Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3828.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,704,720	-				-0.2
3,704,720	-				+1.9
3,704,720	-				+0.8
3,704,770	-				-0.4
3,704,841	-				-0.4
3,704,841	-				+0.3
3,704,878	-				-1.0
3,705,539	-				+0.3
3,705,539	-				+0.6
3,705,547	-				+0.4
3,705,671	+				+0.5
3,705,671	+				+1.4
3,705,671	+				-1.3
3,705,671	+				-0.4
3,705,672	-				+0.3
3,705,903	+				-1.3
3,705,903	+				-0.3
3,705,903	+				+0.2
3,705,903	+				-0.5
3,705,903	+				-0.1
3,705,903	+				-1.0
3,705,903	+				-0.5
3,705,903	+				-0.6
3,705,903	+				-0.2
3,705,903	+				+0.2
3,705,903	+				-0.7
3,705,904	-				+1.1
3,705,904	-				-0.8
3,705,904	-				+2.3
3,705,904	-				-0.4
3,705,904	-				+0.2
3,705,904	-				-1.3
3,705,904	-				-0.3
3,705,904	-				+1.1
3,705,904	-				+0.5
3,705,904	-				+1.1
3,705,924	+				-0.5
3,706,080	+		Xcc-8004.3830.1	0.14	+2.5
3,706,080	+		Xcc-8004.3830.1	0.14	-0.3
3,706,080	+		Xcc-8004.3830.1	0.14	-1.4
3,706,080	+		Xcc-8004.3830.1	0.14	+0.6
3,706,080	+		Xcc-8004.3830.1	0.14	-0.8
3,706,080	+		Xcc-8004.3830.1	0.14	-0.6
3,706,081	-		Xcc-8004.3830.1	0.14	+2.1
3,706,081	-		Xcc-8004.3830.1	0.14	-1.2
3,706,081	-		Xcc-8004.3830.1	0.14	-0.9
3,706,086	+		Xcc-8004.3830.1	0.14	+0.2
3,706,087	-		Xcc-8004.3830.1	0.14	+1.5
3,706,101	+		Xcc-8004.3830.1	0.14	-0.9
3,706,101	+		Xcc-8004.3830.1	0.14	-1.5
3,706,102	-		Xcc-8004.3830.1	0.14	+0.6