Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.312.1 and Xcc-8004.314.1 are separated by 3 nucleotides Xcc-8004.314.1 and Xcc-8004.315.1 overlap by 61 nucleotides Xcc-8004.315.1 and Xcc-8004.316.1 are separated by 35 nucleotides
Xcc-8004.312.1: Xcc-8004.312.1 - cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases, at 300,327 to 301,370
Xcc-8004.312.1
Xcc-8004.314.1: Xcc-8004.314.1 - Adenylate cyclase (EC 4.6.1.1), at 301,374 to 304,034
Xcc-8004.314.1
Xcc-8004.315.1: Xcc-8004.315.1 - FIG01211941: hypothetical protein, at 303,974 to 304,363
Xcc-8004.315.1
Xcc-8004.316.1: Xcc-8004.316.1 - FAD-dependent pyridine nucleotide-disulphide oxidoreductase, at 304,399 to 305,595
Xcc-8004.316.1
Position (kb) 301
302
303
304
305 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 300.449 kb on + strand, within Xcc-8004.312.1 at 300.450 kb on - strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.828 kb on + strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 300.829 kb on - strand, within Xcc-8004.312.1 at 301.008 kb on + strand, within Xcc-8004.312.1 at 301.008 kb on + strand, within Xcc-8004.312.1 at 301.009 kb on - strand, within Xcc-8004.312.1 at 301.266 kb on + strand at 301.266 kb on + strand at 301.266 kb on + strand at 301.266 kb on + strand at 301.266 kb on + strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.267 kb on - strand at 301.268 kb on + strand at 301.269 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.279 kb on - strand at 301.280 kb on + strand at 301.303 kb on - strand at 301.303 kb on - strand at 301.341 kb on + strand at 301.342 kb on - strand at 301.342 kb on - strand at 301.368 kb on + strand at 301.368 kb on + strand at 301.435 kb on + strand at 301.436 kb on - strand at 301.436 kb on - strand at 301.968 kb on + strand, within Xcc-8004.314.1 at 301.968 kb on + strand, within Xcc-8004.314.1 at 301.968 kb on + strand, within Xcc-8004.314.1 at 301.969 kb on - strand, within Xcc-8004.314.1 at 301.969 kb on - strand, within Xcc-8004.314.1 at 302.036 kb on + strand, within Xcc-8004.314.1 at 302.080 kb on + strand, within Xcc-8004.314.1 at 302.081 kb on - strand, within Xcc-8004.314.1 at 302.253 kb on + strand, within Xcc-8004.314.1 at 302.360 kb on - strand, within Xcc-8004.314.1 at 302.554 kb on + strand, within Xcc-8004.314.1 at 302.558 kb on - strand, within Xcc-8004.314.1 at 302.558 kb on - strand, within Xcc-8004.314.1 at 302.558 kb on - strand, within Xcc-8004.314.1 at 302.628 kb on + strand, within Xcc-8004.314.1 at 302.628 kb on + strand, within Xcc-8004.314.1 at 302.629 kb on - strand, within Xcc-8004.314.1 at 302.784 kb on + strand, within Xcc-8004.314.1 at 302.838 kb on + strand, within Xcc-8004.314.1 at 302.838 kb on + strand, within Xcc-8004.314.1 at 302.838 kb on + strand, within Xcc-8004.314.1 at 302.838 kb on + strand, within Xcc-8004.314.1 at 302.863 kb on + strand, within Xcc-8004.314.1 at 302.863 kb on + strand, within Xcc-8004.314.1 at 302.863 