Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2225.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2224.1 and Xcc-8004.2225.1 are separated by 66 nucleotidesXcc-8004.2225.1 and Xcc-8004.2226.1 are separated by 126 nucleotides Xcc-8004.2224.1: Xcc-8004.2224.1 - tRNA-i(6)A37 methylthiotransferase, at 2,174,516 to 2,175,973 Xcc-8004.2224.1 Xcc-8004.2225.1: Xcc-8004.2225.1 - Glutathione S-transferase (EC 2.5.1.18), at 2,176,040 to 2,176,654 Xcc-8004.2225.1 Xcc-8004.2226.1: Xcc-8004.2226.1 - Transcriptional regulator, DeoR family, at 2,176,781 to 2,177,758 Xcc-8004.2226.1 Position (kb) 2176 2177Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2175.075 kb on + strand, within Xcc-8004.2224.1at 2175.075 kb on + strand, within Xcc-8004.2224.1at 2175.076 kb on - strand, within Xcc-8004.2224.1at 2175.076 kb on - strand, within Xcc-8004.2224.1at 2175.076 kb on - strand, within Xcc-8004.2224.1at 2175.148 kb on + strand, within Xcc-8004.2224.1at 2175.148 kb on + strand, within Xcc-8004.2224.1at 2175.188 kb on - strand, within Xcc-8004.2224.1at 2175.214 kb on - strand, within Xcc-8004.2224.1at 2175.214 kb on - strand, within Xcc-8004.2224.1at 2175.244 kb on - strand, within Xcc-8004.2224.1at 2175.256 kb on - strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.367 kb on + strand, within Xcc-8004.2224.1at 2175.368 kb on - strand, within Xcc-8004.2224.1at 2175.368 kb on - strand, within Xcc-8004.2224.1at 2175.368 kb on - strand, within Xcc-8004.2224.1at 2175.368 kb on - strand, within Xcc-8004.2224.1at 2175.368 kb on - strand, within Xcc-8004.2224.1at 2175.368 kb on - strand, within Xcc-8004.2224.1at 2175.368 kb on - strand, within Xcc-8004.2224.1at 2175.368 kb on - strand, within Xcc-8004.2224.1at 2175.368 kb on - strand, within Xcc-8004.2224.1at 2175.369 kb on + strand, within Xcc-8004.2224.1at 2175.370 kb on - strand, within Xcc-8004.2224.1at 2175.370 kb on - strand, within Xcc-8004.2224.1at 2175.370 kb on - strand, within Xcc-8004.2224.1at 2175.370 kb on - strand, within Xcc-8004.2224.1at 2175.370 kb on - strand, within Xcc-8004.2224.1at 2175.393 kb on + strand, within Xcc-8004.2224.1at 2175.393 kb on + strand, within Xcc-8004.2224.1at 2175.394 kb on - strand, within Xcc-8004.2224.1at 2175.394 kb on - strand, within Xcc-8004.2224.1at 2175.394 kb on - strand, within Xcc-8004.2224.1at 2175.394 kb on - strand, within Xcc-8004.2224.1at 2175.579 kb on + strand, within Xcc-8004.2224.1at 2175.580 kb on - strand, within Xcc-8004.2224.1at 2175.580 kb on - strand, within Xcc-8004.2224.1at 2175.822 kb on + strand, within Xcc-8004.2224.1at 2175.822 kb on + strand, within Xcc-8004.2224.1at 2175.822 