Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2034.1 and Xcc-8004.2038.1 are separated by 574 nucleotides Xcc-8004.2038.1 and Xcc-8004.2039.1 are separated by 33 nucleotides
Xcc-8004.2034.1: Xcc-8004.2034.1 - Excinuclease ABC subunit B, at 1,953,215 to 1,955,236
Xcc-8004.2034.1
Xcc-8004.2038.1: Xcc-8004.2038.1 - FIG01210607: hypothetical protein, at 1,955,811 to 1,956,053
Xcc-8004.2038.1
Xcc-8004.2039.1: Xcc-8004.2039.1 - hypothetical protein, at 1,956,087 to 1,957,760
Xcc-8004.2039.1
Position (kb) 1955
1956
1957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1954.871 kb on + strand, within Xcc-8004.2034.1 at 1954.872 kb on - strand, within Xcc-8004.2034.1 at 1954.872 kb on - strand, within Xcc-8004.2034.1 at 1954.946 kb on + strand, within Xcc-8004.2034.1 at 1954.946 kb on + strand, within Xcc-8004.2034.1 at 1954.947 kb on - strand, within Xcc-8004.2034.1 at 1954.947 kb on - strand, within Xcc-8004.2034.1 at 1954.947 kb on - strand, within Xcc-8004.2034.1 at 1954.947 kb on - strand, within Xcc-8004.2034.1 at 1955.150 kb on + strand at 1955.150 kb on + strand at 1955.150 kb on + strand at 1955.150 kb on + strand at 1955.150 kb on + strand at 1955.150 kb on + strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.151 kb on - strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.411 kb on + strand at 1955.412 kb on - strand at 1955.412 kb on - strand at 1955.499 kb on + strand at 1955.500 kb on - strand at 1955.527 kb on + strand at 1955.527 kb on + strand at 1955.528 kb on - strand at 1955.625 kb on + strand at 1955.665 kb on + strand at 1955.665 kb on + strand at 1955.665 kb on + strand at 1955.665 kb on + strand at 1955.665 kb on + strand at 1955.666 kb on - strand at 1955.666 kb on - strand at 1955.675 kb on + strand at 1955.676 kb on - strand at 1955.676 kb on - strand at 1955.772 kb on + strand at 1955.772 kb on + strand at 1955.772 kb on + strand at 1955.772 kb on + strand at 1955.773 kb on - strand at 1955.773 kb on - strand at 1955.773 kb on - strand at 1955.773 kb on - strand at 1955.820 kb on + strand at 1955.820 kb on + strand at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.883 kb on + strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.884 kb on - strand, within Xcc-8004.2038.1 at 1955.907 kb on + strand, within Xcc-8004.2038.1 at 1955.908 kb on - strand, within Xcc-8004.2038.1 at 1955.908 kb on - strand, within Xcc-8004.2038.1 at 1955.908 kb on - strand, within Xcc-8004.2038.1 at 1955.908 kb on - strand, within Xcc-8004.2038.1 at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.041 kb on + strand at 1956.042 kb on - strand at 1956.042 kb on - strand at 1956.042 kb on - strand at 1956.042 kb on - strand at 1956.042 kb