strand, within Xcc-8004.418.1at 403.410 kb on - strand, within Xcc-8004.418.1at 403.410 kb on - strand, within Xcc-8004.418.1at 403.410 kb on - strand, within Xcc-8004.418.1at 403.413 kb on + strand, within Xcc-8004.418.1at 403.413 kb on + strand, within Xcc-8004.418.1at 403.413 kb on + strand, within Xcc-8004.418.1at 403.414 kb on - strand, within Xcc-8004.418.1at 403.414 kb on - strand, within Xcc-8004.418.1at 403.414 kb on - strand, within Xcc-8004.418.1at 403.417 kb on + strand, within Xcc-8004.418.1at 403.418 kb on - strand, within Xcc-8004.418.1at 403.418 kb on - strand, within Xcc-8004.418.1at 403.462 kb on + strand, within Xcc-8004.418.1at 403.464 kb on + strand, within Xcc-8004.418.1at 403.465 kb on - strand, within Xcc-8004.418.1at 403.465 kb on - strand, within Xcc-8004.418.1at 403.465 kb on - strand, within Xcc-8004.418.1at 403.560 kb on + strand, within Xcc-8004.418.1at 403.582 kb on + strand, within Xcc-8004.418.1at 403.582 kb on + strand, within Xcc-8004.418.1at 403.608 kb on + strand, within Xcc-8004.418.1at 403.609 kb on - strand, within Xcc-8004.418.1at 403.720 kb on + strandat 403.720 kb on + strandat 403.721 kb on - strandat 403.724 kb on + strandat 403.725 kb on - strandat 403.725 kb on - strandat 403.728 kb on - strandat 403.728 kb on - strandat 403.728 kb on - strandat 403.734 kb on + strandat 403.735 kb on - strandat 403.735 kb on - strandat 403.735 kb on - strandat 403.742 kb on + strandat 403.804 kb on + strandat 403.805 kb on - strandat 403.829 kb on + strand, within Xcc-8004.419.1at 403.829 kb on + strand, within Xcc-8004.419.1at 403.911 kb on + strand, within Xcc-8004.419.1at 403.912 kb on - strand, within Xcc-8004.419.1at 403.912 kb on - strand, within Xcc-8004.419.1at 403.990 kb on - strand, within Xcc-8004.419.1at 404.071 kb on + strand, within Xcc-8004.419.1at 404.071 kb on + strand, within Xcc-8004.419.1at 404.071 kb on + strand, within Xcc-8004.419.1at 404.072 kb on - strand, within Xcc-8004.419.1at 404.095 kb on + strand, within Xcc-8004.419.1at 404.096 kb on - strand, within Xcc-8004.419.1at 404.096 kb on - strand, within Xcc-8004.419.1at 404.096 kb on - strand, within Xcc-8004.419.1at 404.096 kb on - strand, within Xcc-8004.419.1at 404.096 kb on - strand, within Xcc-8004.419.1at 404.096 kb on - strand, within Xcc-8004.419.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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401,948 + -1.3
401,998 + -0.5
402,051 - -1.3
402,109 - Xcc-8004.416.1 0.13 -1.4
402,112 + Xcc-8004.416.1 0.14 -1.2
402,112 + Xcc-8004.416.1 0.14 +0.3
402,112 + Xcc-8004.416.1 0.14 -0.3
402,112 + Xcc-8004.416.1 0.14 -0.3
402,112 + Xcc-8004.416.1 0.14 +0.3
402,113 - Xcc-8004.416.1 0.14 +0.3
402,113 - Xcc-8004.416.1 0.14 -0.7
402,160 - Xcc-8004.416.1 0.24 -1.6
402,160 - Xcc-8004.416.1 0.24 -0.2
