Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.200.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.199.1 and Xcc-8004.200.1 are separated by 35 nucleotidesXcc-8004.200.1 and Xcc-8004.201.1 are separated by 36 nucleotides Xcc-8004.199.1: Xcc-8004.199.1 - Xylanase, at 191,917 to 192,972 Xcc-8004.199.1 Xcc-8004.200.1: Xcc-8004.200.1 - 2-keto-4-pentenoate hydratase (EC 4.2.1.80), at 193,008 to 193,934 Xcc-8004.200.1 Xcc-8004.201.1: Xcc-8004.201.1 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 193,971 to 194,969 Xcc-8004.201.1 Position (kb) 193 194Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 192.113 kb on - strand, within Xcc-8004.199.1at 192.284 kb on + strand, within Xcc-8004.199.1at 192.284 kb on + strand, within Xcc-8004.199.1at 192.285 kb on - strand, within Xcc-8004.199.1at 192.285 kb on - strand, within Xcc-8004.199.1at 192.344 kb on + strand, within Xcc-8004.199.1at 192.344 kb on + strand, within Xcc-8004.199.1at 192.359 kb on + strand, within Xcc-8004.199.1at 192.359 kb on + strand, within Xcc-8004.199.1at 192.360 kb on - strand, within Xcc-8004.199.1at 192.360 kb on - strand, within Xcc-8004.199.1at 192.438 kb on - strand, within Xcc-8004.199.1at 192.493 kb on + strand, within Xcc-8004.199.1at 192.494 kb on - strand, within Xcc-8004.199.1at 192.494 kb on - strand, within Xcc-8004.199.1at 192.494 kb on - strand, within Xcc-8004.199.1at 192.674 kb on + strand, within Xcc-8004.199.1at 192.674 kb on + strand, within Xcc-8004.199.1at 192.675 kb on - strand, within Xcc-8004.199.1at 192.686 kb on + strand, within Xcc-8004.199.1at 192.686 kb on + strand, within Xcc-8004.199.1at 192.686 kb on + strand, within Xcc-8004.199.1at 192.686 kb on + strand, within Xcc-8004.199.1at 192.686 kb on + strand, within Xcc-8004.199.1at 192.686 kb on + strand, within Xcc-8004.199.1at 192.686 kb on + strand, within Xcc-8004.199.1at 192.686 kb on + strand, within Xcc-8004.199.1at 192.687 kb on - strand, within Xcc-8004.199.1at 192.687 kb on - strand, within Xcc-8004.199.1at 192.687 kb on - strand, within Xcc-8004.199.1at 192.687 kb on - strand, within Xcc-8004.199.1at 192.687 kb on - strand, within Xcc-8004.199.1at 192.687 kb on - strand, within Xcc-8004.199.1at 192.687 kb on - strand, within Xcc-8004.199.1at 192.687 kb on - strand, within Xcc-8004.199.1at 192.687 kb on - strand, within Xcc-8004.199.1at 192.708 kb on + strand, within Xcc-8004.199.1at 192.709 kb on - strand, within Xcc-8004.199.1at 192.709 kb on - strand, within Xcc-8004.199.1at 192.709 kb on - strand, within Xcc-8004.199.1at 192.709 kb on - strand, within Xcc-8004.199.1at 192.710 kb on + strand, within Xcc-8004.199.1at 192.710 kb on + strand, within Xcc-8004.199.1at 192.710 kb on + strand, within Xcc-8004.199.1at 192.711 kb on - strand, within Xcc-8004.199.1at 192.711 kb on - strand, within Xcc-8004.199.1at 192.711 kb on - strand, within Xcc-8004.199.1at 192.711 kb on - strand, within Xcc-8004.199.1at 192.810 kb on + strand, within Xcc-8004.199.1at 192.810 kb on + strand, within Xcc-8004.199.1at 192.811 kb on - strand, within Xcc-8004.199.1at 192.922 kb on + strandat 192.922 kb on + strandat 192.923 kb on - strandat 192.923 kb on - strandat 192.965 