Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2229.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,178,736	+				+0.4
2,178,736	+				-0.4
2,178,736	+				+0.0
2,178,736	+				+0.5
2,178,736	+				+0.0
2,178,736	+				+0.1
2,178,736	+				+0.1
2,178,737	-				-0.2
2,178,737	-				-0.5
2,178,737	-				+0.1
2,178,737	-				-0.3
2,178,737	-				-0.8
2,178,916	+				+0.3
2,178,917	-				-2.1
2,178,971	+				+0.3
2,178,971	+				+0.5
2,178,971	+				+1.1
2,178,971	+				+0.7
2,178,971	+				-0.6
2,178,971	+				-0.7
2,178,971	+				+0.4
2,178,971	+				-0.1
2,178,971	+				-0.9
2,178,971	+				-0.4
2,178,971	+				+0.8
2,178,971	+				+0.2
2,178,971	+				-0.7
2,178,971	+				-0.9
2,178,972	-				-0.7
2,178,972	-				+0.6
2,178,972	-				-1.8
2,178,972	-				-0.2
2,178,972	-				-0.5
2,178,972	-				+0.7
2,178,972	-				-1.3
2,178,972	-				+0.9
2,178,992	+				-0.9
2,178,992	+				-0.2
2,178,993	-				-0.3
2,179,062	+				+1.0
2,179,062	+				+0.5
2,179,062	+				-1.4
2,179,063	-				-0.1
2,179,066	+				+0.2
2,179,066	+				-0.7
2,179,066	+				+0.6
2,179,066	+				-0.2
2,179,066	+				-0.7
2,179,066	+				+0.4
2,179,066	+				+0.7
2,179,067	-				+0.6
2,179,067	-				-2.2
2,179,067	-				-0.2
2,179,067	-				-1.7
2,179,067	-				-0.9
2,179,067	-				+0.5
2,179,067	-				-1.8
2,179,067	-				+1.1
2,179,414	+		Xcc-8004.2228.1	0.51	-0.4
2,179,414	+		Xcc-8004.2228.1	0.51	-0.1
2,179,414	+		Xcc-8004.2228.1	0.51	-0.7
2,179,414	+		Xcc-8004.2228.1	0.51	-0.2
2,179,414	+		Xcc-8004.2228.1	0.51	+0.9
2,179,415	-		Xcc-8004.2228.1	0.51	+0.1
2,179,415	-		Xcc-8004.2228.1	0.51	-0.7
2,179,415	-		Xcc-8004.2228.1	0.51	+0.4
2,179,435	+		Xcc-8004.2228.1	0.54	-0.6
2,179,555	+		Xcc-8004.2228.1	0.73	-1.7
2,179,555	+		Xcc-8004.2228.1	0.73	-1.1
2,179,555	+		Xcc-8004.2228.1	0.73	-0.2
2,179,556	-		Xcc-8004.2228.1	0.73	+0.0
2,179,651	+		Xcc-8004.2228.1	0.87	+1.2
2,179,651	+		Xcc-8004.2228.1	0.87	-0.4
2,179,651	+		Xcc-8004.2228.1	0.87	+1.8
2,179,651	+		Xcc-8004.2228.1	0.87	-1.1
2,179,651	+		Xcc-8004.2228.1	0.87	-1.1
2,179,652	-		Xcc-8004.2228.1	0.88	-0.6
2,179,652	-		Xcc-8004.2228.1	0.88	-0.5
2,179,652	-		Xcc-8004.2228.1	0.88	-1.8
2,179,652	-		Xcc-8004.2228.1	0.88	+2.0
