Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2214.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,164,164	+				-1.4
2,164,164	+				-1.0
2,164,165	-				+0.8
2,164,177	+				+1.6
2,164,178	-				-0.4
2,164,289	-				-0.4
2,164,321	+		Xcc-8004.2213.1	0.13	-0.0
2,164,322	-		Xcc-8004.2213.1	0.13	-0.5
2,164,545	+		Xcc-8004.2213.1	0.67	-1.7
2,164,545	+		Xcc-8004.2213.1	0.67	+0.2
2,164,650	+				+0.1
2,164,650	+				-1.1
2,164,651	-				-1.2
2,164,651	-				+0.6
2,164,725	+				-0.3
2,164,725	+				-1.9
2,164,725	+				+1.2
2,164,726	-				-0.2
2,164,761	-				-0.4
2,164,912	+				-0.3
2,164,912	+				+0.8
2,164,928	+				-0.5
2,164,928	+				-0.5
2,164,928	+				+0.3
2,164,949	+				-1.8
2,164,949	+				+0.8
2,164,988	-				+0.5
2,165,220	-		Xcc-8004.2214.1	0.20	+2.4
2,165,244	-		Xcc-8004.2214.1	0.22	-1.8
2,165,285	+		Xcc-8004.2214.1	0.25	-0.3
2,165,285	+		Xcc-8004.2214.1	0.25	+0.7
2,165,286	-		Xcc-8004.2214.1	0.25	+0.2
2,165,286	-		Xcc-8004.2214.1	0.25	-0.7
2,165,286	-		Xcc-8004.2214.1	0.25	-0.2
2,165,452	-		Xcc-8004.2214.1	0.37	+0.9
2,165,452	-		Xcc-8004.2214.1	0.37	-1.1
2,165,495	-		Xcc-8004.2214.1	0.40	+0.2
2,165,591	-		Xcc-8004.2214.1	0.47	-2.4
2,166,008	+		Xcc-8004.2214.1	0.78	+1.3
2,166,204	+				-0.3
2,166,204	+				+1.6
2,166,204	+				+0.4
2,166,204	+				+0.2
2,166,204	+				-0.8
2,166,204	+				+1.9
2,166,204	+				+0.5
2,166,204	+				-0.2
2,166,205	-				-2.3
2,166,205	-				-1.8
2,166,283	+				+0.6
2,166,283	+				-0.3
2,166,297	-				-0.8
2,166,297	-				+0.2
2,166,297	-				+0.0
2,166,297	-				-0.2
2,166,448	-				+0.4
2,166,448	-				+0.5
2,166,469	+				-0.6
2,166,741	+		Xcc-8004.2215.1	0.78	+0.4
2,166,985	+				+1.5
2,167,008	+				+0.2
2,167,009	-				-0.2
2,167,149	-				+0.6
2,167,149	-				+0.0
2,167,203	-				-0.7
2,167,277	+				-1.4
2,167,305	+		Xcc-8004.2216.1	0.10	+0.6
2,167,305	+		Xcc-8004.2216.1	0.10	-2.4
2,167,306	-		Xcc-8004.2216.1	0.11	-1.3