Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2237.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2235.1 and Xcc-8004.2237.1 overlap by 61 nucleotidesXcc-8004.2237.1 and Xcc-8004.2238.1 are separated by 234 nucleotides Xcc-8004.2235.1: Xcc-8004.2235.1 - Lhr-like helicases, at 2,184,282 to 2,188,676 Xcc-8004.2235.1 Xcc-8004.2237.1: Xcc-8004.2237.1 - DNA-3-methyladenine glycosylase II (EC 3.2.2.21), at 2,188,616 to 2,189,239 Xcc-8004.2237.1 Xcc-8004.2238.1: Xcc-8004.2238.1 - chemotaxis protein, at 2,189,474 to 2,191,195 Xcc-8004.2238.1 Position (kb) 2188 2189 2190Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2187.636 kb on + strand, within Xcc-8004.2235.1at 2187.964 kb on - strand, within Xcc-8004.2235.1at 2187.964 kb on - strand, within Xcc-8004.2235.1at 2187.964 kb on - strand, within Xcc-8004.2235.1at 2187.964 kb on - strand, within Xcc-8004.2235.1at 2187.964 kb on - strand, within Xcc-8004.2235.1at 2187.964 kb on - strand, within Xcc-8004.2235.1at 2187.964 kb on - strand, within Xcc-8004.2235.1at 2187.986 kb on - strand, within Xcc-8004.2235.1at 2187.986 kb on - strand, within Xcc-8004.2235.1at 2187.986 kb on - strand, within Xcc-8004.2235.1at 2188.231 kb on + strand, within Xcc-8004.2235.1at 2188.231 kb on + strand, within Xcc-8004.2235.1at 2188.232 kb on - strand, within Xcc-8004.2235.1at 2188.242 kb on + strandat 2188.242 kb on + strandat 2188.242 kb on + strandat 2188.243 kb on - strandat 2188.243 kb on - strandat 2188.243 kb on - strandat 2188.243 kb on - strandat 2188.243 kb on - strandat 2188.287 kb on - strandat 2188.979 kb on + strand, within Xcc-8004.2237.1at 2188.979 kb on + strand, within Xcc-8004.2237.1at 2188.979 kb on + strand, within Xcc-8004.2237.1at 2188.979 kb on + strand, within Xcc-8004.2237.1at 2188.980 kb on - strand, within Xcc-8004.2237.1at 2188.980 kb on - strand, within Xcc-8004.2237.1at 2189.007 kb on + strand, within Xcc-8004.2237.1at 2189.007 kb on + strand, within Xcc-8004.2237.1at 2189.008 kb on - strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.016 kb on + strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.017 kb on - strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.022 kb on + strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.023 kb on - strand, within Xcc-8004.2237.1at 2189.109 kb on + strand, within Xcc-8004.2237.1at 2189.109 kb on + strand, within Xcc-8004.2237.1at 2189.109 kb on + strand, within Xcc-8004.2237.1at 2189.109 kb on + strand, within Xcc-8004.2237.1at 2189.171 kb on + strand, within Xcc-8004.2237.1at 