Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3162.1 and Xcc-8004.3163.1 overlap by 66 nucleotides Xcc-8004.3163.1 and Xcc-8004.3164.1 are separated by 25 nucleotides
Xcc-8004.3162.1: Xcc-8004.3162.1 - FIG01211092: hypothetical protein, at 3,081,177 to 3,082,265
Xcc-8004.3162.1
Xcc-8004.3163.1: Xcc-8004.3163.1 - Radical SAM domain protein, at 3,082,200 to 3,083,969
Xcc-8004.3163.1
Xcc-8004.3164.1: Xcc-8004.3164.1 - FIG01211473: hypothetical protein, at 3,083,995 to 3,085,236
Xcc-8004.3164.1
Position (kb) 3082
3083
3084 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3081.268 kb on + strand at 3081.270 kb on + strand at 3081.271 kb on - strand at 3081.271 kb on - strand at 3081.328 kb on + strand, within Xcc-8004.3162.1 at 3081.329 kb on - strand, within Xcc-8004.3162.1 at 3081.835 kb on + strand, within Xcc-8004.3162.1 at 3081.836 kb on - strand, within Xcc-8004.3162.1 at 3081.904 kb on + strand, within Xcc-8004.3162.1 at 3081.904 kb on + strand, within Xcc-8004.3162.1 at 3081.904 kb on + strand, within Xcc-8004.3162.1 at 3082.017 kb on - strand, within Xcc-8004.3162.1 at 3082.064 kb on - strand, within Xcc-8004.3162.1 at 3082.128 kb on + strand, within Xcc-8004.3162.1 at 3082.128 kb on + strand, within Xcc-8004.3162.1 at 3082.490 kb on - strand, within Xcc-8004.3163.1 at 3082.513 kb on - strand, within Xcc-8004.3163.1 at 3082.513 kb on - strand, within Xcc-8004.3163.1 at 3082.701 kb on + strand, within Xcc-8004.3163.1 at 3082.884 kb on - strand, within Xcc-8004.3163.1 at 3083.104 kb on - strand, within Xcc-8004.3163.1 at 3083.184 kb on + strand, within Xcc-8004.3163.1 at 3083.184 kb on + strand, within Xcc-8004.3163.1 at 3083.185 kb on - strand, within Xcc-8004.3163.1 at 3083.288 kb on + strand, within Xcc-8004.3163.1 at 3083.458 kb on + strand, within Xcc-8004.3163.1 at 3083.459 kb on - strand, within Xcc-8004.3163.1 at 3083.459 kb on - strand, within Xcc-8004.3163.1 at 3083.459 kb on - strand, within Xcc-8004.3163.1 at 3083.559 kb on + strand, within Xcc-8004.3163.1 at 3083.560 kb on - strand, within Xcc-8004.3163.1 at 3083.560 kb on - strand, within Xcc-8004.3163.1 at 3083.752 kb on - strand, within Xcc-8004.3163.1 at 3083.752 kb on - strand, within Xcc-8004.3163.1 at 3083.767 kb on - strand, within Xcc-8004.3163.1 at 3083.841 kb on + strand at 3083.999 kb on + strand at 3083.999 kb on + strand at 3083.999 kb on + strand at 3083.999 kb on + strand at 3084.401 kb on + strand, within Xcc-8004.3164.1 at 3084.401 kb on + strand, within Xcc-8004.3164.1 at 3084.402 kb on - strand, within Xcc-8004.3164.1 at 3084.402 kb on - strand, within Xcc-8004.3164.1 at 3084.408 kb on - strand, within Xcc-8004.3164.1 at 3084.457 kb on + strand, within Xcc-8004.3164.1 at 3084.458 kb on - strand, within Xcc-8004.3164.1 at 3084.458 kb on - strand, within Xcc-8004.3164.1 at 3084.620 kb on + strand, within Xcc-8004.3164.1 at 3084.857 kb on - strand, within Xcc-8004.3164.1 at 3084.859 kb on + strand, within Xcc-8004.3164.1 at 3084.859 kb on + strand, within Xcc-8004.3164.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,081,268 + +0.1 3,081,270 + -0.6 3,081,271 - -1.1 3,081,271 - +0.9 3,081,328 + Xcc-8004.3162.1 0.14 +0.0 3,081,329 - Xcc-8004.3162.1 0.14 -0.1 3,081,835 + Xcc-8004.3162.1 0.60 +0.6 3,081,836 - Xcc-8004.3162.1 0.61 +1.3 3,081,904 + Xcc-8004.3162.1 0.67 +1.1 3,081,904 + Xcc-8004.3162.1 0.67 -1.0 3,081,904 + Xcc-8004.3162.1 0.67 -0.5 3,082,017 - Xcc-8004.3162.1 0.77 -0.7 3,082,064 - Xcc-8004.3162.1 0.81 +2.3 3,082,128 + Xcc-8004.3162.1 0.87 -0.8 3,082,128 + Xcc-8004.3162.1 0.87 +1.3 3,082,490 - Xcc-8004.3163.1 0.16 -0.7 3,082,513 - Xcc-8004.3163.1 0.18 -1.3 3,082,513 - Xcc-8004.3163.1 0.18 -0.5 3,082,701 + Xcc-8004.3163.1 0.28 +0.7 3,082,884 - Xcc-8004.3163.1 0.39 +1.3 3,083,104 - Xcc-8004.3163.1 0.51 -0.8 3,083,184 + Xcc-8004.3163.1 0.56 -1.1 3,083,184 + Xcc-8004.3163.1 0.56 +1.0 3,083,185 - Xcc-8004.3163.1 0.56 -1.4 3,083,288 + Xcc-8004.3163.1 0.61 -1.5 3,083,458 + Xcc-8004.3163.1 0.71 -0.8 3,083,459 - Xcc-8004.3163.1 0.71 -0.7 3,083,459 - Xcc-8004.3163.1 0.71 -1.0 3,083,459 - Xcc-8004.3163.1 0.71 -0.5 3,083,559 + Xcc-8004.3163.1 0.77 +1.1 3,083,560 - Xcc-8004.3163.1 0.77 -0.6 3,083,560 - Xcc-8004.3163.1 0.77 +0.8 3,083,752 - Xcc-8004.3163.1 0.88 +0.4 3,083,752 - Xcc-8004.3163.1 0.88 -2.2 3,083,767 - Xcc-8004.3163.1 0.89 +0.9 3,083,841 + -1.3 3,083,999 + -0.5 3,083,999 + -0.8 3,083,999 + +1.2 3,083,999 + -0.0 3,084,401 + Xcc-8004.3164.1 0.33 -0.5 3,084,401 + Xcc-8004.3164.1 0.33 -0.3 3,084,402 - Xcc-8004.3164.1 0.33 -0.9 3,084,402 - Xcc-8004.3164.1 0.33 +0.2 3,084,408 - Xcc-8004.3164.1 0.33 -1.3 3,084,457 + Xcc-8004.3164.1 0.37 -1.2 3,084,458 - Xcc-8004.3164.1 0.37 +0.5 3,084,458 - Xcc-8004.3164.1 0.37 -1.0 3,084,620 + Xcc-8004.3164.1 0.50 +0.5 3,084,857 - Xcc-8004.3164.1 0.69 -0.5 3,084,859 + Xcc-8004.3164.1 0.70 +0.1 3,084,859 + Xcc-8004.3164.1 0.70 -1.9
Or see this region's nucleotide sequence