Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.197.1

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.196.1 and Xcc-8004.197.1 are separated by 204 nucleotidesXcc-8004.197.1 and Xcc-8004.198.1 are separated by 139 nucleotides Xcc-8004.196.1: Xcc-8004.196.1 - L-fucose dehydrogenase, at 187,969 to 189,117 Xcc-8004.196.1 Xcc-8004.197.1: Xcc-8004.197.1 - rhamnogalacturonan acetylesterase, at 189,322 to 190,158 Xcc-8004.197.1 Xcc-8004.198.1: Xcc-8004.198.1 - carboxylesterase type B, at 190,298 to 191,920 Xcc-8004.198.1 Position (kb) 189 190 191Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.335 kb on + strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.336 kb on - strand, within Xcc-8004.196.1at 188.435 kb on - strand, within Xcc-8004.196.1at 188.509 kb on + strand, within Xcc-8004.196.1at 188.509 kb on + strand, within Xcc-8004.196.1at 188.509 kb on + strand, within Xcc-8004.196.1at 188.510 kb on - strand, within Xcc-8004.196.1at 188.510 kb on - strand, within Xcc-8004.196.1at 188.510 kb on - strand, within Xcc-8004.196.1at 188.510 kb on - strand, within Xcc-8004.196.1at 188.848 kb on + strand, within Xcc-8004.196.1at 188.849 kb on - strand, within Xcc-8004.196.1at 188.849 kb on - strand, within Xcc-8004.196.1at 188.931 kb on + strand, within Xcc-8004.196.1at 188.932 kb on - strand, within Xcc-8004.196.1at 188.932 kb on - strand, within Xcc-8004.196.1at 189.159 kb on + strandat 189.179 kb on + strandat 189.179 kb on + strandat 189.179 kb on + strandat 189.180 kb on - strandat 189.180 kb on - strandat 189.180 kb on - strandat 189.180 kb on - strandat 189.180 kb on - strandat 189.208 kb on + strandat 189.209 kb on - strandat 189.423 kb on - strand, within Xcc-8004.197.1at 189.423 kb on - strand, within Xcc-8004.197.1at 189.827 kb on + strand, within Xcc-8004.197.1at 189.827 kb on + strand, within Xcc-8004.197.1at 189.827 kb on + strand, within Xcc-8004.197.1at 189.828 kb on - strand, within Xcc-8004.197.1at 189.828 kb on - strand, within Xcc-8004.197.1at 189.828 kb on - strand, within Xcc-8004.197.1at 189.996 kb on + strand, within Xcc-8004.197.1at 189.996 kb on + strand, within Xcc-8004.197.1at 189.997 kb on - strand, within Xcc-8004.197.1at 189.997 kb on - strand, within Xcc-8004.197.1at 190.243 kb on + strandat 190.244 kb on - strandat 190.244 kb on - strandat 190.269 kb on + strandat 190.269 kb on + strandat 190.269 kb on + strandat 190.270 kb on - strandat 190.270 kb on - strandat 190.270 kb on - strandat 190.270 kb on - strandat 190.285 kb on + strandat 190.335 kb on + strandat 190.335 kb on + strandat 190.336 kb on - strandat 190.419 kb on + strandat 190.420 kb on - strandat 190.550 kb on - strand, within Xcc-8004.198.1at 190.550 kb on - strand, within Xcc-8004.198.1at 190.573 kb on + strand, within Xcc-8004.198.1at 190.635 kb on + strand, within Xcc-8004.198.1at 190.636 kb on - strand, within Xcc-8004.198.1at 190.636 kb on - strand, within Xcc-8004.198.1at 190.636 kb on - strand, within Xcc-8004.198.1at 190.743 kb on + strand, within Xcc-8004.198.1at 190.743 kb on + strand, within Xcc-8004.198.1at 190.743 kb on + strand, within Xcc-8004.198.1at 190.744 kb on - strand, within Xcc-8004.198.1at 190.752 kb on + strand, within Xcc-8004.198.1at 190.800 kb on + strand, within Xcc-8004.198.1at 190.800 kb on + strand, within Xcc-8004.198.1at 190.800 kb on + strand, within Xcc-8004.198.1at 190.800 kb on + strand, within Xcc-8004.198.1at 190.800 kb on + strand, within Xcc-8004.198.1at 190.801 kb on - strand, within Xcc-8004.198.1at 190.801 kb on - strand, within Xcc-8004.198.1at 190.801 kb on - strand, within Xcc-8004.198.1at 190.801 kb on - strand, within Xcc-8004.198.1at 190.801 kb on - strand, within Xcc-8004.198.1at 190.894 kb on + strand, within Xcc-8004.198.1at 190.992 kb on + strand, within Xcc-8004.198.1at 190.992 kb on + strand, within Xcc-8004.198.1at 190.993 kb on - strand, within Xcc-8004.198.1at 190.993 kb on - strand, within Xcc-8004.198.