kb on + strand, within Xcc-8004.2224.1at 2175.855 kb on + strandat 2175.855 kb on + strandat 2175.855 kb on + strandat 2175.855 kb on + strandat 2175.856 kb on - strandat 2175.856 kb on - strandat 2175.856 kb on - strandat 2175.856 kb on - strandat 2175.856 kb on - strandat 2175.856 kb on - strandat 2175.856 kb on - strandat 2175.980 kb on + strandat 2175.981 kb on - strandat 2175.993 kb on + strandat 2175.993 kb on + strandat 2175.994 kb on - strandat 2176.000 kb on + strandat 2176.104 kb on + strand, within Xcc-8004.2225.1at 2176.104 kb on + strand, within Xcc-8004.2225.1at 2176.104 kb on + strand, within Xcc-8004.2225.1at 2176.104 kb on + strand, within Xcc-8004.2225.1at 2176.105 kb on - strand, within Xcc-8004.2225.1at 2176.209 kb on + strand, within Xcc-8004.2225.1at 2176.209 kb on + strand, within Xcc-8004.2225.1at 2176.209 kb on + strand, within Xcc-8004.2225.1at 2176.209 kb on + strand, within Xcc-8004.2225.1at 2176.210 kb on - strand, within Xcc-8004.2225.1at 2176.341 kb on + strand, within Xcc-8004.2225.1at 2176.341 kb on + strand, within Xcc-8004.2225.1at 2176.341 kb on + strand, within Xcc-8004.2225.1at 2176.342 kb on - strand, within Xcc-8004.2225.1at 2176.342 kb on - strand, within Xcc-8004.2225.1at 2176.342 kb on - strand, within Xcc-8004.2225.1at 2176.342 kb on - strand, within Xcc-8004.2225.1at 2176.362 kb on + strand, within Xcc-8004.2225.1at 2176.362 kb on + strand, within Xcc-8004.2225.1at 2176.363 kb on - strand, within Xcc-8004.2225.1at 2176.363 kb on - strand, within Xcc-8004.2225.1at 2176.428 kb on + strand, within Xcc-8004.2225.1at 2176.428 kb on + strand, within Xcc-8004.2225.1at 2176.428 kb on + strand, within Xcc-8004.2225.1at 2176.428 kb on + strand, within Xcc-8004.2225.1at 2176.428 kb on + strand, within Xcc-8004.2225.1at 2176.429 kb on - strand, within Xcc-8004.2225.1at 2176.429 kb on - strand, within Xcc-8004.2225.1at 2176.429 kb on - strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.434 kb on + strand, within Xcc-8004.2225.1at 2176.435 kb on - strand, within Xcc-8004.2225.1at 2176.435 kb on - strand, within Xcc-8004.2225.1at 2176.435 kb on - strand, within Xcc-8004.2225.1at 2176.435 kb on - strand, within Xcc-8004.2225.1at 2176.435 kb on - strand, within Xcc-8004.2225.1at 2176.435 kb on - strand, within Xcc-8004.2225.1at 2176.435 kb on - strand, within Xcc-8004.2225.1at 2176.564 kb on - strand, within Xcc-8004.2225.1at 2176.564 kb on - strand, within Xcc-8004.2225.1at 2176.564 kb on - strand, within Xcc-8004.2225.1at 2176.564 kb on - strand, within Xcc-8004.2225.1at 2176.564 kb on - strand, within Xcc-8004.2225.1at 2176.648 kb on + strandat 2176.648 kb on + strandat 2176.648 kb on + strandat 2176.648 kb on + strandat 2176.648 kb on + strandat 2176.649 kb on - strandat 2176.649 kb on - strandat 2176.649 kb on - strandat 2176.694 kb on + strandat 2176.694 kb on + strandat 2176.694 kb on + strandat 2176.694 kb on + strandat 2176.694 kb on + strandat 2176.695 kb on - strandat 2176.695 kb on - strandat 2176.695 kb on - strandat 2176.695 kb on - strandat 2176.695 kb on - strandat 2176.701 kb on + strandat 2176.701 kb on + strandat 2176.702 kb on - strandat 2176.702 kb on - strandat 2176.702 kb on - strandat 2176.727 kb on + strandat 2176.728 kb on - strandat 2176.728 kb on - strandat 2176.728 kb on - strandat 2176.728 kb on - strandat 2176.728 kb on - strandat 2176.858 kb on + strandat 2177.276 kb on + strand, within Xcc-8004.2226.1at 2177.276 kb on + strand, within Xcc-8004.2226.1at 2177.276 kb on + strand, within Xcc-8004.2226.1at 2177.276 kb on + strand, within Xcc-8004.2226.1at 2177.276 kb on + strand, within Xcc-8004.2226.1at 2177.276 kb on + strand, within Xcc-8004.2226.1at 2177.276 kb on + strand, within Xcc-8004.2226.1at 2177.276 kb on + strand, within Xcc-8004.2226.1at 2177.277 kb on - strand, within Xcc-8004.2226.1at 2177.277 kb on - strand, within Xcc-8004.2226.1at 2177.277 kb on - strand, within Xcc-8004.2226.1at 2177.277 kb on - strand, within Xcc-8004.2226.1at 2177.277 kb on - strand, within Xcc-8004.2226.1at 2177.277 kb on - strand, within Xcc-8004.2226.1at 2177.277 kb on - strand, within Xcc-8004.2226.1at 2177.291 kb on + strand, within Xcc-8004.2226.1at 2177.292 kb on - strand, within Xcc-8004.2226.1at 2177.292 kb on - strand, within Xcc-8004.2226.1at 2177.292 kb on - strand, within Xcc-8004.2226.1at 2177.292 kb on - strand, within Xcc-8004.2226.1at 2177.292 kb on - strand, within Xcc-8004.2226.1at 2177.292 kb on - strand, within Xcc-8004.2226.1at 2177.292 kb on - strand, within Xcc-8004.2226.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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2,175,075 + Xcc-8004.2224.1 0.38 -0.5
2,175,075 + Xcc-8004.2224.1 0.38 -0.2
2,175,076 - Xcc-8004.2224.1 0.38 +0.5
2,175,076 - Xcc-8004.2224.1 0.38 -0.7
2,175,076 - Xcc-8004.2224.1 0.38 +0.1
2,175,148 + Xcc-8004.2224.1 0.43 +2.1
2,175,148 + Xcc-8004.2224.1 0.43 -1.2
2,175,188 - Xcc-8004.2224.1 0.46 -1.4
2,175,214 - Xcc-8004.2224.1 0.48 -1.1
2,175,214 - Xcc-8004.2224.1 0.48 -1.7
2,175,244 - Xcc-8004.2224.1 0.50 -0.4
2,175,256 - Xcc-8004.2224.1 0.51 +0.1
2,175,367 + Xcc-8004.2224.1 0.58 -0.2
2,175,367 + Xcc-8004.2224.1 0.58 +0.2
2,175,367 + Xcc-8004.2224.1 0.58 -0.5
2,175,367 + Xcc-8004.2224.1 0.58 -1.5
2,175,367 + Xcc-8004.2224.1 0.58 -1.2