kb on + strandat 192.965 kb on + strandat 192.965 kb on + strandat 192.965 kb on + strandat 192.965 kb on + strandat 192.965 kb on + strandat 192.965 kb on + strandat 192.965 kb on + strandat 192.966 kb on - strandat 192.966 kb on - strandat 192.966 kb on - strandat 192.966 kb on - strandat 192.966 kb on - strandat 192.966 kb on - strandat 193.052 kb on + strandat 193.251 kb on + strand, within Xcc-8004.200.1at 193.314 kb on + strand, within Xcc-8004.200.1at 193.314 kb on + strand, within Xcc-8004.200.1at 193.314 kb on + strand, within Xcc-8004.200.1at 193.314 kb on + strand, within Xcc-8004.200.1at 193.314 kb on + strand, within Xcc-8004.200.1at 193.314 kb on + strand, within Xcc-8004.200.1at 193.314 kb on + strand, within Xcc-8004.200.1at 193.315 kb on - strand, within Xcc-8004.200.1at 193.315 kb on - strand, within Xcc-8004.200.1at 193.315 kb on - strand, within Xcc-8004.200.1at 193.315 kb on - strand, within Xcc-8004.200.1at 193.315 kb on - strand, within Xcc-8004.200.1at 193.315 kb on - strand, within Xcc-8004.200.1at 193.315 kb on - strand, within Xcc-8004.200.1at 193.403 kb on + strand, within Xcc-8004.200.1at 193.403 kb on + strand, within Xcc-8004.200.1at 193.422 kb on + strand, within Xcc-8004.200.1at 193.422 kb on + strand, within Xcc-8004.200.1at 193.422 kb on + strand, within Xcc-8004.200.1at 193.422 kb on + strand, within Xcc-8004.200.1at 193.422 kb on + strand, within Xcc-8004.200.1at 193.422 kb on + strand, within Xcc-8004.200.1at 193.422 kb on + strand, within Xcc-8004.200.1at 193.423 kb on - strand, within Xcc-8004.200.1at 193.423 kb on - strand, within Xcc-8004.200.1at 193.423 kb on - strand, within Xcc-8004.200.1at 193.455 kb on + strand, within Xcc-8004.200.1at 193.455 kb on + strand, within Xcc-8004.200.1at 193.455 kb on + strand, within Xcc-8004.200.1at 193.455 kb on + strand, within Xcc-8004.200.1at 193.455 kb on + strand, within Xcc-8004.200.1at 193.456 kb on - strand, within Xcc-8004.200.1at 193.456 kb on - strand, within Xcc-8004.200.1at 193.456 kb on - strand, within Xcc-8004.200.1at 193.456 kb on - strand, within Xcc-8004.200.1at 193.456 kb on - strand, within Xcc-8004.200.1at 193.456 kb on - strand, within Xcc-8004.200.1at 193.623 kb on - strand, within Xcc-8004.200.1at 193.623 kb on - strand, within Xcc-8004.200.1at 193.717 kb on + strand, within Xcc-8004.200.1at 193.717 kb on + strand, within Xcc-8004.200.1at 193.717 kb on + strand, within Xcc-8004.200.1at 193.718 kb on - strand, within Xcc-8004.200.1at 193.718 kb on - strand, within Xcc-8004.200.1at 193.718 kb on - strand, within Xcc-8004.200.1at 193.718 kb on - strand, within Xcc-8004.200.1at 193.718 kb on - strand, within Xcc-8004.200.1at 193.764 kb on + strand, within Xcc-8004.200.1at 193.764 kb on + strand, within Xcc-8004.200.1at 193.765 kb on - strand, within Xcc-8004.200.1at 193.856 kb on + strandat 194.103 kb on + strand, within Xcc-8004.201.1at 194.104 kb on - strand, within Xcc-8004.201.1at 194.181 kb on + strand, within Xcc-8004.201.1at 194.181 kb on + strand, within Xcc-8004.201.1at 194.182 kb on - strand, within Xcc-8004.201.1at 194.260 kb on - strand, within Xcc-8004.201.1at 194.260 kb on - strand, within Xcc-8004.201.1at 