Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2300.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,250,516	+		Xcc-8004.2299.1	0.31	+1.2
2,250,516	+		Xcc-8004.2299.1	0.31	+0.6
2,250,517	-		Xcc-8004.2299.1	0.31	-0.0
2,250,554	+		Xcc-8004.2299.1	0.33	-0.5
2,250,555	-		Xcc-8004.2299.1	0.33	-1.2
2,250,635	+		Xcc-8004.2299.1	0.39	-0.4
2,250,635	+		Xcc-8004.2299.1	0.39	-2.5
2,250,636	-		Xcc-8004.2299.1	0.39	-0.3
2,250,636	-		Xcc-8004.2299.1	0.39	+0.7
2,250,636	-		Xcc-8004.2299.1	0.39	-0.1
2,250,810	+		Xcc-8004.2299.1	0.51	+0.8
2,250,811	-		Xcc-8004.2299.1	0.51	-0.9
2,250,846	-		Xcc-8004.2299.1	0.54	+0.1
2,250,945	-		Xcc-8004.2299.1	0.61	-0.0
2,250,945	-		Xcc-8004.2299.1	0.61	+0.2
2,251,708	-		Xcc-8004.2300.1	0.16	+0.0
2,251,738	+		Xcc-8004.2300.1	0.18	-0.1
2,251,738	+		Xcc-8004.2300.1	0.18	+1.6
2,251,738	+		Xcc-8004.2300.1	0.18	-0.6
2,251,738	+		Xcc-8004.2300.1	0.18	+0.1
2,251,738	+		Xcc-8004.2300.1	0.18	-0.4
2,251,738	+		Xcc-8004.2300.1	0.18	-0.5
2,251,738	+		Xcc-8004.2300.1	0.18	-0.1
2,251,738	+		Xcc-8004.2300.1	0.18	-1.1
2,251,738	+		Xcc-8004.2300.1	0.18	-0.8
2,251,739	-		Xcc-8004.2300.1	0.18	-0.8
2,251,739	-		Xcc-8004.2300.1	0.18	-1.4
2,251,739	-		Xcc-8004.2300.1	0.18	+0.7
2,251,739	-		Xcc-8004.2300.1	0.18	+0.5
2,251,739	-		Xcc-8004.2300.1	0.18	-2.0
2,251,739	-		Xcc-8004.2300.1	0.18	+0.4
2,251,948	+		Xcc-8004.2300.1	0.34	+1.3
2,251,948	+		Xcc-8004.2300.1	0.34	+0.6
2,252,144	+		Xcc-8004.2300.1	0.48	+1.1
2,252,144	+		Xcc-8004.2300.1	0.48	+2.4
2,252,161	+		Xcc-8004.2300.1	0.49	-0.2
2,252,161	+		Xcc-8004.2300.1	0.49	-1.2
2,252,161	+		Xcc-8004.2300.1	0.49	+1.4
2,252,161	+		Xcc-8004.2300.1	0.49	+0.9
2,252,161	+		Xcc-8004.2300.1	0.49	+0.8
2,252,162	-		Xcc-8004.2300.1	0.49	+0.5
2,252,162	-		Xcc-8004.2300.1	0.49	+0.9
2,252,458	+		Xcc-8004.2300.1	0.71	-0.5
2,252,458	+		Xcc-8004.2300.1	0.71	-0.5
2,252,458	+		Xcc-8004.2300.1	0.71	-1.4
2,252,458	+		Xcc-8004.2300.1	0.71	-0.1
2,252,458	+		Xcc-8004.2300.1	0.71	-0.8
2,252,459	-		Xcc-8004.2300.1	0.71	-0.4
2,252,459	-		Xcc-8004.2300.1	0.71	+0.3
2,252,512	+		Xcc-8004.2300.1	0.75	-0.8
2,252,512	+		Xcc-8004.2300.1	0.75	+0.9
2,252,512	+		Xcc-8004.2300.1	0.75	+1.0
2,252,512	+		Xcc-8004.2300.1	0.75	+0.3
2,252,512	+		Xcc-8004.2300.1	0.75	-1.5
2,252,513	-		Xcc-8004.2300.1	0.75	+0.3
2,252,513	-		Xcc-8004.2300.1	0.75	+0.9
2,252,513	-		Xcc-8004.2300.1	0.75	+0.2
2,252,513	-		Xcc-8004.2300.1	0.75	-0.1
2,252,593	+		Xcc-8004.2300.1	0.81	-0.2
2,252,593	+		Xcc-8004.2300.1	0.81	+0.2
2,252,594	-		Xcc-8004.2300.1	0.81	-0.8
2,252,594	-		Xcc-8004.2300.1	0.81	+0.5
2,252,594	-		Xcc-8004.2300.1	0.81	+0.1
2,252,594	-		Xcc-8004.2300.1	0.81	+0.2
2,252,594	-		Xcc-8004.2300.1	0.81	-0.1
2,252,594	-		Xcc-8004.2300.1	0.81	-1.0
2,252,617	+		Xcc-8004.2300.1	0.83	-0.1
2,252,617	+		Xcc-8004.2300.1	0.83	-0.8
