Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2862.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,773,140	+				-0.1
2,773,140	+				+0.9
2,773,140	+				-0.3
2,773,140	+				-0.1
2,773,141	-				+0.7
2,773,141	-				+0.5
2,773,207	+				+0.8
2,773,207	+				-0.1
2,773,208	-				-1.0
2,773,210	+				-0.2
2,773,211	-				-2.7
2,773,211	-				-1.2
2,773,211	-				-2.7
2,773,211	-				+0.3
2,773,211	-				+1.6
2,773,211	-				-0.6
2,773,211	-				+1.5
2,773,216	+				-0.5
2,773,216	+				+1.3
2,773,216	+				-0.3
2,773,216	+				-0.5
2,773,216	+				+0.2
2,773,216	+				+0.5
2,773,216	+				-0.2
2,773,216	+				-0.2
2,773,216	+				+0.4
2,773,217	-				+0.4
2,773,217	-				-1.4
2,773,217	-				+1.0
2,773,217	-				-0.2
2,773,217	-				-0.5
2,773,217	-				-0.8
2,773,217	-				+0.5
2,773,217	-				+0.8
2,773,253	+				+0.2
2,773,253	+				-0.0
2,773,254	-				-0.5
2,773,556	+				-1.0
2,773,556	+				-0.2
2,773,556	+				+0.4
2,773,556	+				-0.0
2,773,557	-				+1.7
2,773,557	-				+1.3
2,773,557	-				-1.2
2,773,557	-				-0.3
2,773,557	-				-1.2
2,773,557	-				+0.4
2,773,557	-				-0.1
2,773,764	+		Xcc-8004.2861.1	0.60	+0.5
2,773,764	+		Xcc-8004.2861.1	0.60	-0.3
2,773,765	-		Xcc-8004.2861.1	0.60	+1.3
2,774,538	+		Xcc-8004.2862.1	0.30	-1.0
2,774,538	+		Xcc-8004.2862.1	0.30	+0.6
2,774,539	-		Xcc-8004.2862.1	0.30	+1.7
2,774,539	-		Xcc-8004.2862.1	0.30	-0.1
2,774,539	-		Xcc-8004.2862.1	0.30	-2.2
2,774,936	+		Xcc-8004.2862.1	0.50	-0.1
2,775,585	+		Xcc-8004.2862.1	0.82	+0.1
2,775,585	+		Xcc-8004.2862.1	0.82	+1.3
2,775,585	+		Xcc-8004.2862.1	0.82	-1.5
2,775,585	+		Xcc-8004.2862.1	0.82	+0.2
2,775,669	+		Xcc-8004.2862.1	0.86	-2.8
2,775,669	+		Xcc-8004.2862.1	0.86	+0.4
2,775,670	-		Xcc-8004.2862.1	0.86	+0.3
2,775,696	+		Xcc-8004.2862.1	0.87	-1.6
2,775,696	+		Xcc-8004.2862.1	0.87	-0.4
2,775,696	+		Xcc-8004.2862.1	0.87	-1.5
2,775,696	+		Xcc-8004.2862.1	0.87	+0.5
2,775,696	+		Xcc-8004.2862.1	0.87	-1.6
2,775,697	-		Xcc-8004.2862.1	0.87	+0.9
2,775,697	-		Xcc-8004.2862.1	0.87	+0.4
2,775,697	-		Xcc-8004.2862.1	0.87	-0.0
2,775,697	-		Xcc-8004.2862.1	0.87	-0.6
2,775,699	+		Xcc-8004.2862.1	0.88	+0.3
2,775,700	-		Xcc-8004.2862.1	0.88	-0.4
2,775,834	+				-1.7
2,775,945	+				+0.1
2,775,979	+				+0.8
2,775,980	-				+1.7
2,776,085	+				-0.1
2,776,086	-				-0.2
2,776,086	-				-0.0
2,776,086	-				+0.6
2,776,117	+				-0.4
2,776,118	-				-1.3
2,776,141	+				+0.8
2,776,141	+				-0.1
2,776,141	+				+0.3
2,776,142	-				-0.4
2,776,142	-				-1.1
2,776,195	+				-1.2
2,776,195	+				+1.1
2,776,196	-				+0.6
2,776,212	-				+0.2
2,776,212	-				-0.5
2,776,367	-				+0.2
2,776,474	+				-0.2
2,776,474	+				-0.8
2,776,474	+				-0.6
2,776,474	+				-0.3
2,776,474	+				-0.8
2,776,474	+				-0.2
2,776,474	+				-0.2
2,776,475	-				-0.5
2,776,475	-				+0.9
2,776,475	-				+0.3
2,776,475	-				-1.1
2,776,503	+				-0.5
2,776,503	+				-1.4
2,776,503	+				+1.5
2,776,504	-				+1.1
2,776,504	-				+1.2
2,776,553	+				+1.8
2,776,611	+				-1.6
2,776,611	+				+0.3
2,776,612	-				+0.6
2,776,625	+				-0.8
2,776,625	+				+0.4
2,776,625	+				-1.1
2,776,689	+		Xcc-8004.2864.1	0.12	+1.3
2,776,690	-		Xcc-8004.2864.1	0.12	-0.2
2,776,720	+		Xcc-8004.2864.1	0.14	-0.4
2,776,720	+		Xcc-8004.2864.1	0.14	-1.8
2,776,720	+		Xcc-8004.2864.1	0.14	-0.1
2,776,720	+		Xcc-8004.2864.1	0.14	-0.6
2,776,720	+		Xcc-8004.2864.1	0.14	+1.3
2,776,721	-		Xcc-8004.2864.1	0.14	+0.4
2,776,721	-		Xcc-8004.2864.1	0.14	-1.0
2,776,721	-		Xcc-8004.2864.1	0.14	-1.5
2,776,721	-		Xcc-8004.2864.1	0.14	+0.8
2,776,764	+		Xcc-8004.2864.1	0.16	+1.4
2,776,765	-		Xcc-8004.2864.1	0.16	+0.6
2,776,765	-		Xcc-8004.2864.1	0.16	-2.2