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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188,335 + Xcc-8004.196.1 0.32 -1.9
188,335 + Xcc-8004.196.1 0.32 +0.4
188,335 + Xcc-8004.196.1 0.32 -0.4
188,335 + Xcc-8004.196.1 0.32 +2.0
188,335 + Xcc-8004.196.1 0.32 -2.2
188,335 + Xcc-8004.196.1 0.32 -0.9
188,335 + Xcc-8004.196.1 0.32 +0.4
188,335 + Xcc-8004.196.1 0.32 +1.8
188,336 - Xcc-8004.196.1 0.32 +1.4
188,336 - Xcc-8004.196.1 0.32 +0.4
188,336 - Xcc-8004.196.1 0.32 +0.5
188,336 - Xcc-8004.196.1 0.32 -3.0
188,336 - Xcc-8004.196.1 0.32 +1.4
188,336 - Xcc-8004.196.1 0.32 +0.7
188,336 - Xcc-8004.196.1 0.32 +3.0
188,435 - Xcc-8004.196.1 0.41 -1.7
188,509 + Xcc-8004.196.1 0.47 -0.3
188,509 + Xcc-8004.196.1 0.47 -0.0
188,509 + Xcc-8004.196.1 0.47 +0.6
188,510 - Xcc-8004.196.1 0.47 -1.0
188,510 - Xcc-8004.196.1 0.47 -1.0
188,510 - Xcc-8004.196.1 0.47 -0.5
188,510 - Xcc-8004.196.1 0.47 -0.8
188,848 + Xcc-8004.196.1 0.77 +0.8
188,849 - Xcc-8004.196.1 0.77 -0.4
188,849 - Xcc-8004.196.1 0.77 -0.3
188,931 + Xcc-8004.196.1 0.84 +1.1
188,932 - Xcc-8004.196.1 0.84 -0.3
188,932 - Xcc-8004.196.1 0.84 +0.3
189,159 + +1.0
189,179 + -0.6
189,179 + -0.3
189,179 + -0.2
189,180 - -2.0
189,180 - +0.7
189,180 - +0.0
189,180 - +0.4
189,180 - +0.6
189,208 + -0.2
189,209 - -2.5
189,423 - Xcc-8004.197.1 0.12 -0.6
189,423 - Xcc-8004.197.1 0.12 +0.4
189,827 + Xcc-8004.197.1 0.60 -0.8
189,827 + Xcc-8004.197.1 0.60 -1.3
189,827 + Xcc-8004.197.1 0.60 +0.5
189,828 - Xcc-8004.197.1 0.60 -0.1
189,828 - Xcc-8004.197.1 0.60 -1.1
189,828 - Xcc-8004.197.1 0.60 -1.6
189,996 + Xcc-8004.197.1 0.81 -0.8
189,996 + Xcc-8004.197.1 0.81 -1.3
189,997 - Xcc-8004.197.1 0.81 -0.4
189,997 - Xcc-8004.197.1 0.81 -1.3
190,243 + +0.9
190,244 - +0.5
190,244 - -1.5
190,269 + +0.9
190,269 + +0.9
190,269 + -0.2
190,270 - +0.2
190,270 - -0.4
190,270 - -0.0
190,270 - -1.0
190,285 + -0.0
190,335 + -1.8
190,335 + +0.4
190,336 - -0.8
190,419 + +0.4
190,420 - +1.4
190,550 - Xcc-8004.198.1 0.16 +1.2
190,550 - Xcc-8004.198.1 0.16 +0.2
190,573 + Xcc-8004.198.1 0.17 -0.2
190,635 + Xcc-8004.198.1 0.21 +0.9
190,636 - Xcc-8004.198.1 0.21 +0.0
190,636 - Xcc-8004.198.1 0.21 -0.2
190,636 - Xcc-8004.198.1 0.21 -0.5
190,743 + Xcc-8004.198.1 0.27 +1.7
190,743 + Xcc-8004.198.1 0.27 -0.1
190,743 + Xcc-8004.198.1 0.27 +1.1
190,744 - Xcc-8004.198.1 0.27 +0.5
190,752 + Xcc-8004.198.1 0.28 +0.1
190,800 + Xcc-8004.198.1 0.31 -0.1
190,800 + Xcc-8004.198.1 0.31 -1.2
190,800 + Xcc-8004.198.1 0.31 -0.9
190,800 + Xcc-8004.198.1 0.31 -2.6
190,800 + Xcc-8004.198.1 0.31 -1.3
190,801 - Xcc-8004.198.1 0.31 -0.5
190,801 - Xcc-8004.198.1 0.31 -0.4
190,801 - Xcc-8004.198.1 0.31 +1.2
190,801 - Xcc-8004.198.1 0.31 +0.1
190,801 - Xcc-8004.198.1 0.31 -0.3
190,894 + Xcc-8004.198.1 0.37 +1.7
190,992 + Xcc-8004.198.1 0.43 +0.6
190,992 + Xcc-8004.198.1 0.43 +0.4
190,993 - Xcc-8004.198.1 0.43 -0.1
190,993 - Xcc-8004.198.1 0.43 +0.0

Or see this region's nucleotide sequence