kb on + strand, within Xcc-8004.314.1 at 302.864 kb on - strand, within Xcc-8004.314.1 at 302.864 kb on - strand, within Xcc-8004.314.1 at 303.011 kb on - strand, within Xcc-8004.314.1 at 303.621 kb on - strand, within Xcc-8004.314.1 at 303.726 kb on + strand, within Xcc-8004.314.1 at 303.895 kb on - strand at 303.975 kb on + strand at 304.000 kb on + strand at 304.053 kb on + strand, within Xcc-8004.315.1 at 304.053 kb on + strand, within Xcc-8004.315.1 at 304.054 kb on - strand, within Xcc-8004.315.1 at 304.054 kb on - strand, within Xcc-8004.315.1 at 304.365 kb on - strand at 304.407 kb on - strand at 304.576 kb on - strand, within Xcc-8004.316.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 300,449 + Xcc-8004.312.1 0.12 -0.3 300,450 - Xcc-8004.312.1 0.12 -1.6 300,828 + Xcc-8004.312.1 0.48 -0.4 300,828 + Xcc-8004.312.1 0.48 +1.7 300,828 + Xcc-8004.312.1 0.48 -1.6 300,828 + Xcc-8004.312.1 0.48 -1.0 300,828 + Xcc-8004.312.1 0.48 -0.6 300,829 - Xcc-8004.312.1 0.48 -1.0 300,829 - Xcc-8004.312.1 0.48 +1.9 300,829 - Xcc-8004.312.1 0.48 +0.1 300,829 - Xcc-8004.312.1 0.48 -0.9 301,008 + Xcc-8004.312.1 0.65 -0.4 301,008 + Xcc-8004.312.1 0.65 -0.1 301,009 - Xcc-8004.312.1 0.65 +0.9 301,266 + +0.4 301,266 + +0.5 301,266 + +1.0 301,266 + +0.7 301,266 + -2.7 301,267 - +1.4 301,267 - +0.3 301,267 - -0.0 301,267 - -1.2 301,267 - -0.9 301,268 + -0.4 301,269 - -0.2 301,279 - +0.8 301,279 - +0.2 301,279 - -0.6 301,279 - -0.4 301,279 - +0.8 301,280 + -1.4 301,303 - -0.7 301,303 - +0.1 301,341 + +0.7 301,342 - -0.5 301,342 - +0.0 301,368 + +1.6 301,368 + -0.1 301,435 + -0.4 301,436 - -0.3 301,436 - -0.8 301,968 + Xcc-8004.314.1 0.22 -0.8 301,968 + Xcc-8004.314.1 0.22 +0.5 301,968 + Xcc-8004.314.1 0.22 +0.5 301,969 - Xcc-8004.314.1 0.22 +1.4 301,969 - Xcc-8004.314.1 0.22 +1.1 302,036 + Xcc-8004.314.1 0.25 -0.6 302,080 + Xcc-8004.314.1 0.27 +0.0 302,081 - Xcc-8004.314.1 0.27 +0.5 302,253 + Xcc-8004.314.1 0.33 +0.5 302,360 - Xcc-8004.314.1 0.37 +0.3 302,554 + Xcc-8004.314.1 0.44 +0.6 302,558 - Xcc-8004.314.1 0.44 -1.9 302,558 - Xcc-8004.314.1 0.44 -0.2 302,558 - Xcc-8004.314.1 0.44 -0.4 302,628 + Xcc-8004.314.1 0.47 -1.5 302,628 + Xcc-8004.314.1 0.47 -1.4 302,629 - Xcc-8004.314.1 0.47 +3.0 302,784 + Xcc-8004.314.1 0.53 -1.0 302,838 + Xcc-8004.314.1 0.55 +0.4 302,838 + Xcc-8004.314.1 0.55 +1.1 302,838 + Xcc-8004.314.1 0.55 +1.4 302,838 + Xcc-8004.314.1 0.55 +1.3 302,863 + Xcc-8004.314.1 0.56 +0.4 302,863 + Xcc-8004.314.1 0.56 +0.1 302,863 + Xcc-8004.314.1 0.56 +1.1 302,864 - Xcc-8004.314.1 0.56 -0.1 302,864 - Xcc-8004.314.1 0.56 +0.2 303,011 - Xcc-8004.314.1 0.62 -0.0 303,621 - Xcc-8004.314.1 0.84 +0.3 303,726 + Xcc-8004.314.1 0.88 +0.4 303,895 - -2.0 303,975 + +0.3 304,000 + +0.9 304,053 + Xcc-8004.315.1 0.20 -0.3 304,053 + Xcc-8004.315.1 0.20 -0.6 304,054 - Xcc-8004.315.1 0.21 -2.7 304,054 - Xcc-8004.315.1 0.21 +1.3 304,365 - -0.9 304,407 - +0.5 304,576 - Xcc-8004.316.1 0.15 -0.1
Or see this region's nucleotide sequence