2189.172 kb on - strand, within Xcc-8004.2237.1at 2189.172 kb on - strand, within Xcc-8004.2237.1at 2189.172 kb on - strand, within Xcc-8004.2237.1at 2189.205 kb on + strandat 2189.206 kb on - strandat 2189.206 kb on - strandat 2189.301 kb on - strandat 2189.364 kb on + strandat 2189.365 kb on - strandat 2189.436 kb on - strandat 2189.448 kb on - strandat 2189.541 kb on + strandat 2189.541 kb on + strandat 2189.541 kb on + strandat 2189.542 kb on - strandat 2189.542 kb on - strandat 2189.542 kb on - strandat 2189.624 kb on + strandat 2189.666 kb on + strand, within Xcc-8004.2238.1at 2189.666 kb on + strand, within Xcc-8004.2238.1at 2189.666 kb on + strand, within Xcc-8004.2238.1at 2189.666 kb on + strand, within Xcc-8004.2238.1at 2189.666 kb on + strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.667 kb on - strand, within Xcc-8004.2238.1at 2189.723 kb on + strand, within Xcc-8004.2238.1at 2189.724 kb on - strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.804 kb on + strand, within Xcc-8004.2238.1at 2189.805 kb on - strand, within Xcc-8004.2238.1at 2189.805 kb on - strand, within Xcc-8004.2238.1at 2189.805 kb on - strand, within Xcc-8004.2238.1at 2189.805 kb on - strand, within Xcc-8004.2238.1at 2189.825 kb on + strand, within Xcc-8004.2238.1at 2189.825 kb on + strand, within Xcc-8004.2238.1at 2189.825 kb on + strand, within Xcc-8004.2238.1at 2189.825 kb on + strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.826 kb on - strand, within Xcc-8004.2238.1at 2189.906 kb on + strand, within Xcc-8004.2238.1at 2189.906 kb on + strand, within Xcc-8004.2238.1at 2189.906 kb on + strand, within Xcc-8004.2238.1at 2189.906 kb on + strand, within Xcc-8004.2238.1at 2189.907 kb on - strand, within Xcc-8004.2238.1at 2189.907 kb on - strand, within Xcc-8004.2238.1at 2190.127 kb on + strand, within Xcc-8004.2238.1at 2190.127 kb on + strand, within Xcc-8004.2238.1at 2190.127 kb on + strand, within Xcc-8004.2238.1at 2190.127 kb on + strand, within Xcc-8004.2238.1at 2190.127 kb on + strand, within Xcc-8004.2238.1at 2190.128 kb on - strand, within Xcc-8004.2238.1at 2190.128 kb on - strand, within Xcc-8004.2238.1at 2190.128 kb on - strand, within Xcc-8004.2238.1at 2190.128 kb on - strand, within Xcc-8004.2238.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,187,636 + Xcc-8004.2235.1 0.76 -1.4
2,187,964 - Xcc-8004.2235.1 0.84 +0.8
2,187,964 - Xcc-8004.2235.1 0.84 -0.9
2,187,964 - Xcc-8004.2235.1 0.84 +0.6
2,187,964 - Xcc-8004.2235.1 0.84 -0.1
2,187,964 - Xcc-8004.2235.1 0.84 +1.3