2,175,367 + Xcc-8004.2224.1 0.58 +0.0
2,175,367 + Xcc-8004.2224.1 0.58 +0.1
2,175,367 + Xcc-8004.2224.1 0.58 -0.1
2,175,367 + Xcc-8004.2224.1 0.58 -0.9
2,175,367 + Xcc-8004.2224.1 0.58 -1.7
2,175,367 + Xcc-8004.2224.1 0.58 -0.7
2,175,367 + Xcc-8004.2224.1 0.58 +1.1
2,175,367 + Xcc-8004.2224.1 0.58 -1.3
2,175,367 + Xcc-8004.2224.1 0.58 -1.5
2,175,367 + Xcc-8004.2224.1 0.58 -1.0
2,175,368 - Xcc-8004.2224.1 0.58 +0.6
2,175,368 - Xcc-8004.2224.1 0.58 -1.9
2,175,368 - Xcc-8004.2224.1 0.58 -1.7
2,175,368 - Xcc-8004.2224.1 0.58 +1.3
2,175,368 - Xcc-8004.2224.1 0.58 -0.1
2,175,368 - Xcc-8004.2224.1 0.58 -1.7
2,175,368 - Xcc-8004.2224.1 0.58 -1.0
2,175,368 - Xcc-8004.2224.1 0.58 +0.2
2,175,368 - Xcc-8004.2224.1 0.58 +0.9
2,175,369 + Xcc-8004.2224.1 0.59 +0.9
2,175,370 - Xcc-8004.2224.1 0.59 +0.2
2,175,370 - Xcc-8004.2224.1 0.59 +0.8
2,175,370 - Xcc-8004.2224.1 0.59 -0.4
2,175,370 - Xcc-8004.2224.1 0.59 +0.8
2,175,370 - Xcc-8004.2224.1 0.59 +0.9
2,175,393 + Xcc-8004.2224.1 0.60 +1.5
2,175,393 + Xcc-8004.2224.1 0.60 -0.5
2,175,394 - Xcc-8004.2224.1 0.60 -0.6
2,175,394 - Xcc-8004.2224.1 0.60 +0.3
2,175,394 - Xcc-8004.2224.1 0.60 -3.3
2,175,394 - Xcc-8004.2224.1 0.60 -1.5
2,175,579 + Xcc-8004.2224.1 0.73 -0.5
2,175,580 - Xcc-8004.2224.1 0.73 -0.5
2,175,580 - Xcc-8004.2224.1 0.73 +0.4
2,175,822 + Xcc-8004.2224.1 0.90 -0.1
2,175,822 + Xcc-8004.2224.1 0.90 +0.3
2,175,822 + Xcc-8004.2224.1 0.90 +0.6
2,175,855 + +0.7
2,175,855 + -1.4
2,175,855 + -0.1
2,175,855 + +0.2
2,175,856 - -0.9
2,175,856 - -2.3
2,175,856 - -1.4
2,175,856 - -2.1
2,175,856 - +0.3
2,175,856 - -1.7
2,175,856 - -1.5
2,175,980 + -1.2
2,175,981 - +0.1
2,175,993 + +0.2
2,175,993 + -1.9
2,175,994 - +0.2
2,176,000 + -0.6
2,176,104 + Xcc-8004.2225.1 0.10 +1.3
2,176,104 + Xcc-8004.2225.1 0.10 -0.3
2,176,104 + Xcc-8004.2225.1 0.10 -1.1
2,176,104 + Xcc-8004.2225.1 0.10 +0.8
2,176,105 - Xcc-8004.2225.1 0.11 +0.4
2,176,209 + Xcc-8004.2225.1 0.27 +0.5
2,176,209 + Xcc-8004.2225.1 0.27 +0.3
2,176,209 + Xcc-8004.2225.1 0.27 -1.1
2,176,209 + Xcc-8004.2225.1 0.27 +1.0
2,176,210 - Xcc-8004.2225.1 0.28 +1.4
2,176,341 + Xcc-8004.2225.1 0.49 -0.4
2,176,341 + Xcc-8004.2225.1 0.49 -0.1
2,176,341 + Xcc-8004.2225.1 0.49 +0.8
2,176,342 - Xcc-8004.2225.1 0.49 +0.7
2,176,342 - Xcc-8004.2225.1 0.49 +0.5
2,176,342 - Xcc-8004.2225.1 0.49 -0.6
2,176,342 - Xcc-8004.2225.1 0.49 +0.1
2,176,362 + Xcc-8004.2225.1 0.52 +0.3
2,176,362 + Xcc-8004.2225.1 0.52 +0.4
2,176,363 - Xcc-8004.2225.1 0.53 +0.0
2,176,363 - Xcc-8004.2225.1 0.53 +1.1
2,176,428 + Xcc-8004.2225.1 0.63 +1.3
2,176,428 + Xcc-8004.2225.1 0.63 +1.0
2,176,428 + Xcc-8004.2225.1 0.63 +0.2
2,176,428 + Xcc-8004.2225.1 0.63 -0.8
