Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2676.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2675.1 and Xcc-8004.2676.1 are separated by 107 nucleotidesXcc-8004.2676.1 and Xcc-8004.2677.1 are separated by 390 nucleotides Xcc-8004.2675.1: Xcc-8004.2675.1 - Metallopeptidase, at 2,575,200 to 2,577,434 Xcc-8004.2675.1 Xcc-8004.2676.1: Xcc-8004.2676.1 - Succinoglycan biosynthesis protein, at 2,577,542 to 2,578,225 Xcc-8004.2676.1 Xcc-8004.2677.1: Xcc-8004.2677.1 - Oxidoreductase, at 2,578,616 to 2,579,653 Xcc-8004.2677.1 Position (kb) 2577 2578 2579Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2576.694 kb on + strand, within Xcc-8004.2675.1at 2576.694 kb on + strand, within Xcc-8004.2675.1at 2576.695 kb on - strand, within Xcc-8004.2675.1at 2576.698 kb on + strand, within Xcc-8004.2675.1at 2576.698 kb on + strand, within Xcc-8004.2675.1at 2576.698 kb on + strand, within Xcc-8004.2675.1at 2576.699 kb on - strand, within Xcc-8004.2675.1at 2576.699 kb on - strand, within Xcc-8004.2675.1at 2576.699 kb on - strand, within Xcc-8004.2675.1at 2576.730 kb on + strand, within Xcc-8004.2675.1at 2576.730 kb on + strand, within Xcc-8004.2675.1at 2576.730 kb on + strand, within Xcc-8004.2675.1at 2576.730 kb on + strand, within Xcc-8004.2675.1at 2576.730 kb on + strand, within Xcc-8004.2675.1at 2576.731 kb on - strand, within Xcc-8004.2675.1at 2576.731 kb on - strand, within Xcc-8004.2675.1at 2576.731 kb on - strand, within Xcc-8004.2675.1at 2576.731 kb on - strand, within Xcc-8004.2675.1at 2576.731 kb on - strand, within Xcc-8004.2675.1at 2576.731 kb on - strand, within Xcc-8004.2675.1at 2576.731 kb on - strand, within Xcc-8004.2675.1at 2576.812 kb on - strand, within Xcc-8004.2675.1at 2576.812 kb on - strand, within Xcc-8004.2675.1at 2576.812 kb on - strand, within Xcc-8004.2675.1at 2576.898 kb on + strand, within Xcc-8004.2675.1at 2577.060 kb on + strand, within Xcc-8004.2675.1at 2577.060 kb on + strand, within Xcc-8004.2675.1at 2577.146 kb on + strand, within Xcc-8004.2675.1at 2577.146 kb on + strand, within Xcc-8004.2675.1at 2577.146 kb on + strand, within Xcc-8004.2675.1at 2577.146 kb on + strand, within Xcc-8004.2675.1at 2577.146 kb on + strand, within Xcc-8004.2675.1at 2577.147 kb on - strand, within Xcc-8004.2675.1at 2577.147 kb on - strand, within Xcc-8004.2675.1at 2577.147 kb on - strand, within Xcc-8004.2675.1at 2577.147 kb on - strand, within Xcc-8004.2675.1at 2577.147 kb on - strand, within Xcc-8004.2675.1at 2577.175 kb on + strand, within Xcc-8004.2675.1at 2577.175 kb on + strand, within Xcc-8004.2675.1at 2577.175 kb on + strand, within Xcc-8004.2675.1at 2577.176 kb on - strand, within Xcc-8004.2675.1at 2577.176 kb on - strand, within Xcc-8004.2675.1at 2577.176 kb on - strand, within Xcc-8004.2675.1at 2577.176 kb on - strand, within Xcc-8004.2675.1at 2577.176 kb on - strand, within Xcc-8004.2675.1at 2577.176 kb on - strand, within Xcc-8004.2675.1at 2577.176 kb on - strand, within Xcc-8004.2675.1at 2577.176 kb on - strand, within Xcc-8004.2675.1at 2577.215 kb on + strandat 2577.216 kb on - strandat 2577.216 kb on - strandat 2577.319 kb on - strandat 2577.319 kb on - strandat 2577.351 kb on - strandat 2577.351 kb on - strandat 2577.432 kb on + strandat 2577.432 kb on + strandat 2577.432 kb on + strandat 2577.432 kb on + strandat 2577.433 kb on - strandat 2577.433 kb on - strandat 2577.433 kb on - strandat 2577.440 kb on + strandat 2577.440 kb on + strandat 2577.440 kb on + strandat 2577.440 kb on + strandat 2577.440 kb on + strandat 2577.440 kb on + strandat 2577.441 kb on - strandat 2577.441 kb on - strandat 2577.441 kb on - strandat 2577.441 kb on - strandat 2577.441 kb on - strandat 2577.441 kb on - strandat 2577.503 kb on + strandat 2577.504 kb on - strandat 2577.504 kb on - strandat 2577.637 kb on - strand, within Xcc-8004.2676.1at 2577.772 kb on - strand, within Xcc-8004.2676.1at 2577.858 kb on + strand, within Xcc-8004.2676.1at 2577.859 kb on - strand, within Xcc-8004.2676.1at 2577.859 kb on - strand, within Xcc-8004.2676.1at 2577.859 kb on - strand, within Xcc-8004.2676.1at 2577.859 kb on - strand, within Xcc-8004.2676.1at 2577.867 kb on + strand, within Xcc-8004.2676.1at 2577.958 kb on + strand, within Xcc-8004.2676.1at 2577.959 kb on - strand, within Xcc-8004.2676.1at 2577.959 kb on - strand, within Xcc-8004.2676.1at 2577.977 kb on + strand, within Xcc-8004.2676.1at 2577.977 kb on + strand, within Xcc-8004.2676.1at 2577.977 kb on + strand, within Xcc-8004.2676.1at 2577.978 kb on - strand, within Xcc-8004.2676.1at 2577.978 kb on - strand, within Xcc-8004.2676.1at 2577.996 kb on + strand, within Xcc-8004.2676.1at 2577.996 kb on + strand, within Xcc-8004.2676.1at 2577.996 kb on + strand, within Xcc-8004.2676.1at 2577.996 kb on + strand, within Xcc-8004.2676.1at 2577.996 kb on + strand, within Xcc-8004.2676.1at 2577.996 kb on + strand, within Xcc-8004.2676.1at 2577.996 kb on + strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2577.997 kb on - strand, within Xcc-8004.2676.1at 2578.198 kb on + strandat 2578.243 kb on + strandat 2578.243 kb on + strandat 2578.243 