2,187,964 - Xcc-8004.2235.1 0.84 -1.0
2,187,964 - Xcc-8004.2235.1 0.84 +1.2
2,187,986 - Xcc-8004.2235.1 0.84 -0.4
2,187,986 - Xcc-8004.2235.1 0.84 +1.1
2,187,986 - Xcc-8004.2235.1 0.84 -1.1
2,188,231 + Xcc-8004.2235.1 0.90 +0.9
2,188,231 + Xcc-8004.2235.1 0.90 -0.1
2,188,232 - Xcc-8004.2235.1 0.90 +1.5
2,188,242 + -0.6
2,188,242 + -0.4
2,188,242 + +0.5
2,188,243 - -1.8
2,188,243 - +0.1
2,188,243 - +0.4
2,188,243 - -0.9
2,188,243 - -1.8
2,188,287 - -1.8
2,188,979 + Xcc-8004.2237.1 0.58 +0.9
2,188,979 + Xcc-8004.2237.1 0.58 +1.1
2,188,979 + Xcc-8004.2237.1 0.58 -0.5
2,188,979 + Xcc-8004.2237.1 0.58 +0.2
2,188,980 - Xcc-8004.2237.1 0.58 +0.3
2,188,980 - Xcc-8004.2237.1 0.58 +0.0
2,189,007 + Xcc-8004.2237.1 0.63 -1.7
2,189,007 + Xcc-8004.2237.1 0.63 -0.5
2,189,008 - Xcc-8004.2237.1 0.63 +0.4
2,189,016 + Xcc-8004.2237.1 0.64 -0.4
2,189,016 + Xcc-8004.2237.1 0.64 -0.2
2,189,016 + Xcc-8004.2237.1 0.64 +0.2
2,189,016 + Xcc-8004.2237.1 0.64 +0.3
2,189,016 + Xcc-8004.2237.1 0.64 +0.5
2,189,016 + Xcc-8004.2237.1 0.64 -0.3
2,189,016 + Xcc-8004.2237.1 0.64 +3.1
2,189,016 + Xcc-8004.2237.1 0.64 +0.2
2,189,017 - Xcc-8004.2237.1 0.64 -1.1
2,189,017 - Xcc-8004.2237.1 0.64 -0.9
2,189,017 - Xcc-8004.2237.1 0.64 -1.3
2,189,017 - Xcc-8004.2237.1 0.64 -0.2
2,189,017 - Xcc-8004.2237.1 0.64 -0.7
2,189,017 - Xcc-8004.2237.1 0.64 +0.9
2,189,017 - Xcc-8004.2237.1 0.64 -0.3
2,189,017 - Xcc-8004.2237.1 0.64 +0.9
2,189,017 - Xcc-8004.2237.1 0.64 +0.8
2,189,017 - Xcc-8004.2237.1 0.64 -1.4
2,189,017 - Xcc-8004.2237.1 0.64 +0.4
2,189,022 + Xcc-8004.2237.1 0.65 -0.4
2,189,022 + Xcc-8004.2237.1 0.65 -0.1
2,189,022 + Xcc-8004.2237.1 0.65 -0.3
2,189,022 + Xcc-8004.2237.1 0.65 +0.8
2,189,022 + Xcc-8004.2237.1 0.65 -1.1
2,189,022 + Xcc-8004.2237.1 0.65 -0.4
2,189,022 + Xcc-8004.2237.1 0.65 +0.1
2,189,022 + Xcc-8004.2237.1 0.65 +0.7
2,189,022 + Xcc-8004.2237.1 0.65 +2.5
2,189,022 + Xcc-8004.2237.1 0.65 -1.7
2,189,022 + Xcc-8004.2237.1 0.65 -0.4
2,189,022 + Xcc-8004.2237.1 0.65 +0.1
2,189,022 + Xcc-8004.2237.1 0.65 +0.5
2,189,022 + Xcc-8004.2237.1 0.65 +0.3
2,189,022 + Xcc-8004.2237.1 0.65 +0.6
2,189,023 - Xcc-8004.2237.1 0.65 -1.2
2,189,023 - Xcc-8004.2237.1 0.65 +0.8
2,189,023 - Xcc-8004.2237.1 0.65 +0.1
2,189,023 - Xcc-8004.2237.1 0.65 -1.8
2,189,023 - Xcc-8004.2237.1 0.65 +2.0
2,189,023 - Xcc-8004.2237.1 0.65 -0.6
2,189,023 - Xcc-8004.2237.1 0.65 +0.6
2,189,023 - Xcc-8004.2237.1 0.65 +0.4
2,189,023 - Xcc-8004.2237.1 0.65 -0.4
2,189,023 - Xcc-8004.2237.1 0.65 -0.1
2,189,023 - Xcc-8004.2237.1 0.65 -0.1
2,189,023 - Xcc-8004.2237.1 0.65 +0.4