2,252,618	-		Xcc-8004.2300.1	0.83	+0.5
2,252,686	+		Xcc-8004.2300.1	0.88	-0.1
2,252,686	+		Xcc-8004.2300.1	0.88	+0.1
2,252,686	+		Xcc-8004.2300.1	0.88	-0.1
2,252,686	+		Xcc-8004.2300.1	0.88	-2.6
2,252,686	+		Xcc-8004.2300.1	0.88	+1.8
2,252,686	+		Xcc-8004.2300.1	0.88	-0.5
2,252,686	+		Xcc-8004.2300.1	0.88	-0.4
2,252,686	+		Xcc-8004.2300.1	0.88	+1.3
2,252,686	+		Xcc-8004.2300.1	0.88	+0.7
2,252,686	+		Xcc-8004.2300.1	0.88	+2.4
2,252,686	+		Xcc-8004.2300.1	0.88	-1.1
2,252,686	+		Xcc-8004.2300.1	0.88	+0.6
2,252,687	-		Xcc-8004.2300.1	0.88	+0.2
2,252,687	-		Xcc-8004.2300.1	0.88	-0.6
2,252,687	-		Xcc-8004.2300.1	0.88	-0.8
2,252,687	-		Xcc-8004.2300.1	0.88	+0.2
2,252,687	-		Xcc-8004.2300.1	0.88	+0.9
2,252,687	-		Xcc-8004.2300.1	0.88	+0.1
2,252,687	-		Xcc-8004.2300.1	0.88	-1.9
2,252,687	-		Xcc-8004.2300.1	0.88	-0.3
2,252,687	-		Xcc-8004.2300.1	0.88	+0.3
2,252,687	-		Xcc-8004.2300.1	0.88	-0.5
2,252,687	-		Xcc-8004.2300.1	0.88	-0.5
2,252,749	+				+1.8
2,252,749	+				-1.2
2,252,749	+				-0.9
2,252,749	+				-0.1
2,252,750	-				-0.1
2,252,764	+				-0.1
2,252,764	+				+1.2
2,252,765	-				+0.1
2,252,975	+				-0.3
2,252,975	+				-0.2
2,252,976	-				+1.6
2,252,977	+				-0.2
2,252,977	+				-0.5
2,252,977	+				+0.6
2,252,977	+				-0.1
2,252,977	+				-0.0
2,252,977	+				-0.9
2,252,977	+				-0.5
2,252,978	-				+0.4
2,252,978	-				+0.5
2,252,978	-				+1.4
2,252,978	-				-0.1
2,253,014	+				+0.6
2,253,014	+				-1.2
2,253,014	+				+0.6
2,253,014	+				+0.1
2,253,015	-				+0.5
2,253,015	-				+1.7
2,253,049	-				+0.2
2,253,049	-				-1.5
2,253,051	+				+0.6
2,253,052	-				+0.0
2,253,052	-				+0.1
2,253,052	-				-1.2
2,253,175	-				-0.7
2,253,175	-				+1.0
2,253,198	+				+1.0
2,253,199	-				+0.2
2,253,208	+				-0.6
2,253,209	-				+0.8
2,253,209	-				-0.9
2,253,331	+				-0.3
2,253,332	-				-0.5
2,253,332	-				+0.8
2,253,341	+				-1.8
2,253,341	+				+0.6
2,253,341	+				+1.0
2,253,341	+				-1.2
2,253,341	+				+0.1
2,253,341	+				-1.5
2,253,341	+				+0.4
2,253,341	+				+1.3
2,253,341	+				-0.5
2,253,342	-				+1.0
2,253,342	-				+0.1
2,253,342	-				+1.1
2,253,342	-				-0.8
2,253,342	-				-0.2
2,253,342	-				-0.0
2,253,345	+				-1.9
2,253,345	+				+2.0
2,253,345	+				-0.4
2,253,346	-				+0.0
2,253,346	-				-1.0
2,253,540	+				+0.0
2,253,540	+				-0.9
2,253,541	-				-0.5
2,253,618	+				-0.5
2,253,618	+				+1.2
2,253,625	-				-0.0
2,253,632	+				+1.0
2,253,632	+				+0.5
2,253,633	-				+1.5
2,253,633	-				+0.1
2,253,639	+				-0.1
2,253,640	-				-0.3
2,253,715	+				-2.8
2,253,715	+				-0.1
2,253,715	+				-2.4
2,253,715	+				-0.5
2,253,715	+				+0.4
2,253,715	+				+0.5
2,253,716	-				-1.8
2,253,716	-				-0.8
2,253,716	-				-1.1
2,253,716	-				-1.3
2,253,716	-				+0.3
2,253,716	-				+0.7
2,253,716	-				+0.3
2,253,750	-				+1.5
2,253,750	-				-2.8