kb on + strandat 2578.243 kb on + strandat 2578.243 kb on + strandat 2578.244 kb on - strandat 2578.244 kb on - strandat 2578.244 kb on - strandat 2578.377 kb on + strandat 2578.377 kb on + strandat 2578.412 kb on - strandat 2578.412 kb on - strandat 2578.422 kb on - strandat 2578.422 kb on - strandat 2578.535 kb on + strandat 2578.554 kb on + strandat 2578.554 kb on + strandat 2578.554 kb on + strandat 2578.618 kb on - strandat 2578.762 kb on - strand, within Xcc-8004.2677.1at 2578.890 kb on + strand, within Xcc-8004.2677.1at 2578.890 kb on + strand, within Xcc-8004.2677.1at 2578.890 kb on + strand, within Xcc-8004.2677.1at 2578.890 kb on + strand, within Xcc-8004.2677.1at 2578.890 kb on + strand, within Xcc-8004.2677.1at 2578.890 kb on + strand, within Xcc-8004.2677.1at 2578.891 kb on - strand, within Xcc-8004.2677.1at 2578.891 kb on - strand, within Xcc-8004.2677.1at 2578.903 kb on + strand, within Xcc-8004.2677.1at 2578.903 kb on + strand, within Xcc-8004.2677.1at 2578.903 kb on + strand, within Xcc-8004.2677.1at 2578.904 kb on - strand, within Xcc-8004.2677.1at 2578.904 kb on - strand, within Xcc-8004.2677.1at 2579.061 kb on + strand, within Xcc-8004.2677.1at 2579.061 kb on + strand, within Xcc-8004.2677.1at 2579.061 kb on + strand, within Xcc-8004.2677.1at 2579.061 kb on + strand, within Xcc-8004.2677.1at 2579.061 kb on + strand, within Xcc-8004.2677.1at 2579.061 kb on + strand, within Xcc-8004.2677.1at 2579.061 kb on + strand, within Xcc-8004.2677.1at 2579.061 kb on + strand, within Xcc-8004.2677.1at 2579.062 kb on - strand, within Xcc-8004.2677.1at 2579.062 kb on - strand, within Xcc-8004.2677.1at 2579.062 kb on - strand, within Xcc-8004.2677.1at 2579.062 kb on - strand, within Xcc-8004.2677.1at 2579.062 kb on - strand, within Xcc-8004.2677.1at 2579.062 kb on - strand, within Xcc-8004.2677.1at 2579.062 kb on - strand, within Xcc-8004.2677.1at 2579.062 kb on - strand, within Xcc-8004.2677.1at 2579.062 kb on - strand, within Xcc-8004.2677.1at 2579.062 kb on - strand, within Xcc-8004.2677.1at 2579.223 kb on + strand, within Xcc-8004.2677.1at 2579.224 kb on - strand, within Xcc-8004.2677.1at 2579.224 kb on - strand, within Xcc-8004.2677.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,576,694 + Xcc-8004.2675.1 0.67 -1.8
2,576,694 + Xcc-8004.2675.1 0.67 -1.7
2,576,695 - Xcc-8004.2675.1 0.67 -0.3
2,576,698 + Xcc-8004.2675.1 0.67 -0.8
2,576,698 + Xcc-8004.2675.1 0.67 +0.6
2,576,698 + Xcc-8004.2675.1 0.67 -0.2
2,576,699 - Xcc-8004.2675.1 0.67 +0.5
2,576,699 - Xcc-8004.2675.1 0.67 +0.3