2,189,023 - Xcc-8004.2237.1 0.65 +0.3
2,189,023 - Xcc-8004.2237.1 0.65 +1.1
2,189,023 - Xcc-8004.2237.1 0.65 +0.5
2,189,109 + Xcc-8004.2237.1 0.79 +1.6
2,189,109 + Xcc-8004.2237.1 0.79 -1.0
2,189,109 + Xcc-8004.2237.1 0.79 -0.9
2,189,109 + Xcc-8004.2237.1 0.79 -0.0
2,189,171 + Xcc-8004.2237.1 0.89 -1.0
2,189,172 - Xcc-8004.2237.1 0.89 +0.3
2,189,172 - Xcc-8004.2237.1 0.89 -1.8
2,189,172 - Xcc-8004.2237.1 0.89 -1.6
2,189,205 + -0.0
2,189,206 - -0.9
2,189,206 - +1.5
2,189,301 - -0.6
2,189,364 + -0.6
2,189,365 - -1.0
2,189,436 - -0.2
2,189,448 - -0.7
2,189,541 + +0.7
2,189,541 + -2.1
2,189,541 + +0.3
2,189,542 - +1.6
2,189,542 - -0.1
2,189,542 - -0.1
2,189,624 + +0.7
2,189,666 + Xcc-8004.2238.1 0.11 -0.7
2,189,666 + Xcc-8004.2238.1 0.11 +0.6
2,189,666 + Xcc-8004.2238.1 0.11 -0.7
2,189,666 + Xcc-8004.2238.1 0.11 -1.4
2,189,666 + Xcc-8004.2238.1 0.11 +0.8
2,189,667 - Xcc-8004.2238.1 0.11 +0.3
2,189,667 - Xcc-8004.2238.1 0.11 +1.2
2,189,667 - Xcc-8004.2238.1 0.11 -0.3
2,189,667 - Xcc-8004.2238.1 0.11 -0.3
2,189,667 - Xcc-8004.2238.1 0.11 -0.5
2,189,667 - Xcc-8004.2238.1 0.11 -1.5
2,189,723 + Xcc-8004.2238.1 0.14 +2.5
2,189,724 - Xcc-8004.2238.1 0.15 +1.8
2,189,804 + Xcc-8004.2238.1 0.19 -0.5
2,189,804 + Xcc-8004.2238.1 0.19 -0.3
2,189,804 + Xcc-8004.2238.1 0.19 +1.5
2,189,804 + Xcc-8004.2238.1 0.19 +0.8
2,189,804 + Xcc-8004.2238.1 0.19 -0.8
2,189,804 + Xcc-8004.2238.1 0.19 +1.0
2,189,805 - Xcc-8004.2238.1 0.19 +1.8
2,189,805 - Xcc-8004.2238.1 0.19 +1.5
2,189,805 - Xcc-8004.2238.1 0.19 -0.7
2,189,805 - Xcc-8004.2238.1 0.19 -0.3
2,189,825 + Xcc-8004.2238.1 0.20 +0.4
2,189,825 + Xcc-8004.2238.1 0.20 +0.4
2,189,825 + Xcc-8004.2238.1 0.20 -1.8
2,189,825 + Xcc-8004.2238.1 0.20 +0.9
2,189,826 - Xcc-8004.2238.1 0.20 +0.5
2,189,826 - Xcc-8004.2238.1 0.20 -0.3
2,189,826 - Xcc-8004.2238.1 0.20 +0.3
2,189,826 - Xcc-8004.2238.1 0.20 -0.8
2,189,826 - Xcc-8004.2238.1 0.20 +1.3
2,189,826 - Xcc-8004.2238.1 0.20 -0.7
2,189,906 + Xcc-8004.2238.1 0.25 -0.6
2,189,906 + Xcc-8004.2238.1 0.25 +0.3
2,189,906 + Xcc-8004.2238.1 0.25 -0.7
2,189,906 + Xcc-8004.2238.1 0.25 +1.2
2,189,907 - Xcc-8004.2238.1 0.25 +2.3
2,189,907 - Xcc-8004.2238.1 0.25 +0.7
2,190,127 + Xcc-8004.2238.1 0.38 -1.0
2,190,127 + Xcc-8004.2238.1 0.38 +0.8
2,190,127 + Xcc-8004.2238.1 0.38 +0.3
2,190,127 + Xcc-8004.2238.1 0.38 -0.1
2,190,127 + Xcc-8004.2238.1 0.38 -1.6
2,190,128 - Xcc-8004.2238.1 0.38 -1.0
2,190,128 - Xcc-8004.2238.1 0.38 -0.7
2,190,128 - Xcc-8004.2238.1 0.38 -1.2
2,190,128 - Xcc-8004.2238.1 0.38 +0.2

Or see this region's nucleotide sequence