Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3998.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,874,045	-				+0.2
3,874,047	+				+2.6
3,874,047	+				+0.9
3,874,048	-				+0.3
3,874,048	-				-0.2
3,874,048	-				-0.5
3,874,048	-				+1.8
3,874,048	-				-0.2
3,874,048	-				+0.1
3,874,048	-				+0.6
3,874,048	-				+0.1
3,874,048	-				-1.2
3,874,048	-				+0.4
3,874,074	-				-0.2
3,874,083	+				-0.9
3,874,083	+				+0.4
3,874,084	-				-0.3
3,874,084	-				+0.5
3,874,084	-				-0.7
3,874,203	+				-0.1
3,874,203	+				+0.6
3,874,204	-				+0.6
3,874,204	-				+0.3
3,874,204	-				+0.2
3,874,204	-				-0.1
3,874,204	-				+0.5
3,874,278	+				+1.3
3,874,279	-				-1.6
3,874,279	-				-0.1
3,874,358	+				+0.7
3,874,359	-				+0.1
3,874,428	+				-0.1
3,874,428	+				-0.2
3,874,429	-				+0.2
3,874,429	-				+0.5
3,874,429	-				+0.4
3,874,492	+				-0.6
3,874,492	+				+0.3
3,875,682	-				+0.6
3,875,682	-				+0.5
3,875,682	-				+0.7
3,875,682	-				+0.5
3,876,210	-		Xcc-8004.4000.1	0.38	-0.9
3,876,348	-		Xcc-8004.4000.1	0.65	+0.1
3,876,348	-		Xcc-8004.4000.1	0.65	+0.1
3,876,348	-		Xcc-8004.4000.1	0.65	+1.3
3,876,390	-		Xcc-8004.4000.1	0.73	+2.1
3,876,446	-		Xcc-8004.4000.1	0.84	+0.1
3,876,446	-		Xcc-8004.4000.1	0.84	-0.4
3,876,446	-		Xcc-8004.4000.1	0.84	-0.3
3,876,526	-				+0.0
3,876,526	-				+3.1
3,876,526	-				-1.0
3,876,526	-				+0.6
3,876,526	-				-1.0
3,876,526	-				-0.6
3,876,526	-				-0.0