Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3128.1 and Xcc-8004.3127.1 are separated by 185 nucleotides Xcc-8004.3127.1 and Xcc-8004.3129.1 overlap by 4 nucleotides Xcc-8004.3129.1 and Xcc-8004.3130.1 are separated by 18 nucleotides Xcc-8004.3130.1 and Xcc-8004.3131.1 overlap by 4 nucleotides
Xcc-8004.3128.1: Xcc-8004.3128.1 - COGs COG3737, at 3,053,869 to 3,054,243
Xcc-8004.3128.1
Xcc-8004.3127.1: Xcc-8004.3127.1 - Lipoprotein NlpD, at 3,054,429 to 3,055,211
Xcc-8004.3127.1
Xcc-8004.3129.1: Xcc-8004.3129.1 - FIG139438: lipoprotein B, at 3,055,208 to 3,055,822
Xcc-8004.3129.1
Xcc-8004.3130.1: Xcc-8004.3130.1 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 3,055,841 to 3,056,518
Xcc-8004.3130.1
Xcc-8004.3131.1: Xcc-8004.3131.1 - hypothetical protein, at 3,056,515 to 3,057,294
Xcc-8004.3131.1
Position (kb) 3055
3056 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 3054.233 kb on + strand at 3054.233 kb on + strand at 3054.233 kb on + strand at 3054.234 kb on - strand at 3054.234 kb on - strand at 3054.367 kb on + strand at 3054.372 kb on + strand at 3054.395 kb on - strand at 3054.446 kb on - strand at 3055.162 kb on - strand at 3055.350 kb on + strand, within Xcc-8004.3129.1 at 3055.429 kb on + strand, within Xcc-8004.3129.1 at 3055.429 kb on + strand, within Xcc-8004.3129.1 at 3055.430 kb on - strand, within Xcc-8004.3129.1 at 3055.453 kb on + strand, within Xcc-8004.3129.1 at 3055.454 kb on - strand, within Xcc-8004.3129.1 at 3055.605 kb on + strand, within Xcc-8004.3129.1 at 3055.605 kb on + strand, within Xcc-8004.3129.1 at 3055.605 kb on + strand, within Xcc-8004.3129.1 at 3055.605 kb on + strand, within Xcc-8004.3129.1 at 3055.606 kb on - strand, within Xcc-8004.3129.1 at 3055.606 kb on - strand, within Xcc-8004.3129.1 at 3055.800 kb on + strand at 3055.800 kb on + strand at 3055.800 kb on + strand at 3055.800 kb on + strand at 3055.801 kb on - strand at 3055.801 kb on - strand at 3055.814 kb on + strand at 3055.814 kb on + strand at 3055.815 kb on - strand at 3056.049 kb on + strand, within Xcc-8004.3130.1 at 3056.049 kb on + strand, within Xcc-8004.3130.1 at 3056.049 kb on + strand, within Xcc-8004.3130.1 at 3056.049 kb on + strand, within Xcc-8004.3130.1 at 3056.049 kb on + strand, within Xcc-8004.3130.1 at 3056.049 kb on + strand, within Xcc-8004.3130.1 at 3056.049 kb on + strand, within Xcc-8004.3130.1 at 3056.050 kb on - strand, within Xcc-8004.3130.1 at 3056.050 kb on - strand, within Xcc-8004.3130.1 at 3056.050 kb on - strand, within Xcc-8004.3130.1 at 3056.050 kb on - strand, within Xcc-8004.3130.1 at 3056.050 kb on - strand, within Xcc-8004.3130.1 at 3056.050 kb on - strand, within Xcc-8004.3130.1 at 3056.050 kb on - strand, within Xcc-8004.3130.1 at 3056.168 kb on - strand, within Xcc-8004.3130.1 at 3056.169 kb on + strand, within Xcc-8004.3130.1 at 3056.169 kb on + strand, within Xcc-8004.3130.1 at 3056.169 kb on + strand, within Xcc-8004.3130.1 at 3056.169 kb on + strand, within Xcc-8004.3130.1 at 3056.169 kb on + strand, within Xcc-8004.3130.1 at 3056.169 kb on + strand, within Xcc-8004.3130.1 at 3056.169 kb on + strand, within Xcc-8004.3130.1 at 3056.170 kb on - strand, within