2,176,428 + Xcc-8004.2225.1 0.63 -1.8
2,176,429 - Xcc-8004.2225.1 0.63 -1.4
2,176,429 - Xcc-8004.2225.1 0.63 -0.5
2,176,429 - Xcc-8004.2225.1 0.63 +1.3
2,176,434 + Xcc-8004.2225.1 0.64 +0.1
2,176,434 + Xcc-8004.2225.1 0.64 -0.8
2,176,434 + Xcc-8004.2225.1 0.64 -0.5
2,176,434 + Xcc-8004.2225.1 0.64 -2.2
2,176,434 + Xcc-8004.2225.1 0.64 -1.3
2,176,434 + Xcc-8004.2225.1 0.64 +1.5
2,176,434 + Xcc-8004.2225.1 0.64 -0.1
2,176,434 + Xcc-8004.2225.1 0.64 +0.4
2,176,434 + Xcc-8004.2225.1 0.64 +0.8
2,176,434 + Xcc-8004.2225.1 0.64 -0.3
2,176,434 + Xcc-8004.2225.1 0.64 +0.5
2,176,434 + Xcc-8004.2225.1 0.64 +0.7
2,176,434 + Xcc-8004.2225.1 0.64 -0.9
2,176,434 + Xcc-8004.2225.1 0.64 -0.4
2,176,434 + Xcc-8004.2225.1 0.64 -0.3
2,176,434 + Xcc-8004.2225.1 0.64 -0.4
2,176,435 - Xcc-8004.2225.1 0.64 +0.4
2,176,435 - Xcc-8004.2225.1 0.64 +0.3
2,176,435 - Xcc-8004.2225.1 0.64 -0.1
2,176,435 - Xcc-8004.2225.1 0.64 +0.3
2,176,435 - Xcc-8004.2225.1 0.64 -0.0
2,176,435 - Xcc-8004.2225.1 0.64 -0.8
2,176,435 - Xcc-8004.2225.1 0.64 -1.1
2,176,564 - Xcc-8004.2225.1 0.85 -0.2
2,176,564 - Xcc-8004.2225.1 0.85 -0.9
2,176,564 - Xcc-8004.2225.1 0.85 +0.7
2,176,564 - Xcc-8004.2225.1 0.85 +0.1
2,176,564 - Xcc-8004.2225.1 0.85 +0.4
2,176,648 + -1.7
2,176,648 + +0.3
2,176,648 + +2.3
2,176,648 + +1.1
2,176,648 + +0.0
2,176,649 - -0.3
2,176,649 - +0.6
2,176,649 - +0.4
2,176,694 + -0.4
2,176,694 + -0.3
2,176,694 + -0.7
2,176,694 + -0.0
2,176,694 + -1.4
2,176,695 - +0.4
2,176,695 - +0.1
2,176,695 - -0.7
2,176,695 - -0.8
2,176,695 - +0.8
2,176,701 + -0.7
2,176,701 + +0.3
2,176,702 - +0.4
2,176,702 - -1.2
2,176,702 - +0.2
2,176,727 + -0.8
2,176,728 - +1.2
2,176,728 - +0.5
2,176,728 - +1.5
2,176,728 - -0.1
2,176,728 - -0.4
2,176,858 + +0.6
2,177,276 + Xcc-8004.2226.1 0.51 -0.1
2,177,276 + Xcc-8004.2226.1 0.51 -0.4
2,177,276 + Xcc-8004.2226.1 0.51 -0.9
2,177,276 + Xcc-8004.2226.1 0.51 -0.3
2,177,276 + Xcc-8004.2226.1 0.51 +1.2
2,177,276 + Xcc-8004.2226.1 0.51 -0.9
2,177,276 + Xcc-8004.2226.1 0.51 -0.8
2,177,276 + Xcc-8004.2226.1 0.51 +0.9
2,177,277 - Xcc-8004.2226.1 0.51 +0.2
2,177,277 - Xcc-8004.2226.1 0.51 +1.4
2,177,277 - Xcc-8004.2226.1 0.51 +1.4
2,177,277 - Xcc-8004.2226.1 0.51 +0.2
2,177,277 - Xcc-8004.2226.1 0.51 +0.8
2,177,277 - Xcc-8004.2226.1 0.51 -0.1
2,177,277 - Xcc-8004.2226.1 0.51 -0.8
2,177,291 + Xcc-8004.2226.1 0.52 +0.9
2,177,292 - Xcc-8004.2226.1 0.52 -1.5
2,177,292 - Xcc-8004.2226.1 0.52 -0.5
2,177,292 - Xcc-8004.2226.1 0.52 -0.5
2,177,292 - Xcc-8004.2226.1 0.52 -1.1
2,177,292 - Xcc-8004.2226.1 0.52 -1.0
2,177,292 - Xcc-8004.2226.1 0.52 +0.0
2,177,292 - Xcc-8004.2226.1 0.52 +1.5

Or see this region's nucleotide sequence