on - strand at 1956.142 kb on - strand at 1956.172 kb on + strand at 1956.172 kb on + strand at 1956.173 kb on - strand at 1956.173 kb on - strand at 1956.173 kb on - strand at 1956.195 kb on + strand at 1956.195 kb on + strand at 1956.195 kb on + strand at 1956.196 kb on - strand at 1956.196 kb on - strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.210 kb on + strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.211 kb on - strand at 1956.213 kb on + strand at 1956.213 kb on + strand at 1956.213 kb on + strand at 1956.214 kb on - strand at 1956.219 kb on + strand at 1956.219 kb on + strand at 1956.219 kb on + strand at 1956.220 kb on - strand at 1956.220 kb on - strand at 1956.220 kb on - strand at 1956.220 kb on - strand at 1956.220 kb on - strand at 1956.255 kb on + strand, within Xcc-8004.2039.1 at 1956.255 kb on + strand, within Xcc-8004.2039.1 at 1956.255 kb on + strand, within Xcc-8004.2039.1 at 1956.256 kb on - strand, within Xcc-8004.2039.1 at 1956.256 kb on - strand, within Xcc-8004.2039.1 at 1956.256 kb on - strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.436 kb on + strand, within Xcc-8004.2039.1 at 1956.437 kb on - strand, within Xcc-8004.2039.1 at 1956.437 kb on - strand, within Xcc-8004.2039.1 at 1956.437 kb on - strand, within Xcc-8004.2039.1 at 1956.437 kb on - strand, within Xcc-8004.2039.1 at 1956.437 kb on - strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.696 kb on + strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.697 kb on - strand, within Xcc-8004.2039.1 at 1956.756 kb on + strand, within Xcc-8004.2039.1 at 1956.828 kb on + strand, within Xcc-8004.2039.1 at 1956.828 kb on + strand, within Xcc-8004.2039.1 at 1956.828 kb on + strand, within Xcc-8004.2039.1 at 1956.828 kb on + strand, within Xcc-8004.2039.1 at 1956.828 kb on + strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.829 kb on - strand, within Xcc-8004.2039.1 at 1956.890 kb on + strand, within Xcc-8004.2039.1 at 1956.890 kb on + strand, within Xcc-8004.2039.1 at 1956.891 kb on - strand, within Xcc-8004.2039.1 at 1956.891 kb on - strand, within Xcc-8004.2039.1 at 1956.891 kb on - strand, within Xcc-8004.2039.1 at 1956.906 kb on + strand, within Xcc-8004.2039.1 at 1956.907 kb on - strand, within Xcc-8004.2039.1 at 1956.907 kb on - strand, within Xcc-8004.2039.1 at 1956.907 kb on - strand, within Xcc-8004.2039.1 at 1956.946 kb on - strand, within Xcc-8004.2039.1 at 1956.946 kb on - strand, within Xcc-8004.2039.1 at 1956.946 kb on - strand, within Xcc-8004.2039.1
