Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3436.1 and Xcc-8004.3437.1 are separated by 60 nucleotides Xcc-8004.3437.1 and Xcc-8004.3438.1 are separated by 224 nucleotides Xcc-8004.3438.1 and Xcc-8004.3442.1 are separated by 763 nucleotides
Xcc-8004.3436.1: Xcc-8004.3436.1 - hypothetical protein, at 3,327,147 to 3,327,578
Xcc-8004.3436.1
Xcc-8004.3437.1: Xcc-8004.3437.1 - tmRNA-binding protein SmpB, at 3,327,639 to 3,328,142
Xcc-8004.3437.1
Xcc-8004.3438.1: Xcc-8004.3438.1 - Serine peptidase, at 3,328,367 to 3,330,826
Xcc-8004.3438.1
Xcc-8004.3442.1: Xcc-8004.3442.1 - putative; ORF located using Glimmer/Genemark, at 3,331,590 to 3,331,829
Xcc-8004.3442.1
Xcc-8004.3443.1: Xcc-8004.3443.1 - hypothetical protein, at 3,331,826 to 3,332,650
Xcc-8004.3443.1
Position (kb) 3328
3329
3330
3331 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3327.572 kb on + strand at 3327.572 kb on + strand at 3327.572 kb on + strand at 3327.572 kb on + strand at 3327.572 kb on + strand at 3327.573 kb on - strand at 3327.573 kb on - strand at 3327.573 kb on - strand at 3328.127 kb on + strand at 3328.128 kb on - strand at 3328.279 kb on + strand at 3328.279 kb on + strand at 3328.279 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.373 kb on - strand at 3328.373 kb on - strand at 3328.373 kb on - strand at 3328.373 kb on - strand at 3328.373 kb on - strand at 3328.373 kb on - strand at 3328.419 kb on + strand at 3328.419 kb on + strand at 3328.419 kb on + strand at 3328.420 kb on - strand at 3328.420 kb on - strand at 3328.420 kb on - strand at 3328.420 kb on - strand at 3328.420 kb on - strand at 3328.420 kb on - strand at 3328.602 kb on + strand at 3328.602 kb on + strand at 3328.605 kb on + strand at 3328.605 kb on + strand at 3328.605 kb on + strand at 3328.606 kb on - strand at 3328.606 kb on - strand at 3328.686 kb on + strand, within Xcc-8004.3438.1 at 3328.686 kb on + strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.791 kb on + strand, within Xcc-8004.3438.1 at 3328.792 kb on - strand, within Xcc-8004.3438.1 at 3328.850 kb on + strand, within Xcc-8004.3438.1 at 3328.850 kb on + strand, within Xcc-8004.3438.1 at 3328.850 kb on + strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.856 kb on + strand, within Xcc-8004.3438.1 at 3328.857 kb on - strand, within Xcc-8004.3438.1 at 3328.893 kb on - strand, within Xcc-8004.3438.1 at 3328.914 kb on + strand, within Xcc-8004.3438.1 at 3328.914 kb on + strand, within Xcc-8004.3438.1 at 3328.914 kb on + strand, within Xcc-8004.3438.1 at 3328.914 kb on + strand, within Xcc-8004.3438.1 at 3328.914 kb on + strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3329.067 kb on + strand, within Xcc-8004.3438.1 at 3329.067 kb on + strand, within Xcc-8004.3438.1 at 3329.067 kb on + strand, within Xcc-8004.3438.1 at 3329.067 kb on + strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.374 kb on - strand, within Xcc-8004.3438.1 at 3329.695 kb on - strand, within Xcc-8004.3438.1 at 3329.695 kb on - strand, within Xcc-8004.3438.1 at 3329.820 kb on + strand, within Xcc-8004.3438.1 at 3329.820 kb on + strand, within Xcc-8004.3438.1 at 3329.820 kb on + strand, within Xcc-8004.3438.1 at 3330.117 kb on + strand, within Xcc-8004.3438.1 at 3330.117 kb on + strand, within Xcc-8004.3438.1 at 3330.117 kb on + strand, within Xcc-8004.3438.1 at 3330.118 kb on - strand, within