2,179,652	-		Xcc-8004.2228.1	0.88	-0.4
2,179,652	-		Xcc-8004.2228.1	0.88	-0.2
2,179,652	-		Xcc-8004.2228.1	0.88	-0.1
2,179,652	-		Xcc-8004.2228.1	0.88	-0.7
2,179,739	+				+0.6
2,179,739	+				+1.9
2,179,739	+				-1.7
2,179,739	+				+0.8
2,179,809	+				+0.2
2,179,810	-				+0.8
2,179,830	+				+0.2
2,179,830	+				+0.3
2,179,833	+				-0.1
2,179,834	-				-0.2
2,179,834	-				+3.1
2,179,861	-		Xcc-8004.2229.1	0.10	-0.4
2,179,861	-		Xcc-8004.2229.1	0.10	+0.2
2,179,863	+		Xcc-8004.2229.1	0.10	+0.6
2,179,863	+		Xcc-8004.2229.1	0.10	+0.2
2,179,864	-		Xcc-8004.2229.1	0.11	+0.5
2,179,932	+		Xcc-8004.2229.1	0.16	+1.5
2,179,932	+		Xcc-8004.2229.1	0.16	-1.0
2,179,932	+		Xcc-8004.2229.1	0.16	-1.1
2,179,932	+		Xcc-8004.2229.1	0.16	-1.0
2,179,932	+		Xcc-8004.2229.1	0.16	-0.4
2,179,933	-		Xcc-8004.2229.1	0.16	-0.1
2,179,933	-		Xcc-8004.2229.1	0.16	+0.4
2,179,933	-		Xcc-8004.2229.1	0.16	+0.4
2,179,933	-		Xcc-8004.2229.1	0.16	+0.1
2,179,933	-		Xcc-8004.2229.1	0.16	+1.1
2,179,933	-		Xcc-8004.2229.1	0.16	-0.5
2,179,971	+		Xcc-8004.2229.1	0.19	+1.0
2,179,971	+		Xcc-8004.2229.1	0.19	+1.2
2,179,972	-		Xcc-8004.2229.1	0.19	+0.3
2,179,972	-		Xcc-8004.2229.1	0.19	+0.8
2,179,972	-		Xcc-8004.2229.1	0.19	-0.4
2,180,010	+		Xcc-8004.2229.1	0.22	-0.6
2,180,011	-		Xcc-8004.2229.1	0.22	-0.4
2,180,011	-		Xcc-8004.2229.1	0.22	+2.1
2,180,052	+		Xcc-8004.2229.1	0.25	-0.6
2,180,052	+		Xcc-8004.2229.1	0.25	+0.8
2,180,053	-		Xcc-8004.2229.1	0.26	-0.9
2,180,053	-		Xcc-8004.2229.1	0.26	-0.3
2,180,079	+		Xcc-8004.2229.1	0.28	+1.2
2,180,079	+		Xcc-8004.2229.1	0.28	+1.1
2,180,079	+		Xcc-8004.2229.1	0.28	+1.1
2,180,080	-		Xcc-8004.2229.1	0.28	+0.5
2,180,088	+		Xcc-8004.2229.1	0.28	-0.9
2,180,133	+		Xcc-8004.2229.1	0.32	-0.5
2,180,133	+		Xcc-8004.2229.1	0.32	+0.1
2,180,133	+		Xcc-8004.2229.1	0.32	-0.7
2,180,133	+		Xcc-8004.2229.1	0.32	-0.8
2,180,134	-		Xcc-8004.2229.1	0.32	-0.7
2,180,134	-		Xcc-8004.2229.1	0.32	+2.5
2,180,166	+		Xcc-8004.2229.1	0.35	-0.7
2,180,166	+		Xcc-8004.2229.1	0.35	+0.0
2,180,167	-		Xcc-8004.2229.1	0.35	-0.9
2,180,167	-		Xcc-8004.2229.1	0.35	+0.8
2,180,278	-		Xcc-8004.2229.1	0.43	-1.3
2,180,485	-		Xcc-8004.2229.1	0.60	-0.5
2,180,485	-		Xcc-8004.2229.1	0.60	+1.1
