Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3329.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,228,622	+				+0.2
3,228,622	+				-0.1
3,228,623	-				-0.4
3,228,623	-				+1.3
3,228,640	+				-0.1
3,228,727	+				-0.8
3,228,727	+				+1.5
3,228,727	+				+1.2
3,228,728	-				+1.9
3,228,728	-				-1.1
3,228,728	-				-1.2
3,228,728	-				-0.6
3,228,802	+				-0.8
3,228,802	+				+1.7
3,228,802	+				+0.2
3,228,802	+				-0.6
3,228,802	+				+0.7
3,228,802	+				-1.1
3,228,802	+				-0.6
3,228,802	+				-0.1
3,228,803	-				+1.6
3,228,803	-				+0.3
3,228,803	-				-0.5
3,228,803	-				+0.7
3,228,803	-				+0.1
3,228,803	-				+0.5
3,228,803	-				-0.4
3,228,803	-				+1.6
3,228,803	-				-0.2
3,228,821	-				+0.9
3,228,937	+				+0.2
3,228,937	+				-0.3
3,228,938	-				-1.4
3,228,938	-				-1.1
3,228,938	-				+0.4
3,229,004	+				-0.6
3,229,005	-				+0.0
3,229,005	-				+1.1
3,229,007	+				-0.1
3,229,007	+				-0.9
3,229,008	-				+0.5
3,229,008	-				+0.5
3,229,083	+				+0.7
3,229,083	+				+1.0
3,229,227	+		Xcc-8004.3329.1	0.11	-0.3
3,229,378	+		Xcc-8004.3329.1	0.22	-0.9
3,229,378	+		Xcc-8004.3329.1	0.22	+0.6
3,229,379	-		Xcc-8004.3329.1	0.22	+0.1
3,229,414	-		Xcc-8004.3329.1	0.24	-1.4
3,229,606	-		Xcc-8004.3329.1	0.38	-1.3
3,229,662	+		Xcc-8004.3329.1	0.41	-1.7
3,230,100	+		Xcc-8004.3329.1	0.72	+2.2
3,230,154	+		Xcc-8004.3329.1	0.76	-0.8
3,230,154	+		Xcc-8004.3329.1	0.76	+0.3
3,230,154	+		Xcc-8004.3329.1	0.76	-0.9
3,230,154	+		Xcc-8004.3329.1	0.76	-0.3
3,230,155	-		Xcc-8004.3329.1	0.76	-1.3
3,230,155	-		Xcc-8004.3329.1	0.76	+0.6
3,230,340	+		Xcc-8004.3329.1	0.88	+0.2
3,230,444	+				-1.2
3,230,445	-				+0.6
3,230,504	-				-1.1
3,230,514	-				-0.9
3,230,514	-				+0.8
3,230,720	+		Xcc-8004.3330.1	0.31	+1.5
3,230,720	+		Xcc-8004.3330.1	0.31	-1.6
3,230,721	-		Xcc-8004.3330.1	0.32	-0.2
3,230,721	-		Xcc-8004.3330.1	0.32	+1.0
3,230,822	+		Xcc-8004.3330.1	0.46	-0.5
3,230,822	+		Xcc-8004.3330.1	0.46	-2.6
3,230,823	-		Xcc-8004.3330.1	0.46	+1.3
3,231,065	+		Xcc-8004.3330.1	0.82	+0.2
3,231,065	+		Xcc-8004.3330.1	0.82	+1.8
3,231,272	+				+1.6
3,231,272	+				-0.6
3,231,272	+				+0.4
3,231,272	+				-1.5
3,231,375	+		Xcc-8004.3331.1	0.13	-0.8
3,231,376	-		Xcc-8004.3331.1	0.13	-0.4
3,231,489	+		Xcc-8004.3331.1	0.32	-1.1
3,231,490	-		Xcc-8004.3331.1	0.33	-0.5