Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3617.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,504,675	+				+0.4
3,504,676	-				-1.0
3,504,692	+				+0.9
3,504,692	+				-0.8
3,504,693	-				-1.6
3,504,693	-				+0.6
3,504,795	+				+2.2
3,505,118	+		Xcc-8004.3616.1	0.26	+0.3
3,505,142	+		Xcc-8004.3616.1	0.30	-1.3
3,505,142	+		Xcc-8004.3616.1	0.30	-1.0
3,505,143	-		Xcc-8004.3616.1	0.30	+0.8
3,505,143	-		Xcc-8004.3616.1	0.30	-0.6
3,505,314	+		Xcc-8004.3616.1	0.58	+0.9
3,505,315	-		Xcc-8004.3616.1	0.58	-0.3
3,505,315	-		Xcc-8004.3616.1	0.58	+0.6
3,505,315	-		Xcc-8004.3616.1	0.58	+1.0
3,505,315	-		Xcc-8004.3616.1	0.58	-1.2
3,505,370	+		Xcc-8004.3616.1	0.67	-1.4
3,505,370	+		Xcc-8004.3616.1	0.67	+0.7
3,505,371	-		Xcc-8004.3616.1	0.67	-0.1
3,505,371	-		Xcc-8004.3616.1	0.67	+0.3
3,505,371	-		Xcc-8004.3616.1	0.67	+1.2
3,505,371	-		Xcc-8004.3616.1	0.67	-0.9
3,505,371	-		Xcc-8004.3616.1	0.67	-0.4
3,505,371	-		Xcc-8004.3616.1	0.67	-0.2
3,505,448	+		Xcc-8004.3616.1	0.80	-0.4
3,505,449	-		Xcc-8004.3616.1	0.80	-0.2
3,505,449	-		Xcc-8004.3616.1	0.80	-0.6
3,505,449	-		Xcc-8004.3616.1	0.80	-0.2
3,505,487	+		Xcc-8004.3616.1	0.87	-0.8
3,505,508	+				+0.8
3,505,508	+				+0.7
3,505,508	+				-0.6
3,505,508	+				+1.5
3,505,509	-				-0.0
3,505,509	-				+0.6
3,505,509	-				-0.2
3,505,509	-				+0.1
3,505,611	+				-0.7
3,505,612	-				-2.1
3,505,729	+		Xcc-8004.3617.1	0.21	+0.0
3,505,730	-		Xcc-8004.3617.1	0.21	+0.3
3,505,753	+		Xcc-8004.3617.1	0.25	-0.7
3,505,753	+		Xcc-8004.3617.1	0.25	-0.3
3,505,753	+		Xcc-8004.3617.1	0.25	+0.6
3,505,753	+		Xcc-8004.3617.1	0.25	+0.4
3,505,754	-		Xcc-8004.3617.1	0.25	-0.6
3,505,754	-		Xcc-8004.3617.1	0.25	-0.7
3,505,754	-		Xcc-8004.3617.1	0.25	+0.8
3,505,754	-		Xcc-8004.3617.1	0.25	-0.9
3,505,827	+		Xcc-8004.3617.1	0.37	+0.2
3,505,827	+		Xcc-8004.3617.1	0.37	+0.8
3,505,828	-		Xcc-8004.3617.1	0.37	+1.8
3,506,185	+				+0.4
3,506,185	+				+0.3
3,506,185	+				+0.7
3,506,186	-				+1.1
3,506,186	-				-0.2
3,506,186	-				-0.7
3,506,259	+				-0.2
3,506,259	+				-0.7
3,506,260	-				+0.5
3,506,306	+				-0.3
3,506,306	+				-0.8
3,506,306	+				+0.2
3,506,363	+				+0.8
3,506,363	+				+0.1
3,506,363	+				+1.0
3,506,380	+				+0.1
3,506,380	+				+1.7
3,506,380	+				-1.8
