Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3437.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,326,769	+				-0.8
3,326,769	+				+0.3
3,326,770	-				+0.1
3,326,770	-				-0.2
3,326,849	+				-1.7
3,326,850	-				-0.1
3,326,850	-				+0.3
3,327,107	+		Xcc-8004.3435.1	0.87	-2.3
3,327,148	+				+0.7
3,327,148	+				+0.5
3,327,148	+				+1.2
3,327,149	-				+0.9
3,327,149	-				+0.9
3,327,149	-				+0.7
3,327,149	-				-0.3
3,327,149	-				-1.3
3,327,572	+				+0.7
3,327,572	+				+0.7
3,327,572	+				-0.5
3,327,572	+				+1.5
3,327,572	+				-1.2
3,327,573	-				+1.2
3,327,573	-				+0.1
3,327,573	-				-1.4
3,328,127	+				-0.4
3,328,128	-				+0.2
3,328,279	+				-1.1
3,328,279	+				-0.3
3,328,279	+				+0.4
3,328,372	+				-0.5
3,328,372	+				-1.1
3,328,372	+				-0.8
3,328,372	+				-0.0
3,328,372	+				+0.5
3,328,372	+				+0.0
3,328,372	+				-0.2
3,328,372	+				+0.4
3,328,372	+				+0.2
3,328,373	-				-0.0
3,328,373	-				-0.5
3,328,373	-				-0.5
3,328,373	-				-1.1
3,328,373	-				+0.9
3,328,373	-				+0.3
3,328,419	+				-0.4
3,328,419	+				+0.7
3,328,419	+				+1.1
3,328,420	-				+0.0
3,328,420	-				+0.2
3,328,420	-				-0.6
3,328,420	-				-0.1
3,328,420	-				-1.0
3,328,420	-				-0.4
3,328,602	+				-1.5
3,328,602	+				-0.4
3,328,605	+				+0.3
3,328,605	+				-0.8
3,328,605	+				-0.2
3,328,606	-				-0.6
3,328,606	-				-0.1
3,328,686	+		Xcc-8004.3438.1	0.13	+0.5
3,328,686	+		Xcc-8004.3438.1	0.13	-1.4
3,328,699	-		Xcc-8004.3438.1	0.13	-0.6
3,328,699	-		Xcc-8004.3438.1	0.13	+0.8
3,328,699	-		Xcc-8004.3438.1	0.13	-1.4
3,328,699	-		Xcc-8004.3438.1	0.13	+0.7
3,328,699	-		Xcc-8004.3438.1	0.13	+0.3
3,328,699	-		Xcc-8004.3438.1	0.13	-0.4
3,328,699	-		Xcc-8004.3438.1	0.13	-0.5
3,328,699	-		Xcc-8004.3438.1	0.13	+2.1
3,328,699	-		Xcc-8004.3438.1	0.13	-0.1
3,328,699	-		Xcc-8004.3438.1	0.13	+0.4
3,328,791	+		Xcc-8004.3438.1	0.17	-0.8
3,328,792	-		Xcc-8004.3438.1	0.17	+0.3
3,328,850	+		Xcc-8004.3438.1	0.20	-0.9
3,328,850	+		Xcc-8004.3438.1	0.20	+0.7
3,328,850	+		Xcc-8004.3438.1	0.20	-1.1
3,328,851	-		Xcc-8004.3438.1	0.20	-0.0
3,328,851	-		Xcc-8004.3438.1	0.20	-1.3
3,328,851	-		Xcc-8004.3438.1	0.20	+0.5
3,328,851	-		Xcc-8004.3438.1	0.20	-0.3
3,328,851	-		Xcc-8004.3438.1	0.20	+0.7
3,328,851	-		Xcc-8004.3438.1	0.20	-0.9
3,328,851	-		Xcc-8004.3438.1	0.20	-1.7
3,328,856	+		Xcc-8004.3438.1	0.20	+1.5
3,328,857	-		Xcc-8004.3438.1	0.20	-0.1
3,328,893	-		Xcc-8004.3438.1	0.21	+0.6
3,328,914	+		Xcc-8004.3438.1	0.22	+0.1
3,328,914	+		Xcc-8004.3438.1	0.22	+0.4
3,328,914	+		Xcc-8004.3438.1	0.22	+0.7
3,328,914	+		Xcc-8004.3438.1	0.22	+0.1
3,328,914	+		Xcc-8004.3438.1	0.22	-0.9
3,328,915	-		Xcc-8004.3438.1	0.22	+0.1
3,328,915	-		Xcc-8004.3438.1	0.22	-0.7
3,328,915	-		Xcc-8004.3438.1	0.22	-1.7
3,328,915	-		Xcc-8004.3438.1	0.22	-0.4
3,328,915	-		Xcc-8004.3438.1	0.22	+0.1
3,328,915	-		Xcc-8004.3438.1	0.22	+0.9
3,329,067	+		Xcc-8004.3438.1	0.28	+0.7
3,329,067	+		Xcc-8004.3438.1	0.28	-1.0
3,329,067	+		Xcc-8004.3438.1	0.28	-1.2
3,329,067	+		Xcc-8004.3438.1	0.28	+0.7
3,329,068	-		Xcc-8004.3438.1	0.28	+0.1
3,329,068	-		Xcc-8004.3438.1	0.28	+0.2
3,329,068	-		Xcc-8004.3438.1	0.28	-0.9
3,329,068	-		Xcc-8004.3438.1	0.28	-2.4
3,329,068	-		Xcc-8004.3438.1	0.28	+0.5
3,329,068	-		Xcc-8004.3438.1	0.28	+0.1
3,329,068	-		Xcc-8004.3438.1	0.28	-1.4