Xcc-8004.3438.1 at 3330.118 kb on - strand, within Xcc-8004.3438.1 at 3330.118 kb on - strand, within Xcc-8004.3438.1 at 3330.546 kb on + strand, within Xcc-8004.3438.1 at 3330.546 kb on + strand, within Xcc-8004.3438.1 at 3330.546 kb on + strand, within Xcc-8004.3438.1 at 3330.547 kb on - strand, within Xcc-8004.3438.1 at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.831 kb on + strand at 3330.832 kb on - strand at 3330.832 kb on - strand at 3330.850 kb on + strand at 3330.850 kb on + strand at 3330.850 kb on + strand at 3330.850 kb on + strand at 3330.851 kb on - strand at 3330.851 kb on - strand at 3330.880 kb on + strand at 3330.880 kb on + strand at 3330.880 kb on + strand at 3330.881 kb on - strand at 3330.891 kb on + strand at 3330.891 kb on + strand at 3330.891 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.925 kb on + strand at 3331.372 kb on + strand at 3331.408 kb on + strand at 3331.409 kb on - strand at 3331.415 kb on + strand at 3331.415 kb on + strand at 3331.415 kb on + strand at 3331.416 kb on - strand at 3331.416 kb on - strand at 3331.416 kb on - strand at 3331.416 kb on - strand at 3331.427 kb on + strand at 3331.427 kb on + strand at 3331.427 kb on + strand at 3331.427 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.535 kb on + strand at 3331.536 kb on - strand at 3331.681 kb on + strand, within Xcc-8004.3442.1 at 3331.681 kb on + strand, within Xcc-8004.3442.1 at 3331.682 kb on - strand, within Xcc-8004.3442.1 at 3331.794 kb on + strand, within Xcc-8004.3442.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,327,572 + +0.7 3,327,572 + +0.7 3,327,572 + -0.5 3,327,572 + +1.5 3,327,572 + -1.2 3,327,573 - +1.2 3,327,573 - +0.1 3,327,573 - -1.4 3,328,127 + -0.4 3,328,128 - +0.2 3,328,279 + -1.1 3,328,279 + -0.3 3,328,279 + +0.4 3,328,372 + -0.5 3,328,372 + -1.1 3,328,372 + -0.8 3,328,372 + -0.0 3,328,372 + +0.5 3,328,372 + +0.0 3,328,372 + -0.2 3,328,372 + +0.4 3,328,372 + +0.2 3,328,373 - -0.0 3,328,373 - -0.5 3,328,373 - -0.5 3,328,373 - -1.1 3,328,373 - +0.9 3,328,373 - +0.3 3,328,419 + -0.4 3,328,419 + +0.7 3,328,419 + +1.1 3,328,420 - +0.0 3,328,420 - +0.2 3,328,420 - -0.6 3,328,420 - -0.1 3,328,420 - -1.0 3,328,420 - -0.4 3,328,602 + -1.5 3,328,602 + -0.4 3,328,605 + +0.3 3,328,605 + -0.8 3,328,605 + -0.2 3,328,606 - -0.6 3,328,606 - -0.1 3,328,686 + Xcc-8004.3438.1 0.13 +0.5 3,328,686 + Xcc-8004.3438.1 0.13 -1.4 3,328,699 - Xcc-8004.3438.1 0.13 -0.6 3,328,699 - Xcc-8004.3438.1 0.13 +0.8 3,328,699 - Xcc-8004.3438.1 0.13 -1.4 3,328,699 - Xcc-8004.3438.1 0.13 +0.7 3,328,699 - Xcc-8004.3438.1 0.13 +0.3 3,328,699 - Xcc-8004.3438.1 0.13 -0.4 3,328,699 - Xcc-8004.3438.1 0.13 -0.5 3,328,699 - Xcc-8004.3438.1 0.13 +2.1 3,328,699 - Xcc-8004.3438.1 0.13 -0.1 3,328,699 - Xcc-8004.3438.1 0.13 +0.4 3,328,791 + Xcc-8004.3438.1 0.17 -0.8 3,328,792 - Xcc-8004.3438.1 0.17 +0.3 3,328,850 + Xcc-8004.3438.1 0.20 -0.9 3,328,850 + Xcc-8004.3438.1 0.20 +0.7 3,328,850 + Xcc-8004.3438.1 0.20 -1.1 3,328,851 - Xcc-8004.3438.1 0.20 -0.0 3,328,851 - Xcc-8004.3438.1 0.20 -1.3 3,328,851 - Xcc-8004.3438.1 0.20 +0.5 3,328,851 - Xcc-8004.3438.1 0.20 -0.3 3,328,851 - Xcc-8004.3438.1 0.20 +0.7 3,328,851 - Xcc-8004.3438.1 0.20 -0.9 3,328,851 - Xcc-8004.3438.1 0.20 -1.7 3,328,856 + Xcc-8004.3438.1 0.20 +1.5 3,328,857 - Xcc-8004.3438.1 0.20 -0.1 3,328,893 - Xcc-8004.3438.1 0.21 +0.6 3,328,914 + Xcc-8004.3438.1 0.22 +0.1 3,328,914 + Xcc-8004.3438.1 0.22 +0.4 3,328,914 + Xcc-8004.3438.1 0.22 +0.7 3,328,914 + Xcc-8004.3438.1 0.22 +0.1 3,328,914 + Xcc-8004.3438.1 0.22 -0.9 3,328,915 - Xcc-8004.3438.1 0.22 +0.1 3,328,915 - Xcc-8004.3438.1 0.22 -0.7 3,328,915 - Xcc-8004.3438.1 0.22 -1.7 3,328,915 - Xcc-8004.3438.1 0.22 -0.4 3,328,915 - Xcc-8004.3438.1 0.22 +0.1 3,328,915 - Xcc-8004.3438.1 0.22 +0.9 3,329,067 + Xcc-8004.3438.1 0.28 +0.7 3,329,067 + Xcc-8004.3438.1 0.28 -1.0 3,329,067 + Xcc-8004.3438.1 0.28 -1.2 3,329,067 + Xcc-8004.3438.1 0.28 +0.7 3,329,068 - Xcc-8004.3438.1 0.28 +0.1 3,329,068 - Xcc-8004.3438.1 0.28 +0.2 3,329,068 - Xcc-8004.3438.1 0.28 -0.9 3,329,068 - Xcc-8004.3438.1 0.28 -2.4 3,329,068 - Xcc-8004.3438.1 0.28 +0.5 3,329,068 - Xcc-8004.3438.1 0.28 +0.1 3,329,068 - Xcc-8004.3438.1 0.28 -1.4 3,329,374 - Xcc-8004.3438.1 0.41 -0.1 3,329,695 - Xcc-8004.3438.1 0.54 +0.2 3,329,695 - Xcc-8004.3438.1 0.54 +1.3 3,329,820 + Xcc-8004.3438.1 0.59 -0.2 3,329,820 + Xcc-8004.3438.1 0.59 +0.1 3,329,820 + Xcc-8004.3438.1 0.59 +0.4 3,330,117 + Xcc-8004.3438.1 0.71 -0.8 3,330,117 + Xcc-8004.3438.1 0.71 -0.0 3,330,117 + Xcc-8004.3438.1 0.71 -0.2 3,330,118 - Xcc-8004.3438.1 0.71 -0.1 3,330,118 - Xcc-8004.3438.1 0.71 -0.0 3,330,118 - Xcc-8004.3438.1 0.71 +1.3 3,330,546 + Xcc-8004.3438.1 0.89 -1.5 3,330,546 + Xcc-8004.3438.1 0.89 -0.6 3,330,546 + Xcc-8004.3438.1 0.89 -1.4 3,330,547 - Xcc-8004.3438.1 0.89 -1.2 3,330,648 + +0.9 3,330,648 + +0.4 3,330,648 + -0.7 3,330,648 + -0.2 3,330,648 + -0.0 3,330,648 + +0.6 3,330,648 + -2.1 3,330,648 + -0.3 3,330,648 + +0.4 3,330,648 + -1.3 3,330,648 + -0.7 3,330,648 + -0.0 3,330,648 + -0.0 3,330,648 + +0.7 3,330,648 + +0.8 3,330,648 + -1.0 3,330,648 + -1.6 3,330,649 - -1.4 3,330,649 - +0.6 3,330,649 - -1.6 3,330,649 - -0.9 3,330,649 - -0.0 3,330,649 - -1.3 3,330,649 - -0.2 3,330,649 - -0.2 3,330,649 - +0.3 3,330,649 - -1.0 3,330,649 - -0.6 3,330,649 - -0.1 3,330,649 - -0.7 3,330,649 - -2.3 3,330,649 - -0.7 3,330,649 - +0.6 3,330,649 - -1.0 3,330,649 - -0.7 3,330,649 - -0.2 3,330,649 - -1.8 3,330,831 + +2.1 3,330,832 - +0.2 3,330,832 - -1.5 3,330,850 + +0.2 3,330,850 + +0.1 3,330,850 + +0.3 3,330,850 + +0.6 3,330,851 - +1.1 3,330,851 - +1.6 3,330,880 + +1.2 3,330,880 + -0.1 3,330,880 + +0.5 3,330,881 - -0.4 3,330,891 + +0.4 3,330,891 + +0.6 3,330,891 + -1.1 3,330,899 + +0.9 3,330,899 + +0.2 3,330,899 + +0.2 3,330,899 + +0.5 3,330,899 + +0.0 3,330,899 + -0.6 3,330,925 + +1.1 3,331,372 + -0.7 3,331,408 + -1.0 3,331,409 - -0.1 3,331,415 + -0.7 3,331,415 + -0.7 3,331,415 + -0.5 3,331,416 - +0.7 3,331,416 - +0.3 3,331,416 - +2.1 3,331,416 - -1.3 3,331,427 + +0.1 3,331,427 + -0.2 3,331,427 + -0.1 3,331,427 + -0.4 3,331,447 + -1.0 3,331,447 + -1.2 3,331,447 + -1.9 3,331,447 + -0.9 3,331,447 + -0.8 3,331,447 + -0.5 3,331,447 + +0.7 3,331,447 + +0.7 3,331,448 - -0.2 3,331,448 - -1.0 3,331,448 - -0.8 3,331,448 - +0.2 3,331,448 - +1.3 3,331,515 + -1.1 3,331,515 + +0.4 3,331,515 + +0.2 3,331,515 + -0.2 3,331,515 + -1.2 3,331,515 + -0.5 3,331,516 - +0.4 3,331,516 - +0.0 3,331,516 - -0.4 3,331,516 - +1.1 3,331,516 - -0.4 3,331,516 - -1.0 3,331,516 - +0.7 3,331,535 + -0.1 3,331,536 - +0.3 3,331,681 + Xcc-8004.3442.1 0.38 +0.1 3,331,681 + Xcc-8004.3442.1 0.38 +4.6 3,331,682 - Xcc-8004.3442.1 0.38 -0.4 3,331,794 + Xcc-8004.3442.1 0.85 -0.8
Or see this region's nucleotide sequence