Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2234.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,182,554	+				+0.9
2,182,554	+				-0.8
2,182,554	+				-1.2
2,182,554	+				-0.6
2,182,555	-				-2.3
2,182,555	-				-1.8
2,182,555	-				+0.3
2,182,555	-				-0.8
2,182,660	+				-1.9
2,182,661	-				+0.4
2,182,661	-				+0.8
2,182,676	+				+0.4
2,182,677	-				-1.0
2,182,677	-				+0.8
2,182,713	+		Xcc-8004.2232.1	0.17	-0.1
2,182,713	+		Xcc-8004.2232.1	0.17	+0.1
2,182,867	+		Xcc-8004.2232.1	0.53	-1.9
2,182,867	+		Xcc-8004.2232.1	0.53	+2.4
2,182,906	+		Xcc-8004.2232.1	0.62	-1.3
2,182,906	+		Xcc-8004.2232.1	0.62	-1.6
2,182,906	+		Xcc-8004.2232.1	0.62	-0.1
2,182,906	+		Xcc-8004.2232.1	0.62	+1.1
2,182,906	+		Xcc-8004.2232.1	0.62	-1.0
2,182,906	+		Xcc-8004.2232.1	0.62	-0.2
2,182,906	+		Xcc-8004.2232.1	0.62	+0.4
2,182,906	+		Xcc-8004.2232.1	0.62	+0.5
2,182,907	-		Xcc-8004.2232.1	0.63	-0.3
2,182,907	-		Xcc-8004.2232.1	0.63	-1.9
2,182,907	-		Xcc-8004.2232.1	0.63	-0.4
2,182,907	-		Xcc-8004.2232.1	0.63	-0.4
2,182,907	-		Xcc-8004.2232.1	0.63	-0.5
2,182,907	-		Xcc-8004.2232.1	0.63	-0.1
2,182,907	-		Xcc-8004.2232.1	0.63	-1.7
2,182,907	-		Xcc-8004.2232.1	0.63	+0.2
2,182,907	-		Xcc-8004.2232.1	0.63	+0.1
2,182,907	-		Xcc-8004.2232.1	0.63	-0.9
2,182,984	-		Xcc-8004.2232.1	0.81	-0.1
2,183,062	+				-0.2
2,183,062	+				-0.6
2,183,062	+				-1.3
2,183,062	+				+0.0
2,183,063	-				-0.5
2,183,063	-				-0.5
2,183,063	-				+0.3
2,183,063	-				-0.4
2,183,153	+		Xcc-8004.2233.1	0.21	-0.3
2,183,154	-		Xcc-8004.2233.1	0.22	-1.0
2,183,159	+		Xcc-8004.2233.1	0.23	+0.3
2,183,159	+		Xcc-8004.2233.1	0.23	-0.4
2,183,159	+		Xcc-8004.2233.1	0.23	-0.9
2,183,159	+		Xcc-8004.2233.1	0.23	-0.5
2,183,159	+		Xcc-8004.2233.1	0.23	+0.0
2,183,159	+		Xcc-8004.2233.1	0.23	+0.5
2,183,165	+		Xcc-8004.2233.1	0.25	+0.7
2,183,166	-		Xcc-8004.2233.1	0.25	-0.0
2,183,171	+		Xcc-8004.2233.1	0.26	-1.5
2,183,180	+		Xcc-8004.2233.1	0.29	+0.9
2,183,180	+		Xcc-8004.2233.1	0.29	+1.4
2,183,180	+		Xcc-8004.2233.1	0.29	+0.1
2,183,180	+		Xcc-8004.2233.1	0.29	-0.8
2,183,180	+		Xcc-8004.2233.1	0.29	+1.9
2,183,180	+		Xcc-8004.2233.1	0.29	-0.9
2,183,181	-		Xcc-8004.2233.1	0.29	-0.9
