Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2164.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,093,766	+		Xcc-8004.2163.1	0.50	+0.8
2,093,766	+		Xcc-8004.2163.1	0.50	-2.2
2,093,766	+		Xcc-8004.2163.1	0.50	+0.5
2,093,767	-		Xcc-8004.2163.1	0.50	+1.0
2,093,877	+		Xcc-8004.2163.1	0.58	-1.5
2,093,877	+		Xcc-8004.2163.1	0.58	+0.5
2,093,877	+		Xcc-8004.2163.1	0.58	+0.4
2,093,877	+		Xcc-8004.2163.1	0.58	-0.1
2,093,878	-		Xcc-8004.2163.1	0.58	+0.3
2,093,878	-		Xcc-8004.2163.1	0.58	+0.4
2,094,098	+		Xcc-8004.2163.1	0.73	-1.3
2,094,098	+		Xcc-8004.2163.1	0.73	+0.3
2,094,098	+		Xcc-8004.2163.1	0.73	+0.7
2,094,099	-		Xcc-8004.2163.1	0.74	+1.6
2,094,099	-		Xcc-8004.2163.1	0.74	+0.4
2,094,099	-		Xcc-8004.2163.1	0.74	+0.6
2,094,131	+		Xcc-8004.2163.1	0.76	-1.0
2,094,131	+		Xcc-8004.2163.1	0.76	-0.6
2,094,131	+		Xcc-8004.2163.1	0.76	-0.3
2,094,131	+		Xcc-8004.2163.1	0.76	-0.9
2,094,131	+		Xcc-8004.2163.1	0.76	-0.9
2,094,131	+		Xcc-8004.2163.1	0.76	-0.6
2,094,131	+		Xcc-8004.2163.1	0.76	+0.1
2,094,131	+		Xcc-8004.2163.1	0.76	+0.1
2,094,131	+		Xcc-8004.2163.1	0.76	-2.0
2,094,131	+		Xcc-8004.2163.1	0.76	+0.9
2,094,131	+		Xcc-8004.2163.1	0.76	+0.3
2,094,131	+		Xcc-8004.2163.1	0.76	+0.5
2,094,131	+		Xcc-8004.2163.1	0.76	-0.9
2,094,132	-		Xcc-8004.2163.1	0.76	-0.0
2,094,132	-		Xcc-8004.2163.1	0.76	-0.6
2,094,132	-		Xcc-8004.2163.1	0.76	-0.8
2,094,132	-		Xcc-8004.2163.1	0.76	-1.3
2,094,132	-		Xcc-8004.2163.1	0.76	-0.5
2,094,132	-		Xcc-8004.2163.1	0.76	+0.4
2,094,132	-		Xcc-8004.2163.1	0.76	-1.2
2,094,132	-		Xcc-8004.2163.1	0.76	-0.3
2,094,132	-		Xcc-8004.2163.1	0.76	-0.5
2,094,135	+		Xcc-8004.2163.1	0.76	-1.7
2,094,135	+		Xcc-8004.2163.1	0.76	-0.9
2,094,136	-		Xcc-8004.2163.1	0.76	+0.8
2,094,136	-		Xcc-8004.2163.1	0.76	+0.0
2,094,136	-		Xcc-8004.2163.1	0.76	-1.0
2,094,136	-		Xcc-8004.2163.1	0.76	-0.3
2,094,136	-		Xcc-8004.2163.1	0.76	+1.5
2,094,207	+		Xcc-8004.2163.1	0.81	-1.0
2,094,267	+		Xcc-8004.2163.1	0.86	+0.3
2,094,267	+		Xcc-8004.2163.1	0.86	-1.4
2,094,267	+		Xcc-8004.2163.1	0.86	-0.4
2,094,268	-		Xcc-8004.2163.1	0.86	-0.8
2,094,268	-		Xcc-8004.2163.1	0.86	-1.1
2,094,268	-		Xcc-8004.2163.1	0.86	+0.7
2,094,268	-		Xcc-8004.2163.1	0.86	+0.4
2,094,304	-		Xcc-8004.2163.1	0.88	-0.4
2,094,304	-		Xcc-8004.2163.1	0.88	-1.0
2,094,304	-		Xcc-8004.2163.1	0.88	-1.0
2,094,304	-		Xcc-8004.2163.1	0.88	+2.0
2,094,333	+				+0.1
2,094,333	+				+0.3
2,094,333	+				+0.8
