Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.234.1 and Xcc-8004.235.1 are separated by 270 nucleotides Xcc-8004.235.1 and Xcc-8004.236.1 are separated by 116 nucleotides Xcc-8004.236.1 and Xcc-8004.237.1 are separated by 54 nucleotides
Xcc-8004.234.1: Xcc-8004.234.1 - cardiolipin synthase, at 230,670 to 232,652
Xcc-8004.234.1
Xcc-8004.235.1: Xcc-8004.235.1 - ComA operon protein 2, at 232,923 to 233,351
Xcc-8004.235.1
Xcc-8004.236.1: Xcc-8004.236.1 - 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51), at 233,468 to 234,271
Xcc-8004.236.1
Xcc-8004.237.1: Xcc-8004.237.1 - FIG01211085: hypothetical protein, at 234,326 to 235,312
Xcc-8004.237.1
Position (kb) 232
233
234 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 231.933 kb on + strand, within Xcc-8004.234.1 at 231.934 kb on - strand, within Xcc-8004.234.1 at 232.044 kb on - strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.272 kb on + strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.273 kb on - strand, within Xcc-8004.234.1 at 232.413 kb on + strand, within Xcc-8004.234.1 at 232.413 kb on + strand, within Xcc-8004.234.1 at 232.413 kb on + strand, within Xcc-8004.234.1 at 232.414 kb on - strand, within Xcc-8004.234.1 at 232.482 kb on + strand at 232.483 kb on - strand at 232.483 kb on - strand at 232.483 kb on - strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.551 kb on + strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.552 kb on - strand at 232.676 kb on + strand at 232.676 kb on + strand at 232.676 kb on + strand at 232.677 kb on - strand at 232.677 kb on - strand at 232.677 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 232.833 kb on - strand at 233.052 kb on - strand, within Xcc-8004.235.1 at 233.071 kb on - strand, within Xcc-8004.235.1 at 233.071 kb on - strand, within Xcc-8004.235.1 at 233.147 kb on + strand, within Xcc-8004.235.1 at 233.148 kb on - strand, within Xcc-8004.235.1 at 233.148 kb on - strand, within Xcc-8004.235.1 at 233.148 kb on - strand, within Xcc-8004.235.1 at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.428 kb on + strand at 233.429 kb on - strand at 233.429 kb on - strand at 233.429 kb on - strand at 233.528 kb on + strand at 233.529 kb on - strand at 233.529 kb on - strand at 234.133 kb on + strand, within Xcc-8004.236.1 at 234.133 kb on + strand, within Xcc-8004.236.1 at 234.134 kb on - strand, within Xcc-8004.236.1 at 234.134 kb on - strand, within Xcc-8004.236.1 at 234.342 kb on - strand at 234.342 kb on - strand at 234.342 kb on - strand at 234.342 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 231,933 + Xcc-8004.234.1 0.64 -0.1 231,934 - Xcc-8004.234.1 0.64 +0.1 232,044 - Xcc-8004.234.1 0.69 -0.4 232,272 + Xcc-8004.234.1 0.81 -1.3 232,272 + Xcc-8004.234.1 0.81 +1.0 232,272 + Xcc-8004.234.1 0.81 -0.5 232,272 + Xcc-8004.234.1 0.81 +3.0 232,272 + Xcc-8004.234.1 0.81 -0.3 232,272 + Xcc-8004.234.1 0.81 -1.1 232,273 - Xcc-8004.234.1 0.81 +0.4 232,273 - Xcc-8004.234.1 0.81 +1.6 232,273 - Xcc-8004.234.1 0.81 +0.0 232,273 - Xcc-8004.234.1 0.81 -0.2 232,413 + Xcc-8004.234.1 0.88 -1.1 232,413 + Xcc-8004.234.1 0.88 +2.0 232,413 + Xcc-8004.234.1 0.88 +0.3 232,414 - Xcc-8004.234.1 0.88 -2.6 232,482 + -1.3 232,483 - +0.4 232,483 - -1.0 232,483 - +1.0 232,551 + +0.3 232,551 + +0.6 232,551 + +1.4 232,551 + +1.0 232,551 + +1.0 232,551 + +1.4 232,551 + -0.7 232,551 + -1.4 232,552 - -0.7 232,552 - +0.3 232,552 - -0.2 232,552 - -0.7 232,552 - +0.2 232,552 - -0.4 232,552 - +0.3 232,552 - -0.7 232,552 - -1.6 232,676 + -2.0 232,676 + +0.4 232,676 + +0.9 232,677 - +0.0 232,677 - +0.6 232,677 - +0.6 232,833 - -1.0 232,833 - -1.4 232,833 - -0.2 232,833 - -2.3 232,833 - -0.4 232,833 - -0.7 232,833 - +0.2 233,052 - Xcc-8004.235.1 0.30 -0.3 233,071 - Xcc-8004.235.1 0.34 +3.0 233,071 - Xcc-8004.235.1 0.34 +1.5 233,147 + Xcc-8004.235.1 0.52 -0.6 233,148 - Xcc-8004.235.1 0.52 -0.7 233,148 - Xcc-8004.235.1 0.52 +0.4 233,148 - Xcc-8004.235.1 0.52 -1.5 233,428 + +0.6 233,428 + -1.2 233,428 + +0.6 233,428 + +0.1 233,428 + -0.7 233,428 + -0.9 233,428 + +0.6 233,429 - +1.4 233,429 - -0.7 233,429 - -1.3 233,528 + -1.7 233,529 - +4.6 233,529 - +0.1 234,133 + Xcc-8004.236.1 0.83 +0.2 234,133 + Xcc-8004.236.1 0.83 +0.4 234,134 - Xcc-8004.236.1 0.83 +0.4 234,134 - Xcc-8004.236.1 0.83 +0.6 234,342 - -0.3 234,342 - -2.4 234,342 - -1.7 234,342 - -0.8
Or see this region's nucleotide sequence