2,183,181	-		Xcc-8004.2233.1	0.29	+0.8
2,183,181	-		Xcc-8004.2233.1	0.29	+1.0
2,183,181	-		Xcc-8004.2233.1	0.29	+0.6
2,183,218	+		Xcc-8004.2233.1	0.40	+0.9
2,183,218	+		Xcc-8004.2233.1	0.40	-0.3
2,183,219	-		Xcc-8004.2233.1	0.40	+0.6
2,183,219	-		Xcc-8004.2233.1	0.40	-0.8
2,183,219	-		Xcc-8004.2233.1	0.40	+0.4
2,183,219	-		Xcc-8004.2233.1	0.40	+0.3
2,183,219	-		Xcc-8004.2233.1	0.40	+2.3
2,183,219	-		Xcc-8004.2233.1	0.40	+1.5
2,183,219	-		Xcc-8004.2233.1	0.40	-1.5
2,183,222	+		Xcc-8004.2233.1	0.41	+0.4
2,183,222	+		Xcc-8004.2233.1	0.41	+0.9
2,183,223	-		Xcc-8004.2233.1	0.41	-0.4
2,183,223	-		Xcc-8004.2233.1	0.41	+2.2
2,183,223	-		Xcc-8004.2233.1	0.41	+0.8
2,183,223	-		Xcc-8004.2233.1	0.41	+0.2
2,183,333	+		Xcc-8004.2233.1	0.73	+1.2
2,183,333	+		Xcc-8004.2233.1	0.73	+0.1
2,183,390	+		Xcc-8004.2233.1	0.89	+0.3
2,183,390	+		Xcc-8004.2233.1	0.89	-0.7
2,183,491	+				-0.5
2,183,491	+				+1.2
2,183,508	+				-0.2
2,183,508	+				+0.2
2,183,508	+				-2.1
2,183,509	-				+0.8
2,183,509	-				+0.7
2,183,509	-				+0.3
2,183,509	-				-0.8
2,183,512	+				-0.4
2,183,587	+		Xcc-8004.2234.1	0.12	+1.3
2,183,588	-		Xcc-8004.2234.1	0.12	-1.2
2,183,588	-		Xcc-8004.2234.1	0.12	+0.2
2,183,588	-		Xcc-8004.2234.1	0.12	-1.9
2,183,843	+		Xcc-8004.2234.1	0.79	+0.4
2,183,843	+		Xcc-8004.2234.1	0.79	+1.1
2,183,843	+		Xcc-8004.2234.1	0.79	+0.0
2,183,844	-		Xcc-8004.2234.1	0.79	-1.8
2,183,844	-		Xcc-8004.2234.1	0.79	+0.7
2,183,844	-		Xcc-8004.2234.1	0.79	+0.8
2,183,844	-		Xcc-8004.2234.1	0.79	-1.2
2,184,090	-				-0.3
2,184,111	+				-0.0
2,184,111	+				+0.5
2,184,111	+				+0.0
2,184,112	-				-2.4
2,184,112	-				+0.4
2,184,112	-				+0.0
2,184,112	-				+0.5
2,184,157	-				+0.1
2,184,157	-				+0.9
2,184,216	+				-0.7
2,184,216	+				+0.2
2,184,216	+				+0.9
2,184,217	-				+1.2
2,184,217	-				+1.4
2,184,217	-				+0.3
2,184,335	+				+0.4
2,184,335	+				+0.1
2,184,335	+				+3.7
2,184,336	-				+2.1
2,184,336	-				-0.2
2,184,336	-				+0.9
2,184,336	-				-0.0
2,184,336	-				-0.8
2,184,398	+				+0.2
2,184,399	-				+0.9
2,184,522	+				+0.3
2,184,522	+				+1.0
2,184,522	+				+1.5
2,184,522	+				-0.6
2,184,522	+				+0.2
2,184,522	+				-0.5
2,184,522	+				-1.3