2,180,487	+		Xcc-8004.2229.1	0.60	+4.1
2,180,487	+		Xcc-8004.2229.1	0.60	+0.9
2,180,488	-		Xcc-8004.2229.1	0.60	+0.2
2,180,488	-		Xcc-8004.2229.1	0.60	+0.9
2,180,643	+		Xcc-8004.2229.1	0.72	-0.5
2,180,644	-		Xcc-8004.2229.1	0.72	-0.9
2,180,644	-		Xcc-8004.2229.1	0.72	+0.3
2,180,644	-		Xcc-8004.2229.1	0.72	-1.9
2,180,644	-		Xcc-8004.2229.1	0.72	-0.6
2,180,646	+		Xcc-8004.2229.1	0.73	+0.3
2,180,646	+		Xcc-8004.2229.1	0.73	+0.8
2,180,647	-		Xcc-8004.2229.1	0.73	-1.5
2,180,647	-		Xcc-8004.2229.1	0.73	+1.1
2,180,647	-		Xcc-8004.2229.1	0.73	-1.3
2,180,647	-		Xcc-8004.2229.1	0.73	+2.1
2,180,655	+		Xcc-8004.2229.1	0.73	+1.7
2,180,877	+				-1.2
2,180,878	-				-0.7
2,180,904	+				+1.1
2,180,904	+				+1.5
2,180,988	+				+0.3
2,180,988	+				+0.8
2,180,988	+				+0.4
2,180,988	+				-0.5
2,180,989	-				+0.2
2,180,989	-				-0.5
2,180,989	-				+2.2
2,180,989	-				+0.8
2,180,989	-				-0.2
2,181,151	+		Xcc-8004.2230.1	0.22	-1.5
2,181,151	+		Xcc-8004.2230.1	0.22	+2.1
2,181,152	-		Xcc-8004.2230.1	0.22	+1.6
2,181,152	-		Xcc-8004.2230.1	0.22	-0.7
2,181,179	-		Xcc-8004.2230.1	0.26	-0.8
2,181,179	-		Xcc-8004.2230.1	0.26	-0.9
2,181,179	-		Xcc-8004.2230.1	0.26	-1.3
2,181,179	-		Xcc-8004.2230.1	0.26	-0.9
2,181,179	-		Xcc-8004.2230.1	0.26	+0.3
2,181,179	-		Xcc-8004.2230.1	0.26	+0.3
2,181,188	-		Xcc-8004.2230.1	0.27	+0.8
2,181,373	+		Xcc-8004.2230.1	0.51	-1.1
2,181,374	-		Xcc-8004.2230.1	0.52	+1.1
2,181,374	-		Xcc-8004.2230.1	0.52	-1.5
2,181,374	-		Xcc-8004.2230.1	0.52	-0.1
2,181,380	-		Xcc-8004.2230.1	0.52	-0.7
2,181,380	-		Xcc-8004.2230.1	0.52	+0.1
2,181,394	+		Xcc-8004.2230.1	0.54	+0.7
2,181,395	-		Xcc-8004.2230.1	0.54	-0.2
2,181,395	-		Xcc-8004.2230.1	0.54	+0.1
2,181,395	-		Xcc-8004.2230.1	0.54	-1.5
2,181,430	-		Xcc-8004.2230.1	0.59	-0.3
2,181,703	+				+0.4
2,181,704	-				-1.0
2,181,704	-				+3.1
2,181,791	+				-0.9
2,181,791	+				+0.1
2,181,791	+				+0.2
2,181,791	+				+0.3
2,181,797	+				-0.4
2,181,798	-				+3.1
2,181,798	-				-1.5
2,181,924	+				-1.5
2,181,924	+				-1.0
2,181,924	+				-1.4
2,181,925	-				-0.2
2,181,925	-				+0.5
2,181,925	-				+0.9
2,181,933	+				-0.4
2,181,933	+				-0.9
2,181,934	-				-0.1
2,181,934	-				-0.1