2,576,699 - Xcc-8004.2675.1 0.67 +0.3
2,576,730 + Xcc-8004.2675.1 0.68 -0.5
2,576,730 + Xcc-8004.2675.1 0.68 -0.9
2,576,730 + Xcc-8004.2675.1 0.68 +2.0
2,576,730 + Xcc-8004.2675.1 0.68 -0.7
2,576,730 + Xcc-8004.2675.1 0.68 +0.2
2,576,731 - Xcc-8004.2675.1 0.69 -1.0
2,576,731 - Xcc-8004.2675.1 0.69 -0.7
2,576,731 - Xcc-8004.2675.1 0.69 -0.9
2,576,731 - Xcc-8004.2675.1 0.69 +0.7
2,576,731 - Xcc-8004.2675.1 0.69 -0.1
2,576,731 - Xcc-8004.2675.1 0.69 +0.3
2,576,731 - Xcc-8004.2675.1 0.69 +0.8
2,576,812 - Xcc-8004.2675.1 0.72 -0.2
2,576,812 - Xcc-8004.2675.1 0.72 +0.9
2,576,812 - Xcc-8004.2675.1 0.72 +0.7
2,576,898 + Xcc-8004.2675.1 0.76 -0.8
2,577,060 + Xcc-8004.2675.1 0.83 +0.1
2,577,060 + Xcc-8004.2675.1 0.83 -0.9
2,577,146 + Xcc-8004.2675.1 0.87 +1.8
2,577,146 + Xcc-8004.2675.1 0.87 +0.8
2,577,146 + Xcc-8004.2675.1 0.87 +0.0
2,577,146 + Xcc-8004.2675.1 0.87 -0.1
2,577,146 + Xcc-8004.2675.1 0.87 +0.0
2,577,147 - Xcc-8004.2675.1 0.87 -1.8
2,577,147 - Xcc-8004.2675.1 0.87 -1.5
2,577,147 - Xcc-8004.2675.1 0.87 +0.6
2,577,147 - Xcc-8004.2675.1 0.87 -0.2
2,577,147 - Xcc-8004.2675.1 0.87 -0.5
2,577,175 + Xcc-8004.2675.1 0.88 +1.3
2,577,175 + Xcc-8004.2675.1 0.88 -1.8
2,577,175 + Xcc-8004.2675.1 0.88 +3.1
2,577,176 - Xcc-8004.2675.1 0.88 -0.4
2,577,176 - Xcc-8004.2675.1 0.88 +0.9
2,577,176 - Xcc-8004.2675.1 0.88 -0.0
2,577,176 - Xcc-8004.2675.1 0.88 -0.2
2,577,176 - Xcc-8004.2675.1 0.88 +1.2
2,577,176 - Xcc-8004.2675.1 0.88 -0.7
2,577,176 - Xcc-8004.2675.1 0.88 +0.0
2,577,176 - Xcc-8004.2675.1 0.88 -0.4
2,577,215 + -0.1
2,577,216 - +0.6
2,577,216 - -1.6
2,577,319 - -0.3
2,577,319 - -0.0
2,577,351 - -0.6
2,577,351 - +0.3
2,577,432 + +0.8
2,577,432 + -0.4
2,577,432 + +0.0
2,577,432 + +0.0
2,577,433 - -0.8
2,577,433 - +0.7
2,577,433 - +0.3
2,577,440 + +1.5
2,577,440 + +0.8
2,577,440 + -1.2
2,577,440 + -0.5
2,577,440 + -0.3
2,577,440 + -1.2
2,577,441 - -1.1
2,577,441 - +0.4
2,577,441 - -1.4
2,577,441 - +0.3
2,577,441 - -1.5
2,577,441 - -1.6
2,577,503 + -0.4
2,577,504 - -1.0
2,577,504 - -2.1
2,577,637 - Xcc-8004.2676.1 0.14 +0.3
2,577,772 - Xcc-8004.2676.1 0.34 -0.1
2,577,858 + Xcc-8004.2676.1 0.46 -0.4
2,577,859 - Xcc-8004.2676.1 0.46 -1.0
2,577,859 - Xcc-8004.2676.1 0.46 -1.5
2,577,859 - Xcc-8004.2676.1 0.46 -0.8
2,577,859 - Xcc-8004.2676.1 0.46 +0.3
2,577,867 + Xcc-8004.2676.1 0.48 -0.2
2,577,958 + Xcc-8004.2676.1 0.61 -0.4
2,577,959 - Xcc-8004.2676.1 0.61 -0.4
2,577,959 - Xcc-8004.2676.1 0.61 -0.5
2,577,977 + Xcc-8004.2676.1 0.64 +0.3
2,577,977 + Xcc-8004.2676.1 0.64 -0.6
2,577,977 + Xcc-8004.2676.1 0.64 +0.6