2,184,522	+				-0.5
2,184,522	+				+1.2
2,184,522	+				+0.8
2,184,522	+				+0.4
2,184,522	+				-0.4
2,184,523	-				+0.3
2,184,523	-				-0.2
2,184,523	-				-1.3
2,184,523	-				-0.0
2,184,523	-				-1.8
2,184,523	-				-0.3
2,184,557	-				-1.5
2,184,701	+				-1.1
2,184,701	+				-0.6
2,184,701	+				+0.7
2,184,701	+				-1.5
2,184,701	+				+0.2
2,184,701	+				+0.3
2,184,701	+				+0.9
2,184,702	-				+0.2
2,184,729	+		Xcc-8004.2235.1	0.10	-0.3
2,184,729	+		Xcc-8004.2235.1	0.10	+0.6
2,184,729	+		Xcc-8004.2235.1	0.10	-0.5
2,184,729	+		Xcc-8004.2235.1	0.10	+3.4
2,184,729	+		Xcc-8004.2235.1	0.10	+0.3
2,184,729	+		Xcc-8004.2235.1	0.10	-1.3
2,184,729	+		Xcc-8004.2235.1	0.10	-0.1
2,184,729	+		Xcc-8004.2235.1	0.10	+0.6
2,184,729	+		Xcc-8004.2235.1	0.10	+0.7
2,184,729	+		Xcc-8004.2235.1	0.10	+0.6
2,184,729	+		Xcc-8004.2235.1	0.10	-0.3
2,184,729	+		Xcc-8004.2235.1	0.10	-0.1
2,184,729	+		Xcc-8004.2235.1	0.10	-0.4
2,184,730	-		Xcc-8004.2235.1	0.10	+1.2
2,184,775	+		Xcc-8004.2235.1	0.11	+1.0
2,184,775	+		Xcc-8004.2235.1	0.11	+0.5
2,184,775	+		Xcc-8004.2235.1	0.11	+0.2
2,184,775	+		Xcc-8004.2235.1	0.11	-1.2
2,184,775	+		Xcc-8004.2235.1	0.11	-0.6
2,184,775	+		Xcc-8004.2235.1	0.11	+0.3
2,184,775	+		Xcc-8004.2235.1	0.11	+1.6
2,184,775	+		Xcc-8004.2235.1	0.11	+0.8
2,184,775	+		Xcc-8004.2235.1	0.11	+0.4
2,184,775	+		Xcc-8004.2235.1	0.11	+1.2
2,184,775	+		Xcc-8004.2235.1	0.11	-0.4
2,184,775	+		Xcc-8004.2235.1	0.11	-1.0
2,184,775	+		Xcc-8004.2235.1	0.11	+1.0
2,184,775	+		Xcc-8004.2235.1	0.11	-1.0
2,184,775	+		Xcc-8004.2235.1	0.11	-0.0
2,184,775	+		Xcc-8004.2235.1	0.11	-0.3
2,184,775	+		Xcc-8004.2235.1	0.11	-0.2
2,184,775	+		Xcc-8004.2235.1	0.11	+0.2
2,184,776	-		Xcc-8004.2235.1	0.11	-0.6
2,184,776	-		Xcc-8004.2235.1	0.11	+1.4
2,184,776	-		Xcc-8004.2235.1	0.11	+1.8
2,184,776	-		Xcc-8004.2235.1	0.11	-0.5
2,184,776	-		Xcc-8004.2235.1	0.11	+0.4
2,184,776	-		Xcc-8004.2235.1	0.11	+0.4
2,184,776	-		Xcc-8004.2235.1	0.11	-1.1
2,184,776	-		Xcc-8004.2235.1	0.11	+1.5
2,184,776	-		Xcc-8004.2235.1	0.11	+0.3
2,184,776	-		Xcc-8004.2235.1	0.11	-1.4
2,184,776	-		Xcc-8004.2235.1	0.11	-0.0
2,184,776	-		Xcc-8004.2235.1	0.11	-0.2
2,184,776	-		Xcc-8004.2235.1	0.11	-0.5