Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2347.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2345.1 and Xcc-8004.2346.1 are separated by 76 nucleotidesXcc-8004.2346.1 and Xcc-8004.2347.1 overlap by 4 nucleotidesXcc-8004.2347.1 and Xcc-8004.2348.1 are separated by 197 nucleotides Xcc-8004.2345.1: Xcc-8004.2345.1 - Cytochrome c-type biogenesis protein CcmC, putative heme lyase for CcmE, at 2,291,950 to 2,292,699 Xcc-8004.2345.1 Xcc-8004.2346.1: Xcc-8004.2346.1 - ABC transporter involved in cytochrome c biogenesis, CcmB subunit, at 2,292,776 to 2,293,471 Xcc-8004.2346.1 Xcc-8004.2347.1: Xcc-8004.2347.1 - ABC transporter involved in cytochrome c biogenesis, ATPase component CcmA, at 2,293,468 to 2,294,112 Xcc-8004.2347.1 Xcc-8004.2348.1: Xcc-8004.2348.1 - hypothetical protein, at 2,294,310 to 2,295,458 Xcc-8004.2348.1 Position (kb) 2293 2294 2295Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2292.518 kb on + strand, within Xcc-8004.2345.1at 2292.519 kb on - strand, within Xcc-8004.2345.1at 2292.615 kb on - strand, within Xcc-8004.2345.1at 2292.721 kb on - strandat 2292.933 kb on + strand, within Xcc-8004.2346.1at 2292.933 kb on + strand, within Xcc-8004.2346.1at 2292.934 kb on - strand, within Xcc-8004.2346.1at 2292.934 kb on - strand, within Xcc-8004.2346.1at 2292.934 kb on - strand, within Xcc-8004.2346.1at 2293.521 kb on - strandat 2293.521 kb on - strandat 2293.620 kb on - strand, within Xcc-8004.2347.1at 2294.173 kb on - strandat 2294.173 kb on - strandat 2294.185 kb on + strandat 2294.271 kb on + strandat 2294.272 kb on - strandat 2294.272 kb on - strandat 2294.481 kb on + strand, within Xcc-8004.2348.1at 2294.544 kb on + strand, within Xcc-8004.2348.1at 2294.544 kb on + strand, within Xcc-8004.2348.1at 2294.544 kb on + strand, within Xcc-8004.2348.1at 2294.545 kb on - strand, within Xcc-8004.2348.1at 2294.667 kb on + strand, within Xcc-8004.2348.1at 2294.676 kb on + strand, within Xcc-8004.2348.1at 2294.676 kb on + strand, within Xcc-8004.2348.1at 2294.907 kb on + strand, within Xcc-8004.2348.1at 2294.907 kb on + strand, within Xcc-8004.2348.1at 2294.908 kb on - strand, within Xcc-8004.2348.1at 2294.908 kb on - strand, within Xcc-8004.2348.1at 2294.908 kb on - strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.006 kb on + strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.007 kb on - strand, within Xcc-8004.2348.1at 2295.034 kb on - strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.084 kb on + strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1at 2295.085 kb on - strand, within Xcc-8004.2348.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,292,518 + Xcc-8004.2345.1 0.76 +1.1
2,292,519 - Xcc-8004.2345.1 0.76 +0.8
2,292,615 - Xcc-8004.2345.1 0.89 +1.5
2,292,721 - -0.4
2,292,933 + Xcc-8004.2346.1 0.23 +0.5
2,292,933 + Xcc-8004.2346.1 0.23 -1.3
2,292,934 - Xcc-8004.2346.1 0.23 +0.3
2,292,934 - Xcc-8004.2346.1 0.23 -0.7
2,292,934 - Xcc-8004.2346.1 0.23 +3.1
2,293,521 - -0.3
2,293,521 - -1.0
2,293,620 - Xcc-8004.2347.1 0.24 +0.8
2,294,173 - +0.4
2,294,173 - +1.4
2,294,185 + -1.0
2,294,271 + +0.4
2,294,272 - -0.2
2,294,272 - +0.0
2,294,481 + Xcc-8004.2348.1 0.15 +0.9
2,294,544 + Xcc-8004.2348.1 0.20 +1.5
2,294,544 + Xcc-8004.2348.1 0.20 +0.5
2,294,544 + Xcc-8004.2348.1 0.20 -1.1
2,294,545 - Xcc-8004.2348.1 0.20 +1.6
2,294,667 + Xcc-8004.2348.1 0.31 -3.1
2,294,676 + Xcc-8004.2348.1 0.32 -0.2
2,294,676 + Xcc-8004.2348.1 0.32 -0.9
2,294,907 + Xcc-8004.2348.1 0.52 -0.0
2,294,907 + Xcc-8004.2348.1 0.52 -2.0
2,294,908 - Xcc-8004.2348.1 0.52 +0.1
2,294,908 - Xcc-8004.2348.1 0.52 -0.0
2,294,908 - Xcc-8004.2348.1 0.52 +0.5
2,295,006 + Xcc-8004.2348.1 0.61 -0.9
2,295,006 + Xcc-8004.2348.1 0.61 -0.2
2,295,006 + Xcc-8004.2348.1 0.61 -0.1
2,295,006 + Xcc-8004.2348.1 0.61 +0.9
2,295,007 - Xcc-8004.2348.1 0.61 +0.5
2,295,007 - Xcc-8004.2348.1 0.61 +0.6
2,295,007 - Xcc-8004.2348.1 0.61 -0.0
2,295,007 - Xcc-8004.2348.1 0.61 -2.3
2,295,007 - Xcc-8004.2348.1 0.61 +1.1
2,295,007 - Xcc-8004.2348.1 0.61 +0.2
2,295,007 - Xcc-8004.2348.1 0.61 +1.1
2,295,034 - Xcc-8004.2348.1 0.63 -0.5
2,295,084 + Xcc-8004.2348.1 0.67 -1.0
2,295,084 + Xcc-8004.2348.1 0.67 +0.1
2,295,084 + Xcc-8004.2348.1 0.67 -0.9
2,295,084 + Xcc-8004.2348.1 0.67 +1.1
2,295,085 - Xcc-8004.2348.1 0.67 +0.2
2,295,085 - Xcc-8004.2348.1 0.67 -0.8
2,295,085 - Xcc-8004.2348.1 0.67 -1.5
2,295,085 - Xcc-8004.2348.1 0.67 -0.1
2,295,085 - Xcc-8004.2348.1 0.67 -0.1
2,295,085 - Xcc-8004.2348.1 0.67 -0.8
2,295,085 - Xcc-8004.2348.1 0.67 +0.8

Or see this region's nucleotide sequence