194.260 kb on - strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.313 kb on + strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.314 kb on - strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.418 kb on + strand, within Xcc-8004.201.1at 194.419 kb on - strand, within Xcc-8004.201.1at 194.419 kb on - strand, within Xcc-8004.201.1at 194.419 kb on - strand, within Xcc-8004.201.1at 194.419 kb on - strand, within Xcc-8004.201.1at 194.419 kb on - strand, within Xcc-8004.201.1at 194.442 kb on + strand, within Xcc-8004.201.1at 194.442 kb on + strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.443 kb on - strand, within Xcc-8004.201.1at 194.689 kb on - strand, within Xcc-8004.201.1at 194.913 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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192,113 - Xcc-8004.199.1 0.19 +0.3
192,284 + Xcc-8004.199.1 0.35 -0.0
192,284 + Xcc-8004.199.1 0.35 -1.6
192,285 - Xcc-8004.199.1 0.35 +0.2
192,285 - Xcc-8004.199.1 0.35 +0.2
192,344 + Xcc-8004.199.1 0.40 -0.2
192,344 + Xcc-8004.199.1 0.40 -1.7
192,359 + Xcc-8004.199.1 0.42 -0.7
192,359 + Xcc-8004.199.1 0.42 -1.5
192,360 - Xcc-8004.199.1 0.42 -3.2
192,360 - Xcc-8004.199.1 0.42 -0.6
192,438 - Xcc-8004.199.1 0.49 +2.1
192,493 + Xcc-8004.199.1 0.55 -0.0
192,494 - Xcc-8004.199.1 0.55 +1.4
192,494 - Xcc-8004.199.1 0.55 +0.6
192,494 - Xcc-8004.199.1 0.55 -0.1
192,674 + Xcc-8004.199.1 0.72 -0.7
192,674 + Xcc-8004.199.1 0.72 +0.0
192,675 - Xcc-8004.199.1 0.72 +0.5
192,686 + Xcc-8004.199.1 0.73 -0.1
192,686 + Xcc-8004.199.1 0.73 +0.4
192,686 + Xcc-8004.199.1 0.73 -1.0
192,686 + Xcc-8004.199.1 0.73 +0.6
192,686 + Xcc-8004.199.1 0.73 -0.2
192,686 + Xcc-8004.199.1 0.73 -0.7
192,686 + Xcc-8004.199.1 0.73 +0.0
192,686 + Xcc-8004.199.1 0.73 +0.0
192,687 - Xcc-8004.199.1 0.73 +0.7
192,687 - Xcc-8004.199.1 0.73 +0.7
192,687 - Xcc-8004.199.1 0.73 -0.3
192,687 - Xcc-8004.199.1 0.73 -0.1
192,687 - Xcc-8004.199.1 0.73 +1.2
192,687 - Xcc-8004.199.1 0.73 +0.3
192,687 - Xcc-8004.199.1 0.73 -0.4
192,687 - Xcc-8004.199.1 0.73 +0.9
192,687 - Xcc-8004.199.1 0.73 -1.5
192,708 + Xcc-8004.199.1 0.75 +0.4
192,709 - Xcc-8004.199.1 0.75 -0.2
192,709 - Xcc-8004.199.1 0.75 -0.6
192,709 - Xcc-8004.199.1 0.75 -0.2
192,709 - Xcc-8004.199.1 0.75 +0.8
192,710 + Xcc-8004.199.1 0.75 +0.7
192,710 + Xcc-8004.199.1 0.75 -1.8
192,710 + Xcc-8004.199.1 0.75 -0.2
192,711 - Xcc-8004.199.1 0.75 +0.2
192,711 - Xcc-8004.199.1 0.75 +1.2
192,711 - Xcc-8004.199.1 0.75 -0.2
192,711 - Xcc-8004.199.1 0.75 +1.0
192,810 + Xcc-8004.199.1 0.85 -1.1
192,810 + Xcc-8004.199.1 0.85 +0.9
192,811 - Xcc-8004.199.1 0.85 +0.6
192,922 + +0.9
192,922 + -0.5
192,923 - -0.9
192,923 - +0.1
192,965 + -0.7
192,965 + -0.4
192,965 + -0.1
192,965 + -0.8
192,965 + +0.2
192,965 + +0.8
192,965 + -2.9
192,965 + -1.9
192,966 - +0.0
192,966 - +0.4
192,966 - -1.5
192,966 - +0.0
192,966 - -0.6
192,966 - -1.3
193,052 + -0.1
193,251 + Xcc-8004.200.1 0.26 -0.7
193,314 + Xcc-8004.200.1 0.33 -0.2
193,314 + Xcc-8004.200.1 0.33 -0.1
193,314 + Xcc-8004.200.1 0.33 +2.1
193,314 + Xcc-8004.200.1 0.33 -0.6
193,314 + Xcc-8004.200.1 0.33 -1.5
193,314 + Xcc-8004.200.1 0.33 -0.5
193,314 + Xcc-8004.200.1 0.33 -0.3
