Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3307.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3306.1 and Xcc-8004.3307.1 are separated by 48 nucleotidesXcc-8004.3307.1 and Xcc-8004.3309.1 are separated by 181 nucleotidesXcc-8004.3309.1 and Xcc-8004.3310.1 are separated by 56 nucleotides Xcc-8004.3306.1: Xcc-8004.3306.1 - DNA ligase (EC 6.5.1.2), at 3,207,408 to 3,209,909 Xcc-8004.3306.1 Xcc-8004.3307.1: Xcc-8004.3307.1 - Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57), at 3,209,958 to 3,211,220 Xcc-8004.3307.1 Xcc-8004.3309.1: Xcc-8004.3309.1 - Cell division protein ZipA, at 3,211,402 to 3,212,136 Xcc-8004.3309.1 Xcc-8004.3310.1: Xcc-8004.3310.1 - Chromosome partition protein smc, at 3,212,193 to 3,215,696 Xcc-8004.3310.1 Position (kb) 3209 3210 3211 3212Strain fitness (log2 ratio) -2 -1 0 1 2at 3209.943 kb on + strandat 3209.943 kb on + strandat 3209.943 kb on + strandat 3209.943 kb on + strandat 3209.944 kb on - strandat 3210.032 kb on + strandat 3210.249 kb on + strand, within Xcc-8004.3307.1at 3210.250 kb on - strand, within Xcc-8004.3307.1at 3210.250 kb on - strand, within Xcc-8004.3307.1at 3210.250 kb on - strand, within Xcc-8004.3307.1at 3210.250 kb on - strand, within Xcc-8004.3307.1at 3210.250 kb on - strand, within Xcc-8004.3307.1at 3210.250 kb on - strand, within Xcc-8004.3307.1at 3210.250 kb on - strand, within Xcc-8004.3307.1at 3210.250 kb on - strand, within Xcc-8004.3307.1at 3210.333 kb on + strand, within Xcc-8004.3307.1at 3210.333 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.653 kb on + strand, within Xcc-8004.3307.1at 3210.654 kb on - strand, within Xcc-8004.3307.1at 3210.654 kb on - strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.735 kb on + strand, within Xcc-8004.3307.1at 3210.735 kb on + strand, within Xcc-8004.3307.1at 3210.735 kb on + strand, within Xcc-8004.3307.1at 3210.736 kb on - strand, within Xcc-8004.3307.1at 3210.736 kb on - strand, within Xcc-8004.3307.1at 3210.814 kb on - strand, within Xcc-8004.3307.1at 3211.020 kb on + strand, within Xcc-8004.3307.1at 3211.020 kb on + strand, within Xcc-8004.3307.1at 3211.020 kb on + strand, within Xcc-8004.3307.1at 3211.021 kb on - strand, within Xcc-8004.3307.1at 3211.021 kb on - strand, within Xcc-8004.3307.1at 3211.021 kb on - strand, within Xcc-8004.3307.1at 3211.205 kb on + strandat 3211.225 kb on + strandat 3211.225 kb on + strandat 3211.225 kb on + strandat 3211.225 kb on + strandat 3211.226 kb on - strandat 3211.226 kb on - strandat 3211.226 kb on - strandat 3211.226 kb on - strandat 3211.226 kb on - strandat 3211.226 kb on - strandat 3212.169 kb on - strandat 3212.169 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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3,209,943 + +1.1