Xcc-8004.3130.1 at 3056.170 kb on - strand, within Xcc-8004.3130.1 at 3056.170 kb on - strand, within Xcc-8004.3130.1 at 3056.170 kb on - strand, within Xcc-8004.3130.1 at 3056.170 kb on - strand, within Xcc-8004.3130.1 at 3056.209 kb on - strand, within Xcc-8004.3130.1 at 3056.338 kb on - strand, within Xcc-8004.3130.1 at 3056.338 kb on - strand, within Xcc-8004.3130.1 at 3056.338 kb on - strand, within Xcc-8004.3130.1 at 3056.420 kb on - strand, within Xcc-8004.3130.1 at 3056.619 kb on + strand, within Xcc-8004.3131.1 at 3056.619 kb on + strand, within Xcc-8004.3131.1 at 3056.619 kb on + strand, within Xcc-8004.3131.1 at 3056.619 kb on + strand, within Xcc-8004.3131.1 at 3056.620 kb on - strand, within Xcc-8004.3131.1 at 3056.693 kb on + strand, within Xcc-8004.3131.1 at 3056.694 kb on - strand, within Xcc-8004.3131.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 3,054,233 + -0.4 3,054,233 + +0.3 3,054,233 + +0.5 3,054,234 - -0.1 3,054,234 - -1.9 3,054,367 + -0.3 3,054,372 + -1.6 3,054,395 - +0.6 3,054,446 - +0.7 3,055,162 - +1.5 3,055,350 + Xcc-8004.3129.1 0.23 -0.9 3,055,429 + Xcc-8004.3129.1 0.36 +0.6 3,055,429 + Xcc-8004.3129.1 0.36 -0.1 3,055,430 - Xcc-8004.3129.1 0.36 -0.1 3,055,453 + Xcc-8004.3129.1 0.40 -1.6 3,055,454 - Xcc-8004.3129.1 0.40 +0.8 3,055,605 + Xcc-8004.3129.1 0.65 -2.2 3,055,605 + Xcc-8004.3129.1 0.65 -1.0 3,055,605 + Xcc-8004.3129.1 0.65 -1.2 3,055,605 + Xcc-8004.3129.1 0.65 -0.5 3,055,606 - Xcc-8004.3129.1 0.65 +0.3 3,055,606 - Xcc-8004.3129.1 0.65 +0.0 3,055,800 + -0.7 3,055,800 + -1.5 3,055,800 + -0.3 3,055,800 + -1.0 3,055,801 - -1.4 3,055,801 - -0.8 3,055,814 + -0.4 3,055,814 + -1.3 3,055,815 - +0.9 3,056,049 + Xcc-8004.3130.1 0.31 -0.0 3,056,049 + Xcc-8004.3130.1 0.31 +1.9 3,056,049 + Xcc-8004.3130.1 0.31 +1.6 3,056,049 + Xcc-8004.3130.1 0.31 +3.3 3,056,049 + Xcc-8004.3130.1 0.31 -0.8 3,056,049 + Xcc-8004.3130.1 0.31 +2.0 3,056,049 + Xcc-8004.3130.1 0.31 -0.6 3,056,050 - Xcc-8004.3130.1 0.31 +0.4 3,056,050 - Xcc-8004.3130.1 0.31 +1.3 3,056,050 - Xcc-8004.3130.1 0.31 +0.4 3,056,050 - Xcc-8004.3130.1 0.31 -0.3 3,056,050 - Xcc-8004.3130.1 0.31 +1.3 3,056,050 - Xcc-8004.3130.1 0.31 +0.5 3,056,050 - Xcc-8004.3130.1 0.31 +2.7 3,056,168 - Xcc-8004.3130.1 0.48 -0.8 3,056,169 + Xcc-8004.3130.1 0.48 +0.9 3,056,169 + Xcc-8004.3130.1 0.48 -0.4 3,056,169 + Xcc-8004.3130.1 0.48 -1.2 3,056,169 + Xcc-8004.3130.1 0.48 -1.1 3,056,169 + Xcc-8004.3130.1 0.48 +4.6 3,056,169 + Xcc-8004.3130.1 0.48 -0.1 3,056,169 + Xcc-8004.3130.1 0.48 +0.3 3,056,170 - Xcc-8004.3130.1 0.49 -0.8 3,056,170 - Xcc-8004.3130.1 0.49 +0.5 3,056,170 - Xcc-8004.3130.1 0.49 +1.0 3,056,170 - Xcc-8004.3130.1 0.49 -0.6 3,056,170 - Xcc-8004.3130.1 0.49 +0.3 3,056,209 - Xcc-8004.3130.1 0.54 -0.5 3,056,338 - Xcc-8004.3130.1 0.73 +0.3 3,056,338 - Xcc-8004.3130.1 0.73 +0.8 3,056,338 - Xcc-8004.3130.1 0.73 +0.8 3,056,420 - Xcc-8004.3130.1 0.85 +0.1 3,056,619 + Xcc-8004.3131.1 0.13 +0.5 3,056,619 + Xcc-8004.3131.1 0.13 +0.1 3,056,619 + Xcc-8004.3131.1 0.13 +0.9 3,056,619 + Xcc-8004.3131.1 0.13 +0.1 3,056,620 - Xcc-8004.3131.1 0.13 -0.8 3,056,693 + Xcc-8004.3131.1 0.23 +0.7 3,056,694 - Xcc-8004.3131.1 0.23 +0.6
Or see this region's nucleotide sequence