402,191 + Xcc-8004.416.1 0.31 +0.6
402,192 - Xcc-8004.416.1 0.31 +0.0
402,205 + Xcc-8004.416.1 0.34 +0.5
402,206 - Xcc-8004.416.1 0.34 +0.9
402,217 + Xcc-8004.416.1 0.37 -0.4
402,218 - Xcc-8004.416.1 0.37 +0.3
402,218 - Xcc-8004.416.1 0.37 +1.1
402,221 + Xcc-8004.416.1 0.37 -1.7
402,478 + -0.2
402,488 + -0.8
402,489 - +1.0
402,522 - -0.2
402,579 + -0.2
402,579 + -0.3
402,594 + -1.9
402,744 + -2.4
402,842 + Xcc-8004.417.1 0.29 -0.3
402,843 - Xcc-8004.417.1 0.29 -0.3
402,845 + Xcc-8004.417.1 0.30 -0.5
402,845 + Xcc-8004.417.1 0.30 -0.2
402,846 - Xcc-8004.417.1 0.30 -0.5
402,846 - Xcc-8004.417.1 0.30 -0.4
403,013 + Xcc-8004.417.1 0.71 -0.7
403,014 - Xcc-8004.417.1 0.72 -0.3
403,110 + -0.5
403,221 + +0.8
403,221 + +0.0
403,251 - +0.2
403,258 + -1.6
403,259 - +0.1
403,259 - -1.9
403,260 + -2.7
403,260 + -1.3
403,261 - -0.4
403,373 + Xcc-8004.418.1 0.24 +0.0
403,385 + Xcc-8004.418.1 0.26 +0.1
403,386 - Xcc-8004.418.1 0.27 +2.2
403,386 - Xcc-8004.418.1 0.27 -0.7
403,386 - Xcc-8004.418.1 0.27 -2.7
403,409 + Xcc-8004.418.1 0.32 -0.2
403,409 + Xcc-8004.418.1 0.32 +0.3
403,409 + Xcc-8004.418.1 0.32 -0.8
403,409 + Xcc-8004.418.1 0.32 -1.4
403,410 - Xcc-8004.418.1 0.32 -2.2
403,410 - Xcc-8004.418.1 0.32 +0.8
403,410 - Xcc-8004.418.1 0.32 -0.2
403,413 + Xcc-8004.418.1 0.32 -0.6
403,413 + Xcc-8004.418.1 0.32 +0.1
403,413 + Xcc-8004.418.1 0.32 -0.0
403,414 - Xcc-8004.418.1 0.33 -0.7
403,414 - Xcc-8004.418.1 0.33 -0.1
403,414 - Xcc-8004.418.1 0.33 -1.1
403,417 + Xcc-8004.418.1 0.33 +0.5
403,418 - Xcc-8004.418.1 0.34 -0.9
403,418 - Xcc-8004.418.1 0.34 +0.3
403,462 + Xcc-8004.418.1 0.43 +0.2
403,464 + Xcc-8004.418.1 0.44 -0.0
403,465 - Xcc-8004.418.1 0.44 -2.4
403,465 - Xcc-8004.418.1 0.44 -0.4
403,465 - Xcc-8004.418.1 0.44 -1.1
403,560 + Xcc-8004.418.1 0.65 +1.3
403,582 + Xcc-8004.418.1 0.70 -0.2
403,582 + Xcc-8004.418.1 0.70 +0.3
403,608 + Xcc-8004.418.1 0.75 +1.1
403,609 - Xcc-8004.418.1 0.75 -0.8
403,720 + -1.0
403,720 + -0.6
403,721 - -2.0
403,724 + -0.5
403,725 - -0.2
403,725 - -0.4
403,728 - -1.7
403,728 - +1.2
403,728 - +0.1
403,734 + +0.4
403,735 - +0.4
403,735 - -0.4
403,735 - +0.8
403,742 + -0.2
403,804 + +0.2
403,805 - +0.8
403,829 + Xcc-8004.419.1 0.13 +0.1
403,829 + Xcc-8004.419.1 0.13 +0.3
403,911 + Xcc-8004.419.1 0.23 +1.3
403,912 - Xcc-8004.419.1 0.23 +0.7
403,912 - Xcc-8004.419.1 0.23 -0.3
403,990 - Xcc-8004.419.1 0.32 +1.0
404,071 + Xcc-8004.419.1 0.42 +0.2
404,071 + Xcc-8004.419.1 0.42 -0.9
404,071 + Xcc-8004.419.1 0.42 -0.5
404,072 - Xcc-8004.419.1 0.42 +1.2
404,095 + Xcc-8004.419.1 0.45 +0.8
404,096 - Xcc-8004.419.1 0.45 +1.4
404,096 - Xcc-8004.419.1 0.45 -1.2
404,096 - Xcc-8004.419.1 0.45 -1.2
404,096 - Xcc-8004.419.1 0.45 +0.5
404,096 - Xcc-8004.419.1 0.45 -0.6
404,096 - Xcc-8004.419.1 0.45 +0.1

Or see this region's nucleotide sequence