Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3622.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,506,890	+		Xcc-8004.3620.1	0.38	-0.3
3,506,890	+		Xcc-8004.3620.1	0.38	-1.2
3,506,891	-		Xcc-8004.3620.1	0.39	-0.6
3,506,897	-		Xcc-8004.3620.1	0.40	-1.0
3,506,897	-		Xcc-8004.3620.1	0.40	-0.5
3,506,897	-		Xcc-8004.3620.1	0.40	-2.1
3,506,932	+		Xcc-8004.3620.1	0.48	+1.4
3,506,933	-		Xcc-8004.3620.1	0.48	-1.3
3,506,933	-		Xcc-8004.3620.1	0.48	-0.7
3,507,097	+		Xcc-8004.3620.1	0.84	+1.3
3,507,097	+		Xcc-8004.3620.1	0.84	+2.7
3,507,143	+				-1.5
3,507,144	-				-1.2
3,507,170	+				-0.5
3,507,170	+				-0.6
3,507,170	+				-2.8
3,507,170	+				-0.1
3,507,170	+				-1.6
3,507,170	+				-0.1
3,507,170	+				-0.6
3,507,170	+				+0.2
3,507,170	+				+1.1
3,507,170	+				-2.4
3,507,170	+				+1.2
3,507,171	-				-0.6
3,507,171	-				+1.2
3,507,171	-				+2.5
3,507,171	-				+0.0
3,507,171	-				-1.8
3,507,171	-				-0.5
3,507,171	-				-0.2
3,507,171	-				+0.7
3,507,171	-				+0.5
3,507,171	-				+1.6
3,507,171	-				+1.1
3,507,171	-				-1.4
3,507,171	-				-0.6
3,507,171	-				-0.3
3,507,217	-				+0.3
3,507,217	-				+0.0
3,507,217	-				+0.3
3,507,217	-				+1.7
3,507,310	-				-1.4
3,507,310	-				-1.1
3,507,654	+				+0.1
3,507,654	+				-0.3
3,507,654	+				+1.6
3,507,654	+				-0.5
3,507,654	+				+0.2
3,507,654	+				-1.0
3,507,655	-				+0.2
3,507,655	-				+0.0
3,507,655	-				-0.4
3,507,655	-				-0.2
3,507,712	-				+0.2
3,507,712	-				-0.7
3,507,712	-				+0.9
3,507,720	+				-0.6
3,507,720	+				-0.0
3,507,721	-				-0.5
3,507,721	-				-1.2
3,507,721	-				+0.4
3,507,730	-				+0.4
3,507,753	+				-1.9
3,507,753	+				+1.3
3,507,754	-				-0.4
3,507,763	+				-0.1
3,507,763	+				+0.5
3,507,764	-				+1.5
3,507,764	-				+0.1
3,507,764	-				-0.1
3,507,764	-				-0.6
3,507,766	+				-2.4
3,507,766	+				+0.6
3,507,767	-				+0.7
3,507,767	-				-0.9
3,507,767	-				-0.6
3,507,767	-				-0.3
3,507,767	-				-0.6
3,507,767	-				+0.1
3,507,767	-				+1.2
3,507,767	-				+2.1
3,507,818	-				-0.2
3,507,818	-				-0.9
3,507,857	-				-0.9
3,507,857	-				-1.5
3,508,264	+		Xcc-8004.3622.1	0.39	+0.2
3,508,264	+		Xcc-8004.3622.1	0.39	-0.4
3,508,264	+		Xcc-8004.3622.1	0.39	+3.1
3,508,264	+		Xcc-8004.3622.1	0.39	-1.9
3,508,264	+		Xcc-8004.3622.1	0.39	+0.1
3,508,265	-		Xcc-8004.3622.1	0.39	+0.0
3,508,265	-		Xcc-8004.3622.1	0.39	-0.1
3,508,448	-		Xcc-8004.3622.1	0.54	+3.1
3,508,603	+		Xcc-8004.3622.1	0.66	-0.5
3,508,604	-		Xcc-8004.3622.1	0.66	-0.2
3,508,604	-		Xcc-8004.3622.1	0.66	-0.5
3,508,654	+		Xcc-8004.3622.1	0.70	-0.5
3,508,654	+		Xcc-8004.3622.1	0.70	-0.4