3,506,381	-				+0.6
3,506,381	-				+0.4
3,506,381	-				+0.7
3,506,381	-				-1.2
3,506,381	-				-1.1
3,506,411	+				+0.9
3,506,445	+		Xcc-8004.3619.1	0.24	-1.5
3,506,446	-		Xcc-8004.3619.1	0.25	+0.3
3,506,446	-		Xcc-8004.3619.1	0.25	-0.2
3,506,446	-		Xcc-8004.3619.1	0.25	-0.8
3,506,463	+		Xcc-8004.3619.1	0.33	-0.9
3,506,463	+		Xcc-8004.3619.1	0.33	-0.8
3,506,464	-		Xcc-8004.3619.1	0.33	-0.6
3,506,473	+		Xcc-8004.3619.1	0.38	-1.7
3,506,473	+		Xcc-8004.3619.1	0.38	-0.0
3,506,473	+		Xcc-8004.3619.1	0.38	-1.2
3,506,474	-		Xcc-8004.3619.1	0.38	-0.1
3,506,474	-		Xcc-8004.3619.1	0.38	-1.8
3,506,474	-		Xcc-8004.3619.1	0.38	+0.1
3,506,542	-		Xcc-8004.3619.1	0.70	-0.4
3,506,548	+		Xcc-8004.3619.1	0.73	+0.6
3,506,549	-		Xcc-8004.3619.1	0.73	+0.2
3,506,549	-		Xcc-8004.3619.1	0.73	+0.2
3,506,590	+				+0.1
3,506,590	+				-0.5
3,506,590	+				-0.8
3,506,590	+				-0.2
3,506,590	+				+0.4
3,506,590	+				+1.1
3,506,590	+				-0.8
3,506,590	+				+1.0
3,506,590	+				+1.6
3,506,591	-				+0.6
3,506,591	-				-0.2
3,506,591	-				+0.6
3,506,591	-				-0.2
3,506,591	-				+0.8
3,506,594	-				-0.4
3,506,601	+				-0.3
3,506,602	-				+0.7
3,506,669	-				+0.6
3,506,713	+				+0.5
3,506,713	+				+2.2
3,506,716	+				+2.7
3,506,716	+				+0.5
3,506,716	+				+1.7
3,506,717	-				+0.2
3,506,890	+		Xcc-8004.3620.1	0.38	-0.3
3,506,890	+		Xcc-8004.3620.1	0.38	-1.2
3,506,891	-		Xcc-8004.3620.1	0.39	-0.6
3,506,897	-		Xcc-8004.3620.1	0.40	-1.0
3,506,897	-		Xcc-8004.3620.1	0.40	-0.5
3,506,897	-		Xcc-8004.3620.1	0.40	-2.1
3,506,932	+		Xcc-8004.3620.1	0.48	+1.4
3,506,933	-		Xcc-8004.3620.1	0.48	-1.3
3,506,933	-		Xcc-8004.3620.1	0.48	-0.7
3,507,097	+		Xcc-8004.3620.1	0.84	+1.3
3,507,097	+		Xcc-8004.3620.1	0.84	+2.7
3,507,143	+				-1.5
3,507,144	-				-1.2
3,507,170	+				-0.5
3,507,170	+				-0.6
3,507,170	+				-2.8
3,507,170	+				-0.1
3,507,170	+				-1.6
3,507,170	+				-0.1
3,507,170	+				-0.6
3,507,170	+				+0.2
3,507,170	+				+1.1
3,507,170	+				-2.4
3,507,170	+				+1.2
3,507,171	-				-0.6
3,507,171	-				+1.2
3,507,171	-				+2.5
3,507,171	-				+0.0
3,507,171	-				-1.8
3,507,171	-				-0.5
3,507,171	-				-0.2
3,507,171	-				+0.7
3,507,171	-				+0.5
3,507,171	-				+1.6
3,507,171	-				+1.1
3,507,171	-				-1.4
3,507,171	-				-0.6
3,507,171	-				-0.3