Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3310.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,211,205	+				-0.6
3,211,225	+				-1.4
3,211,225	+				-0.1
3,211,225	+				+0.3
3,211,225	+				+0.1
3,211,226	-				+0.7
3,211,226	-				-0.7
3,211,226	-				+1.6
3,211,226	-				-0.0
3,211,226	-				-0.1
3,211,226	-				-0.2
3,212,169	-				-2.5
3,212,169	-				+0.5
3,212,454	+				+1.5
3,212,454	+				+0.1
3,212,455	-				+1.5
3,212,455	-				-0.2
3,212,585	-		Xcc-8004.3310.1	0.11	-0.8
3,212,614	+		Xcc-8004.3310.1	0.12	+1.1
3,212,615	-		Xcc-8004.3310.1	0.12	+0.8
3,212,749	+		Xcc-8004.3310.1	0.16	+0.5
3,212,777	-		Xcc-8004.3310.1	0.17	-1.2
3,213,309	+		Xcc-8004.3310.1	0.32	+1.1
3,213,486	+		Xcc-8004.3310.1	0.37	-0.4
3,213,589	+		Xcc-8004.3310.1	0.40	-0.4
3,213,589	+		Xcc-8004.3310.1	0.40	-1.1
3,213,589	+		Xcc-8004.3310.1	0.40	+1.5
3,213,589	+		Xcc-8004.3310.1	0.40	-1.8
3,213,589	+		Xcc-8004.3310.1	0.40	-0.4
3,213,589	+		Xcc-8004.3310.1	0.40	+0.7
3,213,589	+		Xcc-8004.3310.1	0.40	+2.1
3,213,589	+		Xcc-8004.3310.1	0.40	+1.5
3,213,590	-		Xcc-8004.3310.1	0.40	+3.1
3,213,590	-		Xcc-8004.3310.1	0.40	+2.1
3,213,590	-		Xcc-8004.3310.1	0.40	+0.5
3,213,590	-		Xcc-8004.3310.1	0.40	-1.0
3,213,590	-		Xcc-8004.3310.1	0.40	+0.3
3,214,816	+		Xcc-8004.3310.1	0.75	-1.5
3,215,044	+		Xcc-8004.3310.1	0.81	+2.1
3,215,180	-		Xcc-8004.3310.1	0.85	-0.7
3,215,180	-		Xcc-8004.3310.1	0.85	+4.6
3,215,180	-		Xcc-8004.3310.1	0.85	-0.9
3,215,210	-		Xcc-8004.3310.1	0.86	-0.3
3,215,350	+				+2.5
3,215,350	+				+3.1
3,215,350	+				+0.5
3,215,350	+				+0.5
3,215,350	+				+1.1
3,215,351	-				+0.1
3,215,351	-				+1.1
3,215,351	-				+0.5
3,215,351	-				+0.4
3,215,351	-				-0.8
3,215,353	+				-0.8
3,215,353	+				-1.6
3,215,354	-				+0.3
3,215,354	-				+3.1
3,215,442	-				+1.3
3,215,703	+				-0.9
3,215,704	-				+0.6
3,215,789	+				+0.3
3,215,790	-				-1.6
3,215,790	-				-0.3
3,215,790	-				+0.8
3,215,816	+				+1.6
3,215,817	-				-0.4
3,215,817	-				-2.1
3,215,817	-				-0.8
3,215,817	-				-1.9
3,215,818	+				+0.7
3,215,818	+				+1.2
3,215,819	-				-0.7
3,215,819	-				-0.1
3,215,819	-				+3.1
3,215,988	-		Xcc-8004.3312.1	0.24	-0.6
3,216,116	+		Xcc-8004.3312.1	0.35	-0.7
3,216,116	+		Xcc-8004.3312.1	0.35	+0.1
3,216,116	+		Xcc-8004.3312.1	0.35	+0.9
3,216,117	-		Xcc-8004.3312.1	0.35	+0.6
3,216,117	-		Xcc-8004.3312.1	0.35	-0.5
3,216,117	-		Xcc-8004.3312.1	0.35	-0.4
3,216,117	-		Xcc-8004.3312.1	0.35	+0.4
3,216,117	-		Xcc-8004.3312.1	0.35	-0.9
3,216,252	+		Xcc-8004.3312.1	0.47	+1.4
3,216,252	+		Xcc-8004.3312.1	0.47	-0.5
3,216,253	-		Xcc-8004.3312.1	0.47	+0.3
3,216,279	+		Xcc-8004.3312.1	0.49	-2.1
3,216,279	+		Xcc-8004.3312.1	0.49	+2.6
3,216,279	+		Xcc-8004.3312.1	0.49	-1.2
3,216,279	+		Xcc-8004.3312.1	0.49	-0.0
3,216,280	-		Xcc-8004.3312.1	0.49	-0.3
3,216,478	+		Xcc-8004.3312.1	0.66	-0.0
3,216,480	+		Xcc-8004.3312.1	0.66	-0.7
3,216,480	+		Xcc-8004.3312.1	0.66	+0.6
3,216,480	+		Xcc-8004.3312.1	0.66	-1.2
3,216,480	+		Xcc-8004.3312.1	0.66	-0.7
3,216,480	+		Xcc-8004.3312.1	0.66	-0.4
3,216,481	-		Xcc-8004.3312.1	0.66	-0.4
3,216,481	-		Xcc-8004.3312.1	0.66	+0.5
3,216,481	-		Xcc-8004.3312.1	0.66	+3.1
3,216,542	+		Xcc-8004.3312.1	0.71	+1.1