3,209,943 + -0.2
3,209,943 + -0.8
3,209,943 + +1.8
3,209,944 - +0.2
3,210,032 + -0.0
3,210,249 + Xcc-8004.3307.1 0.23 +0.5
3,210,250 - Xcc-8004.3307.1 0.23 -0.7
3,210,250 - Xcc-8004.3307.1 0.23 -0.8
3,210,250 - Xcc-8004.3307.1 0.23 -1.3
3,210,250 - Xcc-8004.3307.1 0.23 +0.4
3,210,250 - Xcc-8004.3307.1 0.23 +0.7
3,210,250 - Xcc-8004.3307.1 0.23 -0.0
3,210,250 - Xcc-8004.3307.1 0.23 -0.4
3,210,250 - Xcc-8004.3307.1 0.23 +0.2
3,210,333 + Xcc-8004.3307.1 0.30 +1.2
3,210,333 + Xcc-8004.3307.1 0.30 -1.2
3,210,618 + Xcc-8004.3307.1 0.52 +0.1
3,210,618 + Xcc-8004.3307.1 0.52 -1.4
3,210,618 + Xcc-8004.3307.1 0.52 -0.7
3,210,618 + Xcc-8004.3307.1 0.52 +0.0
3,210,618 + Xcc-8004.3307.1 0.52 -0.5
3,210,618 + Xcc-8004.3307.1 0.52 +2.3
3,210,618 + Xcc-8004.3307.1 0.52 -0.1
3,210,618 + Xcc-8004.3307.1 0.52 +0.9
3,210,618 + Xcc-8004.3307.1 0.52 -0.5
3,210,618 + Xcc-8004.3307.1 0.52 +0.8
3,210,618 + Xcc-8004.3307.1 0.52 +0.2
3,210,619 - Xcc-8004.3307.1 0.52 +0.6
3,210,619 - Xcc-8004.3307.1 0.52 +0.1
3,210,619 - Xcc-8004.3307.1 0.52 -1.0
3,210,619 - Xcc-8004.3307.1 0.52 +0.1
3,210,619 - Xcc-8004.3307.1 0.52 +0.4
3,210,619 - Xcc-8004.3307.1 0.52 -0.0
3,210,619 - Xcc-8004.3307.1 0.52 +0.2
3,210,619 - Xcc-8004.3307.1 0.52 +0.2
3,210,653 + Xcc-8004.3307.1 0.55 -0.9
3,210,654 - Xcc-8004.3307.1 0.55 -1.5
3,210,654 - Xcc-8004.3307.1 0.55 +0.3
3,210,726 + Xcc-8004.3307.1 0.61 -0.1
3,210,726 + Xcc-8004.3307.1 0.61 +0.6
3,210,726 + Xcc-8004.3307.1 0.61 -1.6
3,210,726 + Xcc-8004.3307.1 0.61 -0.7
3,210,726 + Xcc-8004.3307.1 0.61 +0.0
3,210,726 + Xcc-8004.3307.1 0.61 +0.1
3,210,726 + Xcc-8004.3307.1 0.61 -0.4
3,210,726 + Xcc-8004.3307.1 0.61 -0.4
3,210,726 + Xcc-8004.3307.1 0.61 +1.5
3,210,726 + Xcc-8004.3307.1 0.61 -0.3
3,210,727 - Xcc-8004.3307.1 0.61 -0.6
3,210,727 - Xcc-8004.3307.1 0.61 -0.7
3,210,727 - Xcc-8004.3307.1 0.61 +0.9
3,210,727 - Xcc-8004.3307.1 0.61 -0.1
3,210,727 - Xcc-8004.3307.1 0.61 +0.4
3,210,727 - Xcc-8004.3307.1 0.61 +0.3
3,210,727 - Xcc-8004.3307.1 0.61 -1.6
3,210,735 + Xcc-8004.3307.1 0.62 -1.4
3,210,735 + Xcc-8004.3307.1 0.62 -0.0
3,210,735 + Xcc-8004.3307.1 0.62 +0.2
3,210,736 - Xcc-8004.3307.1 0.62 -0.4
3,210,736 - Xcc-8004.3307.1 0.62 +0.3
3,210,814 - Xcc-8004.3307.1 0.68 -0.5
3,211,020 + Xcc-8004.3307.1 0.84 +0.1
3,211,020 + Xcc-8004.3307.1 0.84 +1.5
3,211,020 + Xcc-8004.3307.1 0.84 -0.6
3,211,021 - Xcc-8004.3307.1 0.84 +0.4
3,211,021 - Xcc-8004.3307.1 0.84 +0.3
3,211,021 - Xcc-8004.3307.1 0.84 +0.4
3,211,205 + -0.6
3,211,225 + -1.4
3,211,225 + -0.1
3,211,225 + +0.3
3,211,225 + +0.1
3,211,226 - +0.7
3,211,226 - -0.7
3,211,226 - +1.6
3,211,226 - -0.0
3,211,226 - -0.1
3,211,226 - -0.2
3,212,169 - -2.5
3,212,169 - +0.5

Or see this region's nucleotide sequence