2,094,333	+				-1.2
2,094,333	+				+0.1
2,094,333	+				-0.1
2,094,333	+				-0.4
2,094,334	-				-0.0
2,094,473	-				-1.1
2,094,473	-				+0.2
2,094,473	-				-0.9
2,094,473	-				+0.2
2,094,476	+				+0.1
2,094,476	+				-0.6
2,094,476	+				-0.4
2,094,476	+				+0.6
2,094,477	-				-1.4
2,094,477	-				+0.9
2,094,477	-				-0.2
2,094,477	-				+0.3
2,094,865	+		Xcc-8004.2164.1	0.31	-0.2
2,094,865	+		Xcc-8004.2164.1	0.31	-0.7
2,094,865	+		Xcc-8004.2164.1	0.31	-0.0
2,094,865	+		Xcc-8004.2164.1	0.31	-1.0
2,094,865	+		Xcc-8004.2164.1	0.31	-1.4
2,094,865	+		Xcc-8004.2164.1	0.31	+0.6
2,094,865	+		Xcc-8004.2164.1	0.31	-0.2
2,094,865	+		Xcc-8004.2164.1	0.31	+0.9
2,094,865	+		Xcc-8004.2164.1	0.31	-1.6
2,094,865	+		Xcc-8004.2164.1	0.31	-0.3
2,094,865	+		Xcc-8004.2164.1	0.31	+0.7
2,094,866	-		Xcc-8004.2164.1	0.31	-0.4
2,094,866	-		Xcc-8004.2164.1	0.31	-0.7
2,094,866	-		Xcc-8004.2164.1	0.31	+0.0
2,094,866	-		Xcc-8004.2164.1	0.31	-1.3
2,094,866	-		Xcc-8004.2164.1	0.31	+0.0
2,094,866	-		Xcc-8004.2164.1	0.31	-0.8
2,094,866	-		Xcc-8004.2164.1	0.31	-0.3
2,094,877	+		Xcc-8004.2164.1	0.33	+0.4
2,094,878	-		Xcc-8004.2164.1	0.33	-0.7
2,094,889	+		Xcc-8004.2164.1	0.35	-0.2
2,094,889	+		Xcc-8004.2164.1	0.35	-1.5
2,094,889	+		Xcc-8004.2164.1	0.35	-0.3
2,094,890	-		Xcc-8004.2164.1	0.35	-1.2
2,094,904	+		Xcc-8004.2164.1	0.37	-0.7
2,094,904	+		Xcc-8004.2164.1	0.37	+0.2
2,094,904	+		Xcc-8004.2164.1	0.37	+0.7
2,094,904	+		Xcc-8004.2164.1	0.37	+0.0
2,094,905	-		Xcc-8004.2164.1	0.37	-0.9
2,094,906	+		Xcc-8004.2164.1	0.37	-0.1
2,094,906	+		Xcc-8004.2164.1	0.37	-1.3
2,094,906	+		Xcc-8004.2164.1	0.37	-1.5
2,094,907	-		Xcc-8004.2164.1	0.37	+0.5
2,094,907	-		Xcc-8004.2164.1	0.37	+3.1
2,094,907	-		Xcc-8004.2164.1	0.37	+0.3
2,094,907	-		Xcc-8004.2164.1	0.37	-0.0
2,094,907	-		Xcc-8004.2164.1	0.37	+0.1
2,095,144	+		Xcc-8004.2164.1	0.71	+0.0
2,095,144	+		Xcc-8004.2164.1	0.71	-0.6
2,095,145	-		Xcc-8004.2164.1	0.71	+0.4
2,095,145	-		Xcc-8004.2164.1	0.71	-0.4
2,095,145	-		Xcc-8004.2164.1	0.71	-2.3
2,095,145	-		Xcc-8004.2164.1	0.71	+0.1
2,095,145	-		Xcc-8004.2164.1	0.71	+0.3
2,095,145	-		Xcc-8004.2164.1	0.71	-0.6
2,095,145	-		Xcc-8004.2164.1	0.71	-0.2
2,095,315	+				-1.0
2,095,315	+				+0.7
2,095,315	+				+0.0
2,095,315	+				-0.7
2,095,315	+				-0.3
2,095,316	-				+0.1
2,095,316	-				-0.1
2,095,316	-				+0.3
2,095,316	-				+0.4
2,095,316	-				-1.7
2,095,316	-				+0.4
2,095,316	-				+0.2
2,095,316	-				+0.7
