Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3616.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3615.1 and Xcc-8004.3616.1 are separated by 431 nucleotidesXcc-8004.3616.1 and Xcc-8004.3617.1 are separated by 35 nucleotidesXcc-8004.3617.1 and Xcc-8004.3619.1 are separated by 188 nucleotides Xcc-8004.3615.1: Xcc-8004.3615.1 - Virulence protein, at 3,503,159 to 3,504,532 Xcc-8004.3615.1 Xcc-8004.3616.1: Xcc-8004.3616.1 - FIG01209707: hypothetical protein, at 3,504,964 to 3,505,566 Xcc-8004.3616.1 Xcc-8004.3617.1: Xcc-8004.3617.1 - FIG01209673: hypothetical protein, at 3,505,602 to 3,506,204 Xcc-8004.3617.1 Xcc-8004.3619.1: Xcc-8004.3619.1 - hypothetical protein, at 3,506,393 to 3,506,605 Xcc-8004.3619.1 Position (kb) 3504 3505 3506Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3504.130 kb on - strand, within Xcc-8004.3615.1at 3504.130 kb on - strand, within Xcc-8004.3615.1at 3504.178 kb on - strand, within Xcc-8004.3615.1at 3504.178 kb on - strand, within Xcc-8004.3615.1at 3504.178 kb on - strand, within Xcc-8004.3615.1at 3504.192 kb on + strand, within Xcc-8004.3615.1at 3504.192 kb on + strand, within Xcc-8004.3615.1at 3504.192 kb on + strand, within Xcc-8004.3615.1at 3504.192 kb on + strand, within Xcc-8004.3615.1at 3504.192 kb on + strand, within Xcc-8004.3615.1at 3504.192 kb on + strand, within Xcc-8004.3615.1at 3504.192 kb on + strand, within Xcc-8004.3615.1at 3504.192 kb on + strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.193 kb on - strand, within Xcc-8004.3615.1at 3504.208 kb on - strand, within Xcc-8004.3615.1at 3504.276 kb on + strand, within Xcc-8004.3615.1at 3504.276 kb on + strand, within Xcc-8004.3615.1at 3504.276 kb on + strand, within Xcc-8004.3615.1at 3504.276 kb on + strand, within Xcc-8004.3615.1at 3504.277 kb on - strand, within Xcc-8004.3615.1at 3504.277 kb on - strand, within Xcc-8004.3615.1at 3504.355 kb on + strand, within Xcc-8004.3615.1at 3504.563 kb on + strandat 3504.564 kb on - strandat 3504.564 kb on - strandat 3504.675 kb on + strandat 3504.676 kb on - strandat 3504.692 kb on + strandat 3504.692 kb on + strandat 3504.693 kb on - strandat 3504.693 kb on - strandat 3504.795 kb on + strandat 3505.118 kb on + strand, within Xcc-8004.3616.1at 3505.142 kb on + strand, within Xcc-8004.3616.1at 3505.142 kb on + strand, within Xcc-8004.3616.1at 3505.143 kb on - strand, within Xcc-8004.3616.1at 3505.143 kb on - strand, within Xcc-8004.3616.1at 3505.314 kb on + strand, within Xcc-8004.3616.1at 3505.315 kb on - strand, within Xcc-8004.3616.1at 3505.315 kb on - strand, within Xcc-8004.3616.1at 3505.315 kb on - strand, within Xcc-8004.3616.1at 3505.315 kb on - strand, within Xcc-8004.3616.1at 3505.370 kb on + strand, within Xcc-8004.3616.1at 3505.370 kb on + strand, within Xcc-8004.3616.1at 3505.371 kb on - strand, within Xcc-8004.3616.1at 3505.371 kb on - strand, within Xcc-8004.3616.1at 3505.371 kb on - strand, within Xcc-8004.3616.1at 3505.371 kb on - strand, within Xcc-8004.3616.1at 3505.371 kb on - strand, within Xcc-8004.3616.1at 3505.371 kb on - strand, within Xcc-8004.3616.1at 3505.448 kb on + strand, within Xcc-8004.3616.1at 3505.449 kb on - strand, within Xcc-8004.3616.1at 3505.449 kb on - strand, within Xcc-8004.3616.1at 3505.449 kb on - strand, within Xcc-8004.3616.1at 3505.487 kb on + strand, within Xcc-8004.3616.1at 3505.508 kb on + strandat 3505.508 kb on + strandat 3505.508 kb on + strandat 3505.508 kb on + strandat 3505.509 kb on - strandat 3505.509 kb on - strandat 3505.509 kb on - strandat 3505.509 kb on - strandat 3505.611 kb on + strandat 3505.612 kb on - strandat 3505.729 kb on + strand, within Xcc-8004.3617.1at 3505.730 kb on - strand, within Xcc-8004.3617.1at 3505.753 kb on + strand, within Xcc-8004.3617.1at 3505.753 kb on + strand, within Xcc-8004.3617.1at 3505.753 kb on + strand, within Xcc-8004.3617.1at 3505.753 kb on + strand, within Xcc-8004.3617.1at 3505.754 kb on - strand, within Xcc-8004.3617.1at 3505.754 kb on - strand, within Xcc-8004.3617.1at 3505.754 kb on - strand, within Xcc-8004.3617.1at 3505.754 kb on - strand, within Xcc-8004.3617.1at 3505.827 kb on + strand, within Xcc-8004.3617.1at 3505.827 kb on + strand, within Xcc-8004.3617.1at 3505.828 kb on - strand, within Xcc-8004.3617.1at 3506.185 kb on + strandat 3506.185 kb on + strandat 3506.185 kb on + strandat 3506.186 kb on - strandat 3506.186 kb on - strandat 3506.186 kb on - strandat 3506.259 kb on + strandat 3506.259 kb on + strandat 3506.260 kb on - strandat 3506.306 kb on + strandat 3506.306 kb on + strandat 3506.306 kb on + strandat 3506.363 kb on + strandat 3506.363 kb on + strandat 3506.363 kb on + strandat 3506.380 kb on + strandat 3506.380 kb on + strandat 3506.380 kb on + strandat 3506.381 kb on - strandat 3506.381 kb on - strandat 3506.381 kb on - strandat 3506.381 kb on - strandat 3506.381 kb on - strandat 3506.411 kb on + strandat 3506.445 kb on + strand, within Xcc-8004.3619.1at 3506.446 kb on - strand, within Xcc-8004.3619.1at 3506.446 kb on - strand, within Xcc-8004.3619.1at 3506.446 kb on - strand, within Xcc-8004.3619.1at 3506.463 kb on + strand, within Xcc-8004.3619.1at 3506.463 kb on + strand, within Xcc-8004.3619.1at 3506.464 kb on - strand, within Xcc-8004.3619.1at 3506.473 kb on + strand, within Xcc-8004.3619.1at 3506.473 kb on + strand, within Xcc-8004.3619.1at 3506.473 kb on + strand, within Xcc-8004.3619.1at 3506.474 kb on - strand, within Xcc-8004.3619.1at 3506.474 kb on - strand, within Xcc-8004.3619.1at 3506.474 kb on - strand, within Xcc-8004.3619.1at 3506.542 kb on - strand, within Xcc-8004.3619.1at 3506.548 kb on + strand, within Xcc-8004.3619.1at 3506.549 kb on - strand, within Xcc-8004.3619.1at 3506.549 kb on - strand, within Xcc-8004.3619.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,504,130 - Xcc-8004.3615.1 0.71 -0.6
3,504,130 - Xcc-8004.3615.1 0.71 -2.0
3,504,178 - Xcc-8004.3615.1 0.74 -2.0
3,504,178 - Xcc-8004.3615.1 0.74 -1.5
3,504,178 - Xcc-8004.3615.1 0.74 -1.6
3,504,192 + Xcc-8004.3615.1 0.75 -1.0
3,504,192 + Xcc-8004.3615.1 0.75 -3.0
3,504,192 + Xcc-8004.3615.1 0.75 -1.4
3,504,192 + Xcc-8004.3615.1 0.75 -2.4
3,504,192 + Xcc-8004.3615.1 0.75 -1.3
3,504,192 + Xcc-8004.3615.1 0.75 -2.5
3,504,192 + Xcc-8004.3615.1 0.75 +0.6
3,504,192 + Xcc-8004.3615.1 0.75 -4.0
3,504,193 - Xcc-8004.3615.1 0.75 -0.4
3,504,193 - Xcc-8004.3615.1 0.75 -1.9
3,504,193 - Xcc-8004.3615.1 0.75 -0.4
3,504,193 - Xcc-8004.3615.1 0.75 -0.7
3,504,193 - Xcc-8004.3615.1 0.75 -1.0
3,504,193 - Xcc-8004.3615.1 0.75 -1.4
3,504,193 - Xcc-8004.3615.1 0.75 -2.2
3,504,193 - Xcc-8004.3615.1 0.75 -1.7
3,504,193 - Xcc-8004.3615.1 0.75 -2.4