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 1,954,871 + Xcc-8004.2034.1 0.82 -1.5 1,954,872 - Xcc-8004.2034.1 0.82 -0.3 1,954,872 - Xcc-8004.2034.1 0.82 -1.3 1,954,946 + Xcc-8004.2034.1 0.86 -2.2 1,954,946 + Xcc-8004.2034.1 0.86 -1.6 1,954,947 - Xcc-8004.2034.1 0.86 +1.9 1,954,947 - Xcc-8004.2034.1 0.86 -1.2 1,954,947 - Xcc-8004.2034.1 0.86 -0.9 1,954,947 - Xcc-8004.2034.1 0.86 +1.7 1,955,150 + -0.9 1,955,150 + +0.4 1,955,150 + -1.6 1,955,150 + -1.3 1,955,150 + -1.3 1,955,150 + -1.1 1,955,151 - -1.2 1,955,151 - -1.5 1,955,151 - -2.3 1,955,151 - +0.7 1,955,151 - -1.0 1,955,151 - -0.1 1,955,151 - -0.4 1,955,151 - -0.7 1,955,151 - +0.8 1,955,151 - +0.3 1,955,411 + +0.9 1,955,411 + -0.1 1,955,411 + -0.4 1,955,411 + -0.6 1,955,411 + +0.7 1,955,411 + -0.2 1,955,411 + +0.0 1,955,412 - -0.0 1,955,412 - +2.5 1,955,499 + +0.9 1,955,500 - -1.0 1,955,527 + +0.4 1,955,527 + -0.9 1,955,528 - +0.8 1,955,625 + +1.4 1,955,665 + -0.5 1,955,665 + +0.5 1,955,665 + +0.5 1,955,665 + +1.4 1,955,665 + -0.8 1,955,666 - -1.2 1,955,666 - -1.0 1,955,675 + -2.4 1,955,676 - -2.0 1,955,676 - +1.2 1,955,772 + -1.0 1,955,772 + +0.2 1,955,772 + -1.1 1,955,772 + +0.6 1,955,773 - +0.7 1,955,773 - +0.9 1,955,773 - -0.1 1,955,773 - -0.9 1,955,820 + -0.6 1,955,820 + +0.6 1,955,883 + Xcc-8004.2038.1 0.30 +0.2 1,955,883 + Xcc-8004.2038.1 0.30 +0.2 1,955,883 + Xcc-8004.2038.1 0.30 +1.3 1,955,883 + Xcc-8004.2038.1 0.30 +0.1 1,955,883 + Xcc-8004.2038.1 0.30 +1.0 1,955,883 + Xcc-8004.2038.1 0.30 -0.3 1,955,883 + Xcc-8004.2038.1 0.30 +0.5 1,955,883 + Xcc-8004.2038.1 0.30 +0.1 1,955,883 + Xcc-8004.2038.1 0.30 -0.0 1,955,883 + Xcc-8004.2038.1 0.30 -0.1 1,955,883 + Xcc-8004.2038.1 0.30 -0.2 1,955,883 + Xcc-8004.2038.1 0.30 +1.5 1,955,883 + Xcc-8004.2038.1 0.30 -0.3 1,955,883 + Xcc-8004.2038.1 0.30 +1.2 1,955,884 - Xcc-8004.2038.1 0.30 -0.8 1,955,884 - Xcc-8004.2038.1 0.30 +1.3 1,955,884 - Xcc-8004.2038.1 0.30 -0.6 1,955,884 - Xcc-8004.2038.1 0.30 -0.2 1,955,884 - Xcc-8004.2038.1 0.30 +0.0 1,955,884 - Xcc-8004.2038.1 0.30 +0.8 1,955,884 - Xcc-8004.2038.1 0.30 +0.0 1,955,884 - Xcc-8004.2038.1 0.30 +1.3 1,955,907 + Xcc-8004.2038.1 0.40 -1.1 1,955,908 - Xcc-8004.2038.1 0.40 -2.1 1,955,908 - Xcc-8004.2038.1 0.40 -0.3 1,955,908 - Xcc-8004.2038.1 0.40 +0.5 1,955,908 - Xcc-8004.2038.1 0.40 +0.7 1,956,041 + -0.1 1,956,041 + +0.0 1,956,041 + +0.0 1,956,041 + +0.1 1,956,041 + +1.0 1,956,041 + -1.1 1,956,041 + -0.2 1,956,041 + -0.1 1,956,042 - +1.3 1,956,042 - -0.9 1,956,042 - +0.7 1,956,042 - -0.5 1,956,042 - -0.7 1,956,142 - +1.2 1,956,172 + -1.3 1,956,172 + +1.3 1,956,173 - -2.0 1,956,173 - +1.2 1,956,173 - -0.8 1,956,195 + -0.4 1,956,195 + +0.2 1,956,195 + -0.3 1,956,196 - -0.1 1,956,196 - +0.5 1,956,210 + -2.2 1,956,210 + +1.0 1,956,210 + +0.7 1,956,210 + +1.1 1,956,210 + -1.0 1,956,210 + -0.3 1,956,210 + +1.3 1,956,210 + -1.8 1,956,210 + +0.3 1,956,210 + -0.7 1,956,210 + -0.4 1,956,210 + -1.2 1,956,210 + -1.1 1,956,210 + -1.1 1,956,211 - +0.2 1,956,211 - -0.4 1,956,211 - -2.0 1,956,211 - -0.5 1,956,211 - +1.7 1,956,211 - -0.0 1,956,211 - -0.8 1,956,211 - -0.4 1,956,211 - -1.0 1,956,211 - +0.2 1,956,211 - -1.4 1,956,211 - -1.1 1,956,211 - -0.1 1,956,213 + -0.7 1,956,213 + -0.8 1,956,213 + +0.0 1,956,214 - +1.0 1,956,219 + +0.2 1,956,219 + +0.7 1,956,219 + -0.8 1,956,220 - -0.4 1,956,220 - -0.5 1,956,220 - +1.0 1,956,220 - -0.5 1,956,220 - +1.3 1,956,255 + Xcc-8004.2039.1 0.10 -0.5 1,956,255 + Xcc-8004.2039.1 0.10 +1.9 1,956,255 + Xcc-8004.2039.1 0.10 -0.1 1,956,256 - Xcc-8004.2039.1 0.10 -0.5 1,956,256 - Xcc-8004.2039.1 0.10 +0.7 1,956,256 - Xcc-8004.2039.1 0.10 -0.3 1,956,436 + Xcc-8004.2039.1 0.21 +0.5 1,956,436 + Xcc-8004.2039.1 0.21 -0.2 1,956,436 + Xcc-8004.2039.1 0.21 -0.8 1,956,436 + Xcc-8004.2039.1 0.21 -0.8 1,956,436 + Xcc-8004.2039.1 0.21 -0.4 1,956,436 + Xcc-8004.2039.1 0.21 -1.4 1,956,437 - Xcc-8004.2039.1 0.21 -0.8 1,956,437 - Xcc-8004.2039.1 0.21 +0.1 1,956,437 - Xcc-8004.2039.1 0.21 -0.5 1,956,437 - Xcc-8004.2039.1 0.21 +0.1 1,956,437 - Xcc-8004.2039.1 0.21 +0.0 1,956,696 + Xcc-8004.2039.1 0.36 -1.1 1,956,696 + Xcc-8004.2039.1 0.36 +0.2 1,956,696 + Xcc-8004.2039.1 0.36 -1.4 1,956,696 + Xcc-8004.2039.1 0.36 -0.3 1,956,696 + Xcc-8004.2039.1 0.36 -2.1 1,956,696 + Xcc-8004.2039.1 0.36 +0.6 1,956,696 + Xcc-8004.2039.1 0.36 +0.5 1,956,696 + Xcc-8004.2039.1 0.36 +0.5 1,956,696 + Xcc-8004.2039.1 0.36 +2.1 1,956,696 + Xcc-8004.2039.1 0.36 -0.2 1,956,697 - Xcc-8004.2039.1 0.36 -0.4 1,956,697 - Xcc-8004.2039.1 0.36 -0.5 1,956,697 - Xcc-8004.2039.1 0.36 -0.3 1,956,697 - Xcc-8004.2039.1 0.36 -0.4 1,956,697 - Xcc-8004.2039.1 0.36 -0.8 1,956,697 - Xcc-8004.2039.1 0.36 -1.0 1,956,697 - Xcc-8004.2039.1 0.36 +0.4 1,956,756 + Xcc-8004.2039.1 0.40 +0.4 1,956,828 + Xcc-8004.2039.1 0.44 +0.4 1,956,828 + Xcc-8004.2039.1 0.44 -2.5 1,956,828 + Xcc-8004.2039.1 0.44 -0.6 1,956,828 + Xcc-8004.2039.1 0.44 -0.1 1,956,828 + Xcc-8004.2039.1 0.44 -0.0 1,956,829 - Xcc-8004.2039.1 0.44 -0.1 1,956,829 - Xcc-8004.2039.1 0.44 -0.9 1,956,829 - Xcc-8004.2039.1 0.44 +0.1 1,956,829 - Xcc-8004.2039.1 0.44 -0.5 1,956,829 - Xcc-8004.2039.1 0.44 -0.4 1,956,829 - Xcc-8004.2039.1 0.44 -0.5 1,956,890 + Xcc-8004.2039.1 0.48 +1.6 1,956,890 + Xcc-8004.2039.1 0.48 -0.8 1,956,891 - Xcc-8004.2039.1 0.48 -1.1 1,956,891 - Xcc-8004.2039.1 0.48 +2.3 1,956,891 - Xcc-8004.2039.1 0.48 -0.3 1,956,906 + Xcc-8004.2039.1 0.49 +1.1 1,956,907 - Xcc-8004.2039.1 0.49 -0.3 1,956,907 - Xcc-8004.2039.1 0.49 -0.6 1,956,907 - Xcc-8004.2039.1 0.49 -1.4 1,956,946 - Xcc-8004.2039.1 0.51 -1.7 1,956,946 - Xcc-8004.2039.1 0.51 -0.4 1,956,946 - Xcc-8004.2039.1 0.51 -0.9
Or see this region's nucleotide sequence