2,095,367	-				+0.0
2,095,367	-				-0.9
2,095,367	-				+0.3
2,095,367	-				-2.4
2,095,377	+				-1.9
2,095,377	+				-0.8
2,095,377	+				-0.5
2,095,378	-				-0.7
2,095,590	+				+0.4
2,095,590	+				+0.3
2,095,590	+				+0.6
2,095,591	-				-0.1
2,095,591	-				-0.9
2,095,591	-				+0.3
2,095,591	-				+1.0
2,095,591	-				+1.2
2,095,591	-				-1.0
2,095,773	+		Xcc-8004.2165.1	0.11	-0.7
2,095,774	-		Xcc-8004.2165.1	0.11	-0.7
2,095,787	+		Xcc-8004.2165.1	0.12	+0.4
2,095,787	+		Xcc-8004.2165.1	0.12	-0.5
2,095,788	-		Xcc-8004.2165.1	0.12	+0.5
2,095,788	-		Xcc-8004.2165.1	0.12	-0.2
2,095,788	-		Xcc-8004.2165.1	0.12	-1.0
2,095,788	-		Xcc-8004.2165.1	0.12	+0.1
2,095,788	-		Xcc-8004.2165.1	0.12	+0.3
2,095,796	+		Xcc-8004.2165.1	0.13	-0.2
2,095,796	+		Xcc-8004.2165.1	0.13	+0.7
2,095,796	+		Xcc-8004.2165.1	0.13	-0.4
2,095,796	+		Xcc-8004.2165.1	0.13	-0.4
2,095,796	+		Xcc-8004.2165.1	0.13	-1.0
2,095,796	+		Xcc-8004.2165.1	0.13	-1.2
2,095,796	+		Xcc-8004.2165.1	0.13	-1.7
2,095,796	+		Xcc-8004.2165.1	0.13	+0.4
2,095,797	-		Xcc-8004.2165.1	0.13	+1.3
2,095,797	-		Xcc-8004.2165.1	0.13	-0.2
2,095,797	-		Xcc-8004.2165.1	0.13	-0.3
2,095,797	-		Xcc-8004.2165.1	0.13	-0.8
2,095,797	-		Xcc-8004.2165.1	0.13	-0.1
2,095,986	+		Xcc-8004.2165.1	0.26	+0.3
2,095,987	-		Xcc-8004.2165.1	0.26	-2.1
2,095,987	-		Xcc-8004.2165.1	0.26	-1.2
2,095,987	-		Xcc-8004.2165.1	0.26	+0.3
2,095,987	-		Xcc-8004.2165.1	0.26	+0.6
2,096,003	+		Xcc-8004.2165.1	0.27	-0.6
2,096,003	+		Xcc-8004.2165.1	0.27	+3.7
2,096,003	+		Xcc-8004.2165.1	0.27	-0.4
2,096,004	-		Xcc-8004.2165.1	0.27	+2.7
2,096,004	-		Xcc-8004.2165.1	0.27	-0.2
2,096,004	-		Xcc-8004.2165.1	0.27	-0.7
2,096,004	-		Xcc-8004.2165.1	0.27	-0.8
2,096,004	-		Xcc-8004.2165.1	0.27	+0.2
2,096,090	+		Xcc-8004.2165.1	0.33	+0.0
2,096,090	+		Xcc-8004.2165.1	0.33	-0.5
2,096,091	-		Xcc-8004.2165.1	0.33	+0.4
2,096,091	-		Xcc-8004.2165.1	0.33	+0.5
2,096,091	-		Xcc-8004.2165.1	0.33	-0.4
2,096,091	-		Xcc-8004.2165.1	0.33	-0.3
2,096,091	-		Xcc-8004.2165.1	0.33	+0.4
2,096,091	-		Xcc-8004.2165.1	0.33	+0.1
2,096,234	+		Xcc-8004.2165.1	0.42	-0.1
2,096,234	+		Xcc-8004.2165.1	0.42	+0.3
2,096,234	+		Xcc-8004.2165.1	0.42	+0.5
2,096,234	+		Xcc-8004.2165.1	0.42	-0.5
2,096,234	+		Xcc-8004.2165.1	0.42	-0.9
2,096,234	+		Xcc-8004.2165.1	0.42	-0.4
2,096,235	-		Xcc-8004.2165.1	0.42	-0.6
2,096,235	-		Xcc-8004.2165.1	0.42	+0.1
2,096,235	-		Xcc-8004.2165.1	0.42	+0.1
2,096,235	-		Xcc-8004.2165.1	0.42	-2.0