3,504,193 - Xcc-8004.3615.1 0.75 -1.3
3,504,193 - Xcc-8004.3615.1 0.75 -2.9
3,504,193 - Xcc-8004.3615.1 0.75 -1.9
3,504,193 - Xcc-8004.3615.1 0.75 -0.8
3,504,193 - Xcc-8004.3615.1 0.75 -1.7
3,504,208 - Xcc-8004.3615.1 0.76 -0.8
3,504,276 + Xcc-8004.3615.1 0.81 -0.9
3,504,276 + Xcc-8004.3615.1 0.81 -2.2
3,504,276 + Xcc-8004.3615.1 0.81 -2.1
3,504,276 + Xcc-8004.3615.1 0.81 -1.1
3,504,277 - Xcc-8004.3615.1 0.81 -1.2
3,504,277 - Xcc-8004.3615.1 0.81 -1.5
3,504,355 + Xcc-8004.3615.1 0.87 -1.3
3,504,563 + -0.4
3,504,564 - -0.5
3,504,564 - +1.3
3,504,675 + +0.4
3,504,676 - -1.0
3,504,692 + +0.9
3,504,692 + -0.8
3,504,693 - -1.6
3,504,693 - +0.6
3,504,795 + +2.2
3,505,118 + Xcc-8004.3616.1 0.26 +0.3
3,505,142 + Xcc-8004.3616.1 0.30 -1.3
3,505,142 + Xcc-8004.3616.1 0.30 -1.0
3,505,143 - Xcc-8004.3616.1 0.30 +0.8
3,505,143 - Xcc-8004.3616.1 0.30 -0.6
3,505,314 + Xcc-8004.3616.1 0.58 +0.9
3,505,315 - Xcc-8004.3616.1 0.58 -0.3
3,505,315 - Xcc-8004.3616.1 0.58 +0.6
3,505,315 - Xcc-8004.3616.1 0.58 +1.0
3,505,315 - Xcc-8004.3616.1 0.58 -1.2
3,505,370 + Xcc-8004.3616.1 0.67 -1.4
3,505,370 + Xcc-8004.3616.1 0.67 +0.7
3,505,371 - Xcc-8004.3616.1 0.67 -0.1
3,505,371 - Xcc-8004.3616.1 0.67 +0.3
3,505,371 - Xcc-8004.3616.1 0.67 +1.2
3,505,371 - Xcc-8004.3616.1 0.67 -0.9
3,505,371 - Xcc-8004.3616.1 0.67 -0.4
3,505,371 - Xcc-8004.3616.1 0.67 -0.2
3,505,448 + Xcc-8004.3616.1 0.80 -0.4
3,505,449 - Xcc-8004.3616.1 0.80 -0.2
3,505,449 - Xcc-8004.3616.1 0.80 -0.6
3,505,449 - Xcc-8004.3616.1 0.80 -0.2
3,505,487 + Xcc-8004.3616.1 0.87 -0.8
3,505,508 + +0.8
3,505,508 + +0.7
3,505,508 + -0.6
3,505,508 + +1.5
3,505,509 - -0.0
3,505,509 - +0.6
3,505,509 - -0.2
3,505,509 - +0.1
3,505,611 + -0.7
3,505,612 - -2.1
3,505,729 + Xcc-8004.3617.1 0.21 +0.0
3,505,730 - Xcc-8004.3617.1 0.21 +0.3
3,505,753 + Xcc-8004.3617.1 0.25 -0.7
3,505,753 + Xcc-8004.3617.1 0.25 -0.3
3,505,753 + Xcc-8004.3617.1 0.25 +0.6
3,505,753 + Xcc-8004.3617.1 0.25 +0.4
3,505,754 - Xcc-8004.3617.1 0.25 -0.6
3,505,754 - Xcc-8004.3617.1 0.25 -0.7
3,505,754 - Xcc-8004.3617.1 0.25 +0.8
3,505,754 - Xcc-8004.3617.1 0.25 -0.9
3,505,827 + Xcc-8004.3617.1 0.37 +0.2
3,505,827 + Xcc-8004.3617.1 0.37 +0.8
3,505,828 - Xcc-8004.3617.1 0.37 +1.8
3,506,185 + +0.4
3,506,185 + +0.3
3,506,185 + +0.7
3,506,186 - +1.1
3,506,186 - -0.2
3,506,186 - -0.7
3,506,259 + -0.2
3,506,259 + -0.7
3,506,260 - +0.5
3,506,306 + -0.3
3,506,306 + -0.8
3,506,306 + +0.2
3,506,363 + +0.8
3,506,363 + +0.1
3,506,363 + +1.0
3,506,380 + +0.1
3,506,380 + +1.7
3,506,380 + -1.8
3,506,381 - +0.6
3,506,381 - +0.4
3,506,381 - +0.7
3,506,381 - -1.2
3,506,381 - -1.1
3,506,411 + +0.9
3,506,445 + Xcc-8004.3619.1 0.24 -1.5
3,506,446 - Xcc-8004.3619.1 0.25 +0.3
3,506,446 - Xcc-8004.3619.1 0.25 -0.2
3,506,446 - Xcc-8004.3619.1 0.25 -0.8
3,506,463 + Xcc-8004.3619.1 0.33 -0.9
3,506,463 + Xcc-8004.3619.1 0.33 -0.8
3,506,464 - Xcc-8004.3619.1 0.33 -0.6
3,506,473 + Xcc-8004.3619.1 0.38 -1.7
3,506,473 + Xcc-8004.3619.1 0.38 -0.0
3,506,473 + Xcc-8004.3619.1 0.38 -1.2
3,506,474 - Xcc-8004.3619.1 0.38 -0.1
3,506,474 - Xcc-8004.3619.1 0.38 -1.8
3,506,474 - Xcc-8004.3619.1 0.38 +0.1
3,506,542 - Xcc-8004.3619.1 0.70 -0.4
3,506,548 + Xcc-8004.3619.1 0.73 +0.6
3,506,549 - Xcc-8004.3619.1 0.73 +0.2
3,506,549 - Xcc-8004.3619.1 0.73 +0.2

Or see this region's nucleotide sequence