193,315 - Xcc-8004.200.1 0.33 -0.4
193,315 - Xcc-8004.200.1 0.33 +0.9
193,315 - Xcc-8004.200.1 0.33 -0.1
193,315 - Xcc-8004.200.1 0.33 +0.5
193,315 - Xcc-8004.200.1 0.33 +1.2
193,315 - Xcc-8004.200.1 0.33 +0.7
193,315 - Xcc-8004.200.1 0.33 +0.7
193,403 + Xcc-8004.200.1 0.43 -0.3
193,403 + Xcc-8004.200.1 0.43 +0.1
193,422 + Xcc-8004.200.1 0.45 -0.6
193,422 + Xcc-8004.200.1 0.45 -0.3
193,422 + Xcc-8004.200.1 0.45 +0.3
193,422 + Xcc-8004.200.1 0.45 -2.0
193,422 + Xcc-8004.200.1 0.45 -0.5
193,422 + Xcc-8004.200.1 0.45 +0.4
193,422 + Xcc-8004.200.1 0.45 -0.0
193,423 - Xcc-8004.200.1 0.45 -1.1
193,423 - Xcc-8004.200.1 0.45 +0.6
193,423 - Xcc-8004.200.1 0.45 -0.7
193,455 + Xcc-8004.200.1 0.48 -0.4
193,455 + Xcc-8004.200.1 0.48 +0.7
193,455 + Xcc-8004.200.1 0.48 +1.3
193,455 + Xcc-8004.200.1 0.48 +0.2
193,455 + Xcc-8004.200.1 0.48 -0.5
193,456 - Xcc-8004.200.1 0.48 +2.1
193,456 - Xcc-8004.200.1 0.48 +1.0
193,456 - Xcc-8004.200.1 0.48 -1.5
193,456 - Xcc-8004.200.1 0.48 +0.8
193,456 - Xcc-8004.200.1 0.48 +0.4
193,456 - Xcc-8004.200.1 0.48 -0.4
193,623 - Xcc-8004.200.1 0.66 -0.8
193,623 - Xcc-8004.200.1 0.66 -0.5
193,717 + Xcc-8004.200.1 0.76 +1.1
193,717 + Xcc-8004.200.1 0.76 -1.0
193,717 + Xcc-8004.200.1 0.76 +0.6
193,718 - Xcc-8004.200.1 0.77 +0.7
193,718 - Xcc-8004.200.1 0.77 +0.1
193,718 - Xcc-8004.200.1 0.77 -0.6
193,718 - Xcc-8004.200.1 0.77 +1.1
193,718 - Xcc-8004.200.1 0.77 -0.3
193,764 + Xcc-8004.200.1 0.82 -1.7
193,764 + Xcc-8004.200.1 0.82 +1.3
193,765 - Xcc-8004.200.1 0.82 -1.3
193,856 + +0.0
194,103 + Xcc-8004.201.1 0.13 +0.3
194,104 - Xcc-8004.201.1 0.13 -1.0
194,181 + Xcc-8004.201.1 0.21 -1.6
194,181 + Xcc-8004.201.1 0.21 -1.1
194,182 - Xcc-8004.201.1 0.21 -0.7
194,260 - Xcc-8004.201.1 0.29 -1.0
194,260 - Xcc-8004.201.1 0.29 -1.6
194,260 - Xcc-8004.201.1 0.29 -1.3
194,313 + Xcc-8004.201.1 0.34 +0.3
194,313 + Xcc-8004.201.1 0.34 -1.5
194,313 + Xcc-8004.201.1 0.34 -0.4
194,313 + Xcc-8004.201.1 0.34 -1.9
194,313 + Xcc-8004.201.1 0.34 -0.2
194,313 + Xcc-8004.201.1 0.34 +2.6
194,313 + Xcc-8004.201.1 0.34 -1.4
194,314 - Xcc-8004.201.1 0.34 +0.2
194,314 - Xcc-8004.201.1 0.34 -0.3
194,314 - Xcc-8004.201.1 0.34 -1.5
194,314 - Xcc-8004.201.1 0.34 +3.0
194,314 - Xcc-8004.201.1 0.34 +0.1
194,314 - Xcc-8004.201.1 0.34 +0.2
194,418 + Xcc-8004.201.1 0.45 -0.5
194,418 + Xcc-8004.201.1 0.45 +0.4
194,418 + Xcc-8004.201.1 0.45 +0.0
194,418 + Xcc-8004.201.1 0.45 -0.0
194,418 + Xcc-8004.201.1 0.45 -0.8
194,418 + Xcc-8004.201.1 0.45 +0.6
194,418 + Xcc-8004.201.1 0.45 -0.3
194,418 + Xcc-8004.201.1 0.45 +1.6
194,419 - Xcc-8004.201.1 0.45 -0.7
194,419 - Xcc-8004.201.1 0.45 -0.2
194,419 - Xcc-8004.201.1 0.45 -0.1
194,419 - Xcc-8004.201.1 0.45 +0.0
194,419 - Xcc-8004.201.1 0.45 +1.2
194,442 + Xcc-8004.201.1 0.47 +0.4
194,442 + Xcc-8004.201.1 0.47 +0.7
194,443 - Xcc-8004.201.1 0.47 -1.9
194,443 - Xcc-8004.201.1 0.47 +0.3
194,443 - Xcc-8004.201.1 0.47 +0.1
194,443 - Xcc-8004.201.1 0.47 -0.5
194,443 - Xcc-8004.201.1 0.47 -0.6
194,443 - Xcc-8004.201.1 0.47 +1.3
194,443 - Xcc-8004.201.1 0.47 -0.6
194,443 - Xcc-8004.201.1 0.47 -0.5
194,443 - Xcc-8004.201.1 0.47 -1.5
194,689 - Xcc-8004.201.1 0.72 -0.5
194,913 + +0.3

Or see this region's nucleotide sequence