3,508,654	+		Xcc-8004.3622.1	0.70	+0.3
3,508,654	+		Xcc-8004.3622.1	0.70	+0.2
3,508,655	-		Xcc-8004.3622.1	0.70	-0.5
3,508,655	-		Xcc-8004.3622.1	0.70	-0.0
3,508,693	+		Xcc-8004.3622.1	0.73	-0.4
3,508,693	+		Xcc-8004.3622.1	0.73	+0.8
3,508,693	+		Xcc-8004.3622.1	0.73	-0.4
3,508,693	+		Xcc-8004.3622.1	0.73	-0.0
3,508,693	+		Xcc-8004.3622.1	0.73	+0.6
3,508,693	+		Xcc-8004.3622.1	0.73	-1.1
3,508,693	+		Xcc-8004.3622.1	0.73	+0.1
3,508,694	-		Xcc-8004.3622.1	0.73	-1.6
3,508,694	-		Xcc-8004.3622.1	0.73	-0.1
3,508,694	-		Xcc-8004.3622.1	0.73	+0.6
3,508,694	-		Xcc-8004.3622.1	0.73	+0.2
3,508,786	+		Xcc-8004.3622.1	0.80	+0.9
3,508,786	+		Xcc-8004.3622.1	0.80	-0.0
3,508,924	+				-0.8
3,508,924	+				-0.3
3,508,924	+				-0.5
3,508,925	-				-0.5
3,508,925	-				+0.5
3,509,091	+				+0.5
3,509,091	+				-0.7
3,509,091	+				-1.1
3,509,092	-				+1.0
3,509,161	+				-0.8
3,509,161	+				-0.3
3,509,161	+				-0.6
3,509,161	+				+0.1
3,509,161	+				+0.3
3,509,161	+				+0.9
3,509,162	-				-1.2
3,509,162	-				-0.8
3,509,162	-				+0.4
3,509,162	-				+1.8
3,509,162	-				+0.6
3,509,162	-				-1.0
3,509,162	-				-0.2
3,509,162	-				+4.1
3,509,185	+				-1.7
3,509,185	+				-1.8
3,509,186	-				-0.2
3,509,186	-				+0.8
3,509,355	+		Xcc-8004.3623.1	0.13	-0.4
3,509,355	+		Xcc-8004.3623.1	0.13	-0.9
3,509,356	-		Xcc-8004.3623.1	0.13	+0.3
3,509,358	+		Xcc-8004.3623.1	0.13	-0.1
3,509,358	+		Xcc-8004.3623.1	0.13	-0.1
3,509,358	+		Xcc-8004.3623.1	0.13	-0.3
3,509,358	+		Xcc-8004.3623.1	0.13	-0.2
3,509,358	+		Xcc-8004.3623.1	0.13	+0.2
3,509,358	+		Xcc-8004.3623.1	0.13	+0.3
3,509,359	-		Xcc-8004.3623.1	0.13	+1.1
3,509,359	-		Xcc-8004.3623.1	0.13	-0.6
3,509,359	-		Xcc-8004.3623.1	0.13	+0.7
3,509,359	-		Xcc-8004.3623.1	0.13	+0.4
3,509,359	-		Xcc-8004.3623.1	0.13	-2.3
3,509,359	-		Xcc-8004.3623.1	0.13	+0.4
3,509,427	+		Xcc-8004.3623.1	0.19	-1.2
3,509,428	-		Xcc-8004.3623.1	0.19	-0.1
3,509,591	+		Xcc-8004.3623.1	0.34	+0.2
3,509,697	+		Xcc-8004.3623.1	0.44	+0.8
3,509,698	-		Xcc-8004.3623.1	0.44	+0.6
3,509,818	-		Xcc-8004.3623.1	0.55	-0.3
3,509,931	+		Xcc-8004.3623.1	0.65	-0.4
3,509,931	+		Xcc-8004.3623.1	0.65	+0.5
3,509,931	+		Xcc-8004.3623.1	0.65	+0.9
3,509,931	+		Xcc-8004.3623.1	0.65	-0.8
3,509,932	-		Xcc-8004.3623.1	0.65	+0.7
3,509,932	-		Xcc-8004.3623.1	0.65	-0.1
3,509,932	-		Xcc-8004.3623.1	0.65	+0.6
3,509,932	-		Xcc-8004.3623.1	0.65	-0.4
3,509,932	-		Xcc-8004.3623.1	0.65	+0.2
3,509,932	-		Xcc-8004.3623.1	0.65	+0.4
3,509,932	-		Xcc-8004.3623.1	0.65	+0.8
3,509,932	-		Xcc-8004.3623.1	0.65	-1.9
3,509,932	-		Xcc-8004.3623.1	0.65	-0.5