2,577,978 - Xcc-8004.2676.1 0.64 -1.4
2,577,978 - Xcc-8004.2676.1 0.64 +1.0
2,577,996 + Xcc-8004.2676.1 0.66 +1.4
2,577,996 + Xcc-8004.2676.1 0.66 -2.2
2,577,996 + Xcc-8004.2676.1 0.66 +0.3
2,577,996 + Xcc-8004.2676.1 0.66 -0.9
2,577,996 + Xcc-8004.2676.1 0.66 -0.1
2,577,996 + Xcc-8004.2676.1 0.66 -1.2
2,577,996 + Xcc-8004.2676.1 0.66 +0.3
2,577,997 - Xcc-8004.2676.1 0.67 +1.2
2,577,997 - Xcc-8004.2676.1 0.67 -1.9
2,577,997 - Xcc-8004.2676.1 0.67 -0.4
2,577,997 - Xcc-8004.2676.1 0.67 -1.0
2,577,997 - Xcc-8004.2676.1 0.67 -0.6
2,577,997 - Xcc-8004.2676.1 0.67 -0.9
2,577,997 - Xcc-8004.2676.1 0.67 +0.1
2,577,997 - Xcc-8004.2676.1 0.67 -1.2
2,577,997 - Xcc-8004.2676.1 0.67 +0.8
2,577,997 - Xcc-8004.2676.1 0.67 -0.1
2,577,997 - Xcc-8004.2676.1 0.67 -0.8
2,577,997 - Xcc-8004.2676.1 0.67 -1.4
2,577,997 - Xcc-8004.2676.1 0.67 +0.2
2,578,198 + -1.8
2,578,243 + -1.0
2,578,243 + -1.7
2,578,243 + -0.5
2,578,243 + +1.2
2,578,243 + -0.8
2,578,244 - +0.5
2,578,244 - -0.4
2,578,244 - -0.0
2,578,377 + +0.8
2,578,377 + -0.3
2,578,412 - -0.0
2,578,412 - -0.9
2,578,422 - -0.1
2,578,422 - -0.2
2,578,535 + -1.0
2,578,554 + +0.4
2,578,554 + -0.5
2,578,554 + +0.2
2,578,618 - +1.3
2,578,762 - Xcc-8004.2677.1 0.14 -0.2
2,578,890 + Xcc-8004.2677.1 0.26 +0.0
2,578,890 + Xcc-8004.2677.1 0.26 -0.7
2,578,890 + Xcc-8004.2677.1 0.26 -0.9
2,578,890 + Xcc-8004.2677.1 0.26 +0.4
2,578,890 + Xcc-8004.2677.1 0.26 -1.6
2,578,890 + Xcc-8004.2677.1 0.26 -0.5
2,578,891 - Xcc-8004.2677.1 0.26 -0.2
2,578,891 - Xcc-8004.2677.1 0.26 +0.3
2,578,903 + Xcc-8004.2677.1 0.28 -1.3
2,578,903 + Xcc-8004.2677.1 0.28 -1.1
2,578,903 + Xcc-8004.2677.1 0.28 -0.5
2,578,904 - Xcc-8004.2677.1 0.28 -0.3
2,578,904 - Xcc-8004.2677.1 0.28 +1.5
2,579,061 + Xcc-8004.2677.1 0.43 -0.3
2,579,061 + Xcc-8004.2677.1 0.43 +0.8
2,579,061 + Xcc-8004.2677.1 0.43 -0.3
2,579,061 + Xcc-8004.2677.1 0.43 -0.9
2,579,061 + Xcc-8004.2677.1 0.43 +0.7
2,579,061 + Xcc-8004.2677.1 0.43 -1.5
2,579,061 + Xcc-8004.2677.1 0.43 -1.0
2,579,061 + Xcc-8004.2677.1 0.43 +0.0
2,579,062 - Xcc-8004.2677.1 0.43 -0.1
2,579,062 - Xcc-8004.2677.1 0.43 -0.0
2,579,062 - Xcc-8004.2677.1 0.43 +1.4
2,579,062 - Xcc-8004.2677.1 0.43 +0.3
2,579,062 - Xcc-8004.2677.1 0.43 +0.4
2,579,062 - Xcc-8004.2677.1 0.43 -1.0
2,579,062 - Xcc-8004.2677.1 0.43 +2.4
2,579,062 - Xcc-8004.2677.1 0.43 +1.0
2,579,062 - Xcc-8004.2677.1 0.43 +0.5
2,579,062 - Xcc-8004.2677.1 0.43 -1.4
2,579,223 + Xcc-8004.2677.1 0.58 +1.9
2,579,224 - Xcc-8004.2677.1 0.59 +0.7
2,579,224 - Xcc-8004.2677.1 0.